mRNA_H-akashiwo_Contig838.10.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig838.10.1
Unique NamemRNA_H-akashiwo_Contig838.10.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig838.10.1 vs. uniprot
Match: A0A7S3UTF1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTF1_HETAK)

HSP 1 Score: 115 bits (289), Expect = 8.650e-29
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1 
Query:    1 QELQKALEEAQSRPEKRLSFSLGGKKNSFSVQFSDADKVEVHDVFQMRGMEDNPNSGDG 177
            QELQKALEEAQSRPEKRLSFSLGGKKNSFSVQFSDADKVEVHDVFQMRGMEDNPNSGDG
Sbjct:  355 QELQKALEEAQSRPEKRLSFSLGGKKNSFSVQFSDADKVEVHDVFQMRGMEDNPNSGDG 413
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BLAST of mRNA_H-akashiwo_Contig838.10.1 vs. uniprot
Match: A0A7S3UT43_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UT43_HETAK)

HSP 1 Score: 74.3 bits (181), Expect = 4.140e-14
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 QELQKALEEAQSRPEKRLSFSLGGKKNSFSVQFSDADKVE 120
            QELQKALEEAQSRPEKRLSFSLGGKKNSFSVQFSDADK E
Sbjct:  355 QELQKALEEAQSRPEKRLSFSLGGKKNSFSVQFSDADKAE 394
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig838.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3UTF1_HETAK8.650e-29100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3UT43_HETAK4.140e-1497.50Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig838contigH-akashiwo_Contig838:236990..238302 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size177
Hectar predicted targeting categoryother localisation
Exons2
Cds size177
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388005.3800786-CDS-H-akashiwo_Contig838:236989..2370521681388005.3800786-CDS-H-akashiwo_Contig838:236989..237052Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig838 236990..237052 -
1681388005.3907108-CDS-H-akashiwo_Contig838:238188..2383021681388005.3907108-CDS-H-akashiwo_Contig838:238188..238302Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig838 238189..238302 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig838.10.1prot_H-akashiwo_Contig838.10.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig838 236990..238302 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig838.10.1

>prot_H-akashiwo_Contig838.10.1 ID=prot_H-akashiwo_Contig838.10.1|Name=mRNA_H-akashiwo_Contig838.10.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=59bp
QELQKALEEAQSRPEKRLSFSLGGKKNSFSVQFSDADKVEVHDVFQMRGM
EDNPNSGDG
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mRNA from alignment at H-akashiwo_Contig838:236990..238302-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig838.10.1 ID=mRNA_H-akashiwo_Contig838.10.1|Name=mRNA_H-akashiwo_Contig838.10.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1313bp|location=Sequence derived from alignment at H-akashiwo_Contig838:236990..238302- (Heterosigma akashiwo CCMP452)
CAGGAGCTGCAGAAGGCCCTGGAGGAGGCTCAAAGCCGGCCGGAGAAGAG
GCTGAGCTTCAGCCTGGGGGGCAAGAAGAATTCGTTCAGTGTGCAGTTCA
GCGACGCCGACAAGGTGCGCTTTTGTTCAATAATACATATGCTTTGTAGT
ATACCTGATTAATCCATGCTGCTACATATTATAACTGCTCATGATTACCA
TATGTTTCCCCCCCATCACAAGAGTATGTGCCTACAAAATGTACACTGGC
CAAAAATCGTTATGGTGTTTTGTTCATATCAGAGTTCCCGCTTCCTCTCG
TGAATATGCATGGGCATTGGCAAAAAAGTTGTCTAACAATGAATTTGCTG
GTTTATATCTCTTTTGGTTTTGAAACCTTTTTTTTTTATTGTGGCATCAA
AGGAACTGAATCTTGTGGTATGGAACGGGCTGACTTGCAACACAACACAA
AACAAGATTTAATCAACCACTGCCGTCTTTGATCATTTTCAGTTTTGCCC
TTAAAATGTTTATATTTCATTTTTTAGGCAGGGTGCAATTATAACGCAAT
ATTTATAACGCAGTATAGTACCAGGAGACAGGCATATACAACCACACAGC
TGTAACGCAGTATAGTACCAGGTGACAGGCATATGCAACGAAACAACCCA
CCAAAACAAAGTGGTGGTAACAAATTGAGACCAGAAAATCCTTATTTTTG
GCAGCACATGCAATGCATGTTCAAAACAGGACAACCGCCTTCAGCCTCTC
CCACACTGACATTGTGCGAGGAGACCATGCATGATTAGAAGACTATTAAT
TGGTGCTGGAGCTTGAGCATTAACGCCAAAACACGTTGTAATCCCTCTTC
GAACTGCCGCTGGTGACCAACGAAGTTATGCAAGAAAGTTGCATGTGTGC
AGTCATCATTTGAGAGAAGCAAGAATTAAAAATGAAGATCATGACCAAAA
AATGGAAGAAAACAGAAGGCATCGAAGCATTGGTCCCAAAGCAGACAGAT
TGACTTATCAGGCAAGTATAGCTATCTTTTTGTTTACAACAAAAGAAGTA
TAACTACATTTTGTTGTAAGCCAAAATTTAGTTATACTTCTTTAGCCTTT
CCAACCTCTATCTGTTCTGCTTTGTGGTACACACAATGCTTTATATAATG
TCATGTTTTCCGCGTTTTGAAATTTTCATTATGCACCTCCATGTCCTGCT
TCTGGGCATCGCAGAACTAACACAACCCCGTCCTCCCCCCAATGCCGCAG
GTTGAAGTGCACGACGTGTTCCAGATGAGGGGGATGGAGGACAACCCCAA
CAGCGGCGACGGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig838:236990..238302-

>mRNA_H-akashiwo_Contig838.10.1 ID=mRNA_H-akashiwo_Contig838.10.1|Name=mRNA_H-akashiwo_Contig838.10.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=177bp|location=Sequence derived from alignment at H-akashiwo_Contig838:236990..238302- (Heterosigma akashiwo CCMP452)
CAGGAGCTGCAGAAGGCCCTGGAGGAGGCTCAAAGCCGGCCGGAGAAGAG
GCTGAGCTTCAGCCTGGGGGGCAAGAAGAATTCGTTCAGTGTGCAGTTCA
GCGACGCCGACAAGGTTGAAGTGCACGACGTGTTCCAGATGAGGGGGATG
GAGGACAACCCCAACAGCGGCGACGGG
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