mRNA_H-akashiwo_Contig835.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig835.4.1
Unique NamemRNA_H-akashiwo_Contig835.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig835.4.1 vs. uniprot
Match: A0A7S3Y8S1_HETAK (Hypothetical protein (Fragment) n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8S1_HETAK)

HSP 1 Score: 274 bits (701), Expect = 5.380e-91
Identity = 135/141 (95.74%), Postives = 135/141 (95.74%), Query Frame = 1
Query:    1 LRADFLVIGVWERQRVAFFDNRILDADAPSRFDRNTSYVTAMRAAVQEKKTRYLERCEEMAGSFTPLVCTVDGVFHREFVAFMKRVAAVLAGKWGKSYEEVMCWVRIRLQFALIRAVDLRLRGSRMRFHGAGFSDGAGLCR 423
            LRADFL IGVWERQRVAFFDNRILDADAPSRFDRNTSYVTAMRAAVQEKKTRYLERCEEMAGSFTPLVCTVDGVFHREFVAFMKRVAA LAGKWGKSYEEVMCWVRIRLQFALIRAVDLRLRGSRMRF  AGFSD AG CR
Sbjct:  104 LRADFLAIGVWERQRVAFFDNRILDADAPSRFDRNTSYVTAMRAAVQEKKTRYLERCEEMAGSFTPLVCTVDGVFHREFVAFMKRVAAALAGKWGKSYEEVMCWVRIRLQFALIRAVDLRLRGSRMRFQKAGFSDKAGPCR 244          
BLAST of mRNA_H-akashiwo_Contig835.4.1 vs. uniprot
Match: A0A6V1VIF5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VIF5_HETAK)

HSP 1 Score: 176 bits (446), Expect = 1.020e-54
Identity = 85/107 (79.44%), Postives = 91/107 (85.05%), Query Frame = 1
Query:  109 SYVTAMRAAVQEKKTRYLERCEEMAGSFTPLVCTVDGVFHREFVAFMKRVAAVLAGKWGKSYEEVMCWVRIRLQFALIRAVDLRLRGSRMRFHGAGFSDGAGLCRVF 429
            SYVTAMR AVQEKK +Y ERCE++AGSFTPLVCTVDGVFHREFVAFMKRVAA LA KW K Y  VMCWVR+RLQFALIRAVDLRLRGSR  FHG G  DGAG+  V+
Sbjct:    2 SYVTAMRTAVQEKKKKYQERCEDLAGSFTPLVCTVDGVFHREFVAFMKRVAAALAEKWHKPYGVVMCWVRVRLQFALIRAVDLRLRGSRKAFHGFGLMDGAGMGLVY 108          
BLAST of mRNA_H-akashiwo_Contig835.4.1 vs. uniprot
Match: A0A7S3XPJ1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPJ1_HETAK)

HSP 1 Score: 168 bits (425), Expect = 4.010e-51
Identity = 81/93 (87.10%), Postives = 87/93 (93.55%), Query Frame = 1
Query:    1 LRADFLVIGVWERQRVAFFDNRILDADAPSRFDRNTSYVTAMRAAVQEKKTRYLERCEEMAGSFTPLVCTVDGVFHREFVAFMKRVAAVLAGK 279
            LRADF+ IGVWERQRVAFFDNRILDADAPSRF+RN SYVTAMR AVQEKK +YLERCEEMAGSFTPLVCT+D VFH+EFVAFMKR+AA LAGK
Sbjct:   45 LRADFMAIGVWERQRVAFFDNRILDADAPSRFNRNMSYVTAMRTAVQEKKKKYLERCEEMAGSFTPLVCTLDRVFHQEFVAFMKRMAAALAGK 137          
BLAST of mRNA_H-akashiwo_Contig835.4.1 vs. uniprot
Match: A0A0K8SF40_LYGHE (Uncharacterized protein n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0K8SF40_LYGHE)

HSP 1 Score: 139 bits (349), Expect = 2.310e-39
Identity = 71/142 (50.00%), Postives = 93/142 (65.49%), Query Frame = 1
Query:    1 LRADFLVIGVWERQRVAFFDNRILDADAPSRFDRNTSYVTAMRAAVQEKKTRYLERCEEMAGSFTPLVCTVDGVFHREFVAFMKRVAAVLAGKWGKSYEEVMCWVRIRLQFALIRAVDLRLRGSRMRFHGAGFSDGAGLCRV 426
            L AD  V GV E  R AF DNRI++ADA S   +  S +   + A  EK ++Y    E++ GSFTPLVC+ DG   +EF +F+KR A  LA KW KSY +VM WVR+++QFA+IRAV LRLRG+R +    G  DGAGL ++
Sbjct:   11 LVADIKVNGVGESGRPAFLDNRIVNADATSYLSQTWSQIA--KTAAHEKHSKYDRAAEDLRGSFTPLVCSCDGALGQEFHSFLKRAAHTLADKWNKSYSQVMGWVRVKVQFAVIRAVSLRLRGARRKIWSIGLEDGAGLPQI 150          
BLAST of mRNA_H-akashiwo_Contig835.4.1 vs. uniprot
Match: A0A0K8TIN7_LYGHE (Uncharacterized protein n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0K8TIN7_LYGHE)

HSP 1 Score: 138 bits (348), Expect = 1.000e-38
Identity = 67/139 (48.20%), Postives = 90/139 (64.75%), Query Frame = 1
Query:    1 LRADFLVIGVWERQRVAFFDNRILDADAPSRFDRNTSYVTAMRAAVQEKKTRYLERCEEMAGSFTPLVCTVDGVFHREFVAFMKRVAAVLAGKWGKSYEEVMCWVRIRLQFALIRAVDLRLRGSRMRFHGAGFSDGAGL 417
            L AD  V GVW+ +R AFFDNR+++ADA S   R+  + T  + A   K  +Y   CE++ GSFTPLV + DG  HRE+  F+KR+A  L+ KW K Y +V  WVR++ QF++IRAV LRLRG R +  G G  DGA +
Sbjct:   49 LVADLKVQGVWDGERPAFFDNRVVNADAASYVSRD--WPTISQQAANTKHAKYDRACEDLRGSFTPLVVSCDGALHREYETFLKRLANTLSEKWSKPYSQVALWVRVKTQFSVIRAVSLRLRGPRRQVRGLGLEDGAAI 185          
BLAST of mRNA_H-akashiwo_Contig835.4.1 vs. uniprot
Match: A0A7S3Y8Q7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8Q7_HETAK)

HSP 1 Score: 144 bits (362), Expect = 4.470e-38
Identity = 68/143 (47.55%), Postives = 93/143 (65.03%), Query Frame = 1
Query:    1 LRADFLVIGVWERQRVAFFDNRILDADAPSRFDRNTSYVTAMRAAVQEKKTRYLERCEEMAGSFTPLVCTVDGVFHREFVAFMKRVAAVLAGKWGKSYEEVMCWVRIRLQFALIRAVDLRLRGSRMRFHGAGFSDGAGLCRVF 429
            LRADF+V GVWE  R   FD RI+ A +P R  ++ SY  A+  + +EK  RY    EE   +F PL+ TV+G+ H+   AF++R+AA L+ KW K    V  WVR+R+QFALI+AVDLR RGSR ++  +GF DG G+  +F
Sbjct:  337 LRADFVVRGVWEPDRDCLFDTRIIHAGSPGRASQHISYQNALNTSAREKVRRYKAAAEERRATFCPLIVTVEGIAHQSMQAFLRRIAARLSAKWQKPLSTVTNWVRVRVQFALIKAVDLRTRGSRKKWRSSGFEDGEGIAVLF 479          
BLAST of mRNA_H-akashiwo_Contig835.4.1 vs. uniprot
Match: A0A0K8SWD2_LYGHE (Uncharacterized protein (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0K8SWD2_LYGHE)

HSP 1 Score: 137 bits (345), Expect = 3.490e-37
Identity = 69/137 (50.36%), Postives = 88/137 (64.23%), Query Frame = 1
Query:    1 LRADFLVIGVWERQRVAFFDNRILDADAPSRFDRNTSYVTAMRAAVQEKKTRYLERCEEMAGSFTPLVCTVDGVFHREFVAFMKRVAAVLAGKWGKSYEEVMCWVRIRLQFALIRAVDLRLRGSRMRFHGAGFSDGA 411
            L AD    GVWE  R A+FD RI++ADAPS   R   + T    A +EK  +Y    E++ GSFTPL+ + DGV HREF  F KR+AAVL  KW K + +V+ WVR++LQ A+IRAV LR+RG+R R    G  DGA
Sbjct:  144 LVADIKAEGVWESGRAAYFDTRIINADAPSY--RGQEWSTISNNAAREKHNKYNRAAEDLRGSFTPLIISCDGVMHREFGVFSKRIAAVLNEKWSKPFSQVVSWVRVKLQMAVIRAVSLRIRGARKRVRCLGAEDGA 278          
BLAST of mRNA_H-akashiwo_Contig835.4.1 vs. uniprot
Match: A0A0K8SU65_LYGHE (Uncharacterized protein n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0K8SU65_LYGHE)

HSP 1 Score: 131 bits (330), Expect = 1.050e-35
Identity = 64/139 (46.04%), Postives = 88/139 (63.31%), Query Frame = 1
Query:    1 LRADFLVIGVWERQRVAFFDNRILDADAPSRFDRNTSYVTAMRAAVQEKKTRYLERCEEMAGSFTPLVCTVDGVFHREFVAFMKRVAAVLAGKWGKSYEEVMCWVRIRLQFALIRAVDLRLRGSRMRFHGAGFSDGAGL 417
            L AD  V GVWE  R AFFD RI++ADA S   +  ++ +  ++A + K  +Y    E + GSFTPL+C+ DG  HRE+  F KR+A+ LA KW + Y  V+ WV++R Q ++IRAV LRLRG+R      G  DGAG+
Sbjct:   75 LVADIKVQGVWESARPAFFDTRIVNADAASYLSQ--TWESTAQSAARRKHEKYDRAAEHLRGSFTPLICSCDGALHREYTVFQKRLASTLAEKWSRPYSLVLGWVKVRTQVSIIRAVSLRLRGTRKIIRSLGLEDGAGV 211          
BLAST of mRNA_H-akashiwo_Contig835.4.1 vs. uniprot
Match: A0A6H5HCT1_9HEMI (Uncharacterized protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5HCT1_9HEMI)

HSP 1 Score: 139 bits (351), Expect = 1.410e-35
Identity = 70/139 (50.36%), Postives = 90/139 (64.75%), Query Frame = 1
Query:    1 LRADFLVIGVWERQRVAFFDNRILDADAPSRFDRNTSYVTAMRAAVQEKKTRYLERCEEMAGSFTPLVCTVDGVFHREFVAFMKRVAAVLAGKWGKSYEEVMCWVRIRLQFALIRAVDLRLRGSRMRFHGAGFSDGAGL 417
            L  D  + GVWE  R AFFDNRI++ADA S   R  S +     A QEK  +Y + CE++ GSFTPLVC+ DGV HREF   +KR A  LA KW + Y +V+ WVR+R++ A+I+AV LRLRG+R +    G  DGA L
Sbjct:  899 LVGDIRIEGVWESGRPAFFDNRIVNADAASYTSREWSQIAQQ--AAQEKHHKYDQACEDLRGSFTPLVCSCDGVLHREFHTLLKRTADRLAEKWKRPYTQVLGWVRVRIEIAIIKAVSLRLRGARRKAQYLGMDDGAAL 1035          
BLAST of mRNA_H-akashiwo_Contig835.4.1 vs. uniprot
Match: A0A7S3Y8R9_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8R9_HETAK)

HSP 1 Score: 139 bits (350), Expect = 1.830e-35
Identity = 68/139 (48.92%), Postives = 89/139 (64.03%), Query Frame = 1
Query:    1 LRADFLVIGVWERQRVAFFDNRILDADAPSRFDRNTSYVTAMRAAVQEKKTRYLERCEEMAGSFTPLVCTVDGVFHREFVAFMKRVAAVLAGKWGKSYEEVMCWVRIRLQFALIRAVDLRLRGSRMRFHGAGFSDGAGL 417
            L ADF   GVWER R   FD RI+ A +P R  R  SY + + +  + K  +Y    EE   +F PL+ TVDGV H  F AF++RV+A L+ KW +    V  WVR+R+Q +LIRAVDLRLRGSR+++  +GF DGAGL
Sbjct:  707 LIADFATRGVWERSRDCLFDTRIVHAGSPGRASRGISYSSVLNSQARLKINKYKVAAEERRATFCPLIITVDGVAHASFQAFLRRVSAQLSAKWRRPLSSVTNWVRVRMQISLIRAVDLRLRGSRLKWTSSGFEDGAGL 845          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig835.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y8S1_HETAK5.380e-9195.74Hypothetical protein (Fragment) n=4 Tax=Heterosigm... [more]
A0A6V1VIF5_HETAK1.020e-5479.44Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S3XPJ1_HETAK4.010e-5187.10Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A0K8SF40_LYGHE2.310e-3950.00Uncharacterized protein n=2 Tax=Lygus hesperus Tax... [more]
A0A0K8TIN7_LYGHE1.000e-3848.20Uncharacterized protein n=1 Tax=Lygus hesperus Tax... [more]
A0A7S3Y8Q7_HETAK4.470e-3847.55Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0K8SWD2_LYGHE3.490e-3750.36Uncharacterized protein (Fragment) n=1 Tax=Lygus h... [more]
A0A0K8SU65_LYGHE1.050e-3546.04Uncharacterized protein n=2 Tax=Lygus hesperus Tax... [more]
A0A6H5HCT1_9HEMI1.410e-3550.36Uncharacterized protein n=1 Tax=Nesidiocoris tenui... [more]
A0A7S3Y8R9_HETAK1.830e-3548.92Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig835contigH-akashiwo_Contig835:413771..414202 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog400682.PAC_15715267
PFAMsRVT_1
Model size432
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.09e-34
EggNOG OGs2E24P@1|root,2S9D9@2759|Eukaryota,3A6X8@33154|Opisthokonta,3BYHR@33208|Metazoa
Cds size432
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388004.5673811-CDS-H-akashiwo_Contig835:413770..4142021681388004.5673811-CDS-H-akashiwo_Contig835:413770..414202Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig835 413771..414202 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig835.4.1prot_H-akashiwo_Contig835.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig835 413771..414202 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig835.4.1

>prot_H-akashiwo_Contig835.4.1 ID=prot_H-akashiwo_Contig835.4.1|Name=mRNA_H-akashiwo_Contig835.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=144bp
LRADFLVIGVWERQRVAFFDNRILDADAPSRFDRNTSYVTAMRAAVQEKK
TRYLERCEEMAGSFTPLVCTVDGVFHREFVAFMKRVAAVLAGKWGKSYEE
VMCWVRIRLQFALIRAVDLRLRGSRMRFHGAGFSDGAGLCRVF*
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mRNA from alignment at H-akashiwo_Contig835:413771..414202+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig835.4.1 ID=mRNA_H-akashiwo_Contig835.4.1|Name=mRNA_H-akashiwo_Contig835.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=432bp|location=Sequence derived from alignment at H-akashiwo_Contig835:413771..414202+ (Heterosigma akashiwo CCMP452)
CTCCGTGCAGACTTCTTGGTTATTGGTGTGTGGGAGAGGCAGAGGGTGGC GTTTTTTGATAACCGCATTTTGGATGCTGATGCACCCTCTCGTTTTGACC GCAACACAAGCTATGTCACTGCCATGCGTGCCGCAGTGCAGGAGAAGAAG ACAAGATACCTGGAGCGCTGTGAGGAGATGGCTGGGAGCTTTACACCCTT GGTGTGCACAGTGGACGGGGTTTTCCACCGAGAGTTTGTTGCCTTTATGA AGAGGGTGGCAGCTGTACTGGCTGGTAAATGGGGGAAGTCCTACGAGGAG GTGATGTGTTGGGTGAGAATCAGATTGCAGTTTGCACTGATCCGGGCGGT GGACTTGAGGCTTAGGGGGTCTAGGATGAGGTTTCATGGGGCAGGGTTCA GCGATGGGGCAGGGCTATGCAGGGTGTTTTAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig835:413771..414202+

>mRNA_H-akashiwo_Contig835.4.1 ID=mRNA_H-akashiwo_Contig835.4.1|Name=mRNA_H-akashiwo_Contig835.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=432bp|location=Sequence derived from alignment at H-akashiwo_Contig835:413771..414202+ (Heterosigma akashiwo CCMP452)
CTCCGTGCAGACTTCTTGGTTATTGGTGTGTGGGAGAGGCAGAGGGTGGC
GTTTTTTGATAACCGCATTTTGGATGCTGATGCACCCTCTCGTTTTGACC
GCAACACAAGCTATGTCACTGCCATGCGTGCCGCAGTGCAGGAGAAGAAG
ACAAGATACCTGGAGCGCTGTGAGGAGATGGCTGGGAGCTTTACACCCTT
GGTGTGCACAGTGGACGGGGTTTTCCACCGAGAGTTTGTTGCCTTTATGA
AGAGGGTGGCAGCTGTACTGGCTGGTAAATGGGGGAAGTCCTACGAGGAG
GTGATGTGTTGGGTGAGAATCAGATTGCAGTTTGCACTGATCCGGGCGGT
GGACTTGAGGCTTAGGGGGTCTAGGATGAGGTTTCATGGGGCAGGGTTCA
GCGATGGGGCAGGGCTATGCAGGGTGTTTTAA
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