mRNA_H-akashiwo_Contig835.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig835.5.1
Unique NamemRNA_H-akashiwo_Contig835.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig835.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig835contigH-akashiwo_Contig835:414391..415138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size457
Hectar predicted targeting categorysignal peptide
Exons2
Cds size339
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388004.508856-UTR-H-akashiwo_Contig835:414390..4144491681388004.508856-UTR-H-akashiwo_Contig835:414390..414449Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig835 414391..414449 +
1681388004.5380783-UTR-H-akashiwo_Contig835:415079..4151381681388004.5380783-UTR-H-akashiwo_Contig835:415079..415138Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig835 415080..415138 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388004.5189779-CDS-H-akashiwo_Contig835:414449..4145501681388004.5189779-CDS-H-akashiwo_Contig835:414449..414550Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig835 414450..414550 +
1681388004.5284753-CDS-H-akashiwo_Contig835:414841..4150791681388004.5284753-CDS-H-akashiwo_Contig835:414841..415079Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig835 414842..415079 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig835.5.1prot_H-akashiwo_Contig835.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig835 414450..415079 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig835.5.1

>prot_H-akashiwo_Contig835.5.1 ID=prot_H-akashiwo_Contig835.5.1|Name=mRNA_H-akashiwo_Contig835.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=113bp
MMNRTGLLIIILSIFLSGVHAYKSNLGSRHSTSLSQDRKFFPFMKETGRS
FDSAQGGTMTASFRMMMASNDDDAEKKEVGKKGQSDQLSYAVLFLLAVSV
GHVIYHRADYGF*
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mRNA from alignment at H-akashiwo_Contig835:414391..415138+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig835.5.1 ID=mRNA_H-akashiwo_Contig835.5.1|Name=mRNA_H-akashiwo_Contig835.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=748bp|location=Sequence derived from alignment at H-akashiwo_Contig835:414391..415138+ (Heterosigma akashiwo CCMP452)
TCCACACCTACATACTATACTGGATATCCGACACTCAAAGCCGTCCGGCC
AACGCAAACATGATGAACCGAACTGGGTTGTTAATTATCATTCTGTCTAT
TTTTCTTTCAGGGGTGCATGCCTACAAATCGAACCTTGGCTCCAGGCACA
GTACGTCTCTGTAAGTTCACAGTTTCTTCATTCATTATTTTTGATAAATC
AAACATGTTTGCATAATGCTTGCTTGATTCGATAGTTGAATGTTTGCTGA
TCTGCCTCCATTTCTGATCCTGGAGTTCTCTTTCCTCATCGGCAACTGGG
ACTTCTTGGGTAGTCGACTAATACTTATTTTAAAATGATGGTTTCTTCTT
CTTAGGACTAAATGCATCATAACCTCGGCGCCTGCCTGAAATTCTTATTG
TAATTACTATTCCCTCTTTACCCTGTCTGCATTTACCATCAAACACAACA
GGTCACAGGATAGAAAGTTTTTCCCATTTATGAAGGAAACAGGCCGTTCA
TTTGATTCGGCACAGGGCGGCACAATGACTGCCAGCTTTAGAATGATGAT
GGCCTCCAATGATGATGATGCAGAAAAGAAAGAAGTAGGGAAAAAGGGGC
AGTCAGATCAGCTGTCGTATGCTGTTCTTTTCCTTCTTGCAGTAAGTGTG
GGGCATGTTATTTATCATAGAGCAGATTATGGCTTTTGAGGAGGAGCTTG
TAGTATATTATAATAATATATATTATTGTTGTAAAAAAAAAAAAAAAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig835:414391..415138+

>mRNA_H-akashiwo_Contig835.5.1 ID=mRNA_H-akashiwo_Contig835.5.1|Name=mRNA_H-akashiwo_Contig835.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=339bp|location=Sequence derived from alignment at H-akashiwo_Contig835:414391..415138+ (Heterosigma akashiwo CCMP452)
ATGATGAACCGAACTGGGTTGTTAATTATCATTCTGTCTATTTTTCTTTC
AGGGGTGCATGCCTACAAATCGAACCTTGGCTCCAGGCACAGTACGTCTC
TGTCACAGGATAGAAAGTTTTTCCCATTTATGAAGGAAACAGGCCGTTCA
TTTGATTCGGCACAGGGCGGCACAATGACTGCCAGCTTTAGAATGATGAT
GGCCTCCAATGATGATGATGCAGAAAAGAAAGAAGTAGGGAAAAAGGGGC
AGTCAGATCAGCTGTCGTATGCTGTTCTTTTCCTTCTTGCAGTAAGTGTG
GGGCATGTTATTTATCATAGAGCAGATTATGGCTTTTGA
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