mRNA_H-akashiwo_Contig861.17.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig861.17.1
Unique NamemRNA_H-akashiwo_Contig861.17.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig861.17.1 vs. uniprot
Match: D7FWI4_ECTSI (Histone H2A n=3 Tax=Ochrophyta TaxID=2696291 RepID=D7FWI4_ECTSI)

HSP 1 Score: 218 bits (556), Expect = 1.740e-69
Identity = 119/131 (90.84%), Postives = 128/131 (97.71%), Query Frame = 1 
Query:    1 SGKGGXXXXXXXXXXXPTSKRAPQSRSSRAGLQFPVGRIHRFLKQRVHAHQRVGATAAVYSAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKSSKQ 393
            SGKGG XXXXXXXXX PTSK+APQSRSS+AGLQFPVGRIHRFLK RVH+HQRVGAT+AVY+AAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSL+NK++K+
Sbjct:    2 SGKGGKXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKTTKK 132
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BLAST of mRNA_H-akashiwo_Contig861.17.1 vs. uniprot
Match: A0A7S2LGK2_9STRA (Histone H2A n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LGK2_9STRA)

HSP 1 Score: 216 bits (549), Expect = 2.800e-68
Identity = 123/142 (86.62%), Postives = 130/142 (91.55%), Query Frame = 1 
Query:    1 SGKGGXXXXXXXXXXXPTSKRAPQSRSSRAGLQFPVGRIHRFLKQRVHAHQRVGATAAVYSAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKSSKQ---PKAPGGGK 417
            SGKGG XXXXXXXXX PTSK+APQSRSS+AGLQFPVGR+HRFLK  V + QRVGATAAVY++AILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKS+K    PK  GGGK
Sbjct:    2 SGKGGKXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRVHRFLKTSVMSSQRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKSNKGGVLPKKAGGGK 143
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BLAST of mRNA_H-akashiwo_Contig861.17.1 vs. uniprot
Match: F0XY44_AURAN (Histone H2A n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0XY44_AURAN)

HSP 1 Score: 210 bits (535), Expect = 2.870e-66
Identity = 118/133 (88.72%), Postives = 126/133 (94.74%), Query Frame = 1 
Query:    1 SGKGGXXXXXXXXXXXPTSKRAPQSRSSRAGLQFPVGRIHRFLKQRVHAHQRVGATAAVYSAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKSSKQPK 399
            SGKGG XXXXXXXXX PTSK+APQ++S +AGLQFPVGR+HRFLK RV A QRVGATAAVY+AAILEYLTAEVLELAGNACKDLK+KRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKSSK+ K
Sbjct:    2 SGKGGKXXXXXXXXXAPTSKKAPQTKSLKAGLQFPVGRLHRFLKLRVTASQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKMKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKSSKKKK 134
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BLAST of mRNA_H-akashiwo_Contig861.17.1 vs. uniprot
Match: A0A7S2GSD6_9STRA (Histone H2A n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GSD6_9STRA)

HSP 1 Score: 210 bits (535), Expect = 4.860e-66
Identity = 119/134 (88.81%), Postives = 125/134 (93.28%), Query Frame = 1 
Query:    1 SGKGGXXXXXXXXXXXPTSKRAPQSRSSRAGLQFPVGRIHRFLKQRVHAHQRVGATAAVYSAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKSSKQPKA 402
            SGKGGXXXXXXXXXX PTSK+APQSRSS+AGLQFPVGR+HRFLK  V   QRVGATAAVY++AILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINK SK  K+
Sbjct:   17 SGKGGXXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRVHRFLKHSVQQSQRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKQSKGKKS 150
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BLAST of mRNA_H-akashiwo_Contig861.17.1 vs. uniprot
Match: B7G2A5_PHATC (Histone H2A n=4 Tax=Bacillariophyta TaxID=2836 RepID=B7G2A5_PHATC)

HSP 1 Score: 207 bits (526), Expect = 7.120e-65
Identity = 116/133 (87.22%), Postives = 122/133 (91.73%), Query Frame = 1 
Query:    1 SGKGGXXXXXXXXXXXPTSKRAPQSRSSRAGLQFPVGRIHRFLKQRVHAHQRVGATAAVYSAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKSSKQPK 399
            SGKGG XXXXXXXXX PTSK+APQSRSS+AGLQFPVGR+HRFLK  VH   RVGATAAVY++AILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELD LIKATIAGGGVIPHIHKSLINKS  + K
Sbjct:    2 SGKGGKXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRVHRFLKNSVHQGHRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLINKSQGKGK 134
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BLAST of mRNA_H-akashiwo_Contig861.17.1 vs. uniprot
Match: A0A482SNT5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SNT5_9ARCH)

HSP 1 Score: 205 bits (521), Expect = 6.670e-64
Identity = 103/113 (91.15%), Postives = 109/113 (96.46%), Query Frame = 1 
Query:   49 PTSKRAPQSRSSRAGLQFPVGRIHRFLKQRVHAHQRVGATAAVYSAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKSS 387
            P SKRAPQSRSSRAGLQFPVGRIHRFLK RVH+ QRVGATAAVY++AI+EYLTAEVLELAGNACKDLKVKRITPRHL LAIRGDEELDTLIKATIAGGGVIPHIHKSLINK++
Sbjct:   25 PASKRAPQSRSSRAGLQFPVGRIHRFLKARVHSQQRVGATAAVYTSAIMEYLTAEVLELAGNACKDLKVKRITPRHLLLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKTN 137
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BLAST of mRNA_H-akashiwo_Contig861.17.1 vs. uniprot
Match: A0A2R5GAR4_9STRA (Histone H2A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GAR4_9STRA)

HSP 1 Score: 204 bits (519), Expect = 8.220e-64
Identity = 118/127 (92.91%), Postives = 121/127 (95.28%), Query Frame = 1 
Query:    1 SGKGGXXXXXXXXXXXPTSKRAPQSRSSRAGLQFPVGRIHRFLKQRVHAHQRVGATAAVYSAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINK 381
            SGKGGXXXXXXXXXXXP SK+ PQSRSSRAGLQFPVGR+HRFLKQRV   QRVGATAAVY+AAILEYLTAEVLELAGNA KDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINK
Sbjct:    2 SGKGGXXXXXXXXXXXPASKKTPQSRSSRAGLQFPVGRVHRFLKQRVALKQRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINK 128
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BLAST of mRNA_H-akashiwo_Contig861.17.1 vs. uniprot
Match: K0TER1_THAOC (Histone H2A n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TER1_THAOC)

HSP 1 Score: 203 bits (517), Expect = 7.160e-63
Identity = 116/133 (87.22%), Postives = 122/133 (91.73%), Query Frame = 1 
Query:    1 SGKGGXXXXXXXXXXXPTSKRAPQSRSSRAGLQFPVGRIHRFLKQRVHAHQRVGATAAVYSAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKSSKQPK 399
            SGKG XXXXXXXXXX PT K+APQSRSS+AGLQFPVGR+HRFLK  V   QRVGATAAVY++AILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKS  + K
Sbjct:   47 SGKGXXXXXXXXXXXAPTIKKAPQSRSSKAGLQFPVGRVHRFLKNSVQQSQRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKSQGKTK 179
[Close]
BLAST of mRNA_H-akashiwo_Contig861.17.1 vs. uniprot
Match: A0A7S3PQG1_9STRA (Histone H2A n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PQG1_9STRA)

HSP 1 Score: 201 bits (512), Expect = 7.790e-63
Identity = 113/130 (86.92%), Postives = 119/130 (91.54%), Query Frame = 1 
Query:    1 SGKGGXXXXXXXXXXXPTSKRAPQSRSSRAGLQFPVGRIHRFLKQRVHAHQRVGATAAVYSAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKSSK 390
            SGKGG XXXXXXX   PTSK+APQSRSSRAGLQFPVGR+HRFLK R+ +  RVGATAAVY+AAILEYLTAEVLELAGNA KDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSL+NK  K
Sbjct:    2 SGKGGKXXXXXXX---PTSKKAPQSRSSRAGLQFPVGRVHRFLKARISSKNRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKGKK 128
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BLAST of mRNA_H-akashiwo_Contig861.17.1 vs. uniprot
Match: B8BS24_THAPS (Histone H2A (Fragment) n=9 Tax=Bacillariophyta TaxID=2836 RepID=B8BS24_THAPS)

HSP 1 Score: 201 bits (510), Expect = 1.470e-62
Identity = 101/113 (89.38%), Postives = 108/113 (95.58%), Query Frame = 1 
Query:   49 PTSKRAPQSRSSRAGLQFPVGRIHRFLKQRVHAHQRVGATAAVYSAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKSS 387
            PT K+APQSRSS+AGLQFPVGR+HRFLK+ V   QRVGATAAVY++AILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKS+
Sbjct:   11 PTIKKAPQSRSSKAGLQFPVGRVHRFLKKSVQQSQRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKST 123
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig861.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI4_ECTSI1.740e-6990.84Histone H2A n=3 Tax=Ochrophyta TaxID=2696291 RepID... [more]
A0A7S2LGK2_9STRA2.800e-6886.62Histone H2A n=1 Tax=Leptocylindrus danicus TaxID=1... [more]
F0XY44_AURAN2.870e-6688.72Histone H2A n=2 Tax=Pelagomonadales TaxID=54409 Re... [more]
A0A7S2GSD6_9STRA4.860e-6688.81Histone H2A n=1 Tax=Helicotheca tamesis TaxID=3740... [more]
B7G2A5_PHATC7.120e-6587.22Histone H2A n=4 Tax=Bacillariophyta TaxID=2836 Rep... [more]
A0A482SNT5_9ARCH6.670e-6491.15Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A2R5GAR4_9STRA8.220e-6492.91Histone H2A n=1 Tax=Hondaea fermentalgiana TaxID=2... [more]
K0TER1_THAOC7.160e-6387.22Histone H2A n=1 Tax=Thalassiosira oceanica TaxID=1... [more]
A0A7S3PQG1_9STRA7.790e-6386.92Histone H2A n=1 Tax=Aplanochytrium stocchinoi TaxI... [more]
B8BS24_THAPS1.470e-6289.38Histone H2A (Fragment) n=9 Tax=Bacillariophyta Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig861contigH-akashiwo_Contig861:360414..361366 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FWI4
PFAMsHistone,Histone_H2A_C
Model size732
Max annot lvl2759|Eukaryota
KEGG koko:K11251
KEGG Pathwayko04217,ko05034,ko05322,map04217,map05034,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006325,GO:0006342,GO:0006355,GO:0006996,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0040029,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0071840,GO:0080090,GO:0097159,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Exons3
Evalue5.97e-72
EggNOG OGsCOG5262@1|root,KOG1757@2759|Eukaryota
Descriptionchromatin silencing
Cds size423
COG categoryB
BRITEko00000,ko00001,ko03036,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388016.3204772-UTR-H-akashiwo_Contig861:360413..3607211681388016.3204772-UTR-H-akashiwo_Contig861:360413..360721Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig861 360414..360721 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388016.33394-CDS-H-akashiwo_Contig861:360721..3609151681388016.33394-CDS-H-akashiwo_Contig861:360721..360915Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig861 360722..360915 -
1681388016.3447573-CDS-H-akashiwo_Contig861:361032..3611621681388016.3447573-CDS-H-akashiwo_Contig861:361032..361162Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig861 361033..361162 -
1681388016.3627622-CDS-H-akashiwo_Contig861:361267..3613661681388016.3627622-CDS-H-akashiwo_Contig861:361267..361366Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig861 361268..361366 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig861.17.1prot_H-akashiwo_Contig861.17.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig861 360722..361366 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig861.17.1

>prot_H-akashiwo_Contig861.17.1 ID=prot_H-akashiwo_Contig861.17.1|Name=mRNA_H-akashiwo_Contig861.17.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=141bp
SGKGGKGGKGGKGGKAPTSKRAPQSRSSRAGLQFPVGRIHRFLKQRVHAH
QRVGATAAVYSAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGD
EELDTLIKATIAGGGVIPHIHKSLINKSSKQPKAPGGGKH*
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mRNA from alignment at H-akashiwo_Contig861:360414..361366-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig861.17.1 ID=mRNA_H-akashiwo_Contig861.17.1|Name=mRNA_H-akashiwo_Contig861.17.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=953bp|location=Sequence derived from alignment at H-akashiwo_Contig861:360414..361366- (Heterosigma akashiwo CCMP452)
TCTGGAAAAGGTGGCAAGGGTGGCAAGGGTGGCAAGGGTGGCAAGGCCCC
CACTTCCAAGAGAGCGCCGCAATCGCGTTCTTCTAGAGCCGGTCTTCAGG
TAACCCATGCACTTGTTGTGCTACCACAAACATAAACTATTGATGTATTT
TTTTTTAAATGGGAACTGAGATTTACCCTCCCCCCCCCCCGGACAATCAT
TCAGTTCCCTGTGGGTCGTATCCACCGTTTTCTAAAGCAAAGAGTGCACG
CACATCAAAGAGTTGGCGCGACTGCTGCCGTTTACTCCGCTGCCATCCTC
GAGTATCTAACTGCTGAGGTTCTAGAGCTCGCCGGTGAGCTCGCATCCAT
GCTCGCAAAGTGTTGCCCCACCTTTATACAATCAAGTTGTACTATCTTAA
GACAAACAACATTCATCTAAACACGTTTTAATCGTTTGTAATGCTGTCCA
GGCAACGCATGCAAAGATCTGAAGGTGAAGCGTATCACTCCACGGCATTT
ACAGCTCGCCATTCGTGGTGATGAGGAGCTTGATACTTTGATTAAAGCCA
CCATTGCTGGCGGTGGTGTCATCCCTCATATCCACAAGTCTCTTATCAAT
AAATCTTCGAAGCAGCCCAAGGCTCCTGGTGGTGGAAAACACTGATCGTT
CAAAAAATAACTGACAACTTGGCAAACCTTTTTCATTTCAGCTCGAAGTT
CTTACCTCTCAATAACGGGCAATTGAATGATCTTTCAGTTCAATGCCCTC
ACCACTGCCCTTTATCCAAAATAACTGGGCACACATTGCAATCAAATGTG
CAGGCAATCTGCTCTGGGCACCGACAAAGCAGTTTATTGTTGGTAGTCGA
ACAACAAGAAAGAAGTGGTGGGCTGTTATCATCTTTTTCTTCTCACGTGA
CCTTCATTGAAATTTGCAAGCTTCTTATCATGAGCTTGCAATTTAAAAGC
CCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig861:360414..361366-

>mRNA_H-akashiwo_Contig861.17.1 ID=mRNA_H-akashiwo_Contig861.17.1|Name=mRNA_H-akashiwo_Contig861.17.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=423bp|location=Sequence derived from alignment at H-akashiwo_Contig861:360414..361366- (Heterosigma akashiwo CCMP452)
TCTGGAAAAGGTGGCAAGGGTGGCAAGGGTGGCAAGGGTGGCAAGGCCCC
CACTTCCAAGAGAGCGCCGCAATCGCGTTCTTCTAGAGCCGGTCTTCAGT
TCCCTGTGGGTCGTATCCACCGTTTTCTAAAGCAAAGAGTGCACGCACAT
CAAAGAGTTGGCGCGACTGCTGCCGTTTACTCCGCTGCCATCCTCGAGTA
TCTAACTGCTGAGGTTCTAGAGCTCGCCGGCAACGCATGCAAAGATCTGA
AGGTGAAGCGTATCACTCCACGGCATTTACAGCTCGCCATTCGTGGTGAT
GAGGAGCTTGATACTTTGATTAAAGCCACCATTGCTGGCGGTGGTGTCAT
CCCTCATATCCACAAGTCTCTTATCAATAAATCTTCGAAGCAGCCCAAGG
CTCCTGGTGGTGGAAAACACTGA
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