mRNA_H-akashiwo_Contig835.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-akashiwo_Contig835.3.1
Unique Name	mRNA_H-akashiwo_Contig835.3.1
Type	mRNA
Organism	Heterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_H-akashiwo_Contig835.3.1 vs. uniprot

BLAST of mRNA_H-akashiwo_Contig835.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-akashiwo_Contig835	contig	H-akashiwo_Contig835:244966..252999 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Heterosigma akashiwo CCMP452 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	184
Hectar predicted targeting category	no signal peptide or anchor
Exons	2
Cds size	117

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681388004.4353573-UTR-H-akashiwo_Contig835:244965..244991	1681388004.4353573-UTR-H-akashiwo_Contig835:244965..244991	Heterosigma akashiwo CCMP452	UTR	H-akashiwo_Contig835 244966..244991 +
1681388004.4733682-UTR-H-akashiwo_Contig835:252958..252999	1681388004.4733682-UTR-H-akashiwo_Contig835:252958..252999	Heterosigma akashiwo CCMP452	UTR	H-akashiwo_Contig835 252959..252999 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681388004.4479172-CDS-H-akashiwo_Contig835:244991..245021	1681388004.4479172-CDS-H-akashiwo_Contig835:244991..245021	Heterosigma akashiwo CCMP452	CDS	H-akashiwo_Contig835 244992..245021 +
1681388004.4616897-CDS-H-akashiwo_Contig835:252871..252958	1681388004.4616897-CDS-H-akashiwo_Contig835:252871..252958	Heterosigma akashiwo CCMP452	CDS	H-akashiwo_Contig835 252872..252958 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-akashiwo_Contig835.3.1	prot_H-akashiwo_Contig835.3.1	Heterosigma akashiwo CCMP452	polypeptide	H-akashiwo_Contig835 244992..252958 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-akashiwo_Contig835:244966..252999+
coding sequence from alignment at H-akashiwo_Contig835:244966..252999+

protein sequence of mRNA_H-akashiwo_Contig835.3.1

>prot_H-akashiwo_Contig835.3.1 ID=prot_H-akashiwo_Contig835.3.1|Name=mRNA_H-akashiwo_Contig835.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=39bp
MFDGVMEKIDEIVKDIREKEQELNMLRSERLTLMKGTS*

mRNA from alignment at H-akashiwo_Contig835:244966..252999+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-akashiwo_Contig835.3.1 ID=mRNA_H-akashiwo_Contig835.3.1|Name=mRNA_H-akashiwo_Contig835.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=8034bp|location=Sequence derived from alignment at H-akashiwo_Contig835:244966..252999+ (Heterosigma akashiwo CCMP452)
CAGCGCATGTACAGGAGCAGGAATTCATGTTTGATGGTGTCATGGAAAAA
ATTGATGTAAGTTTTTTTTTAATGGTATCAAGGAATCCAGACATTTTTCT
TTCTTTCTGTTTTCACATAAAGTAAAGTCAAATGACCCAGAACTCGTCTA
TTGCTGCTATTATTTTCTTTGATTTTGAAGCTGCTTCCTAATCAGCATGA
ATCCTTCTGTCTGTGATGATGTTGGAGGATAGTGTAATGAAGACTGTTTC
GTATTCTGGGTGGCCTGGCTCTGTGGGACGTATTGCATTTTGCGAGGGGT
ATGAGAGGACCAGTTGTGTGACCGATTCGAGCATGTGGCAGTTGGTGCGA
GTGCCACGGCGGTGCCCTTGTTCGTGCTGCAATCCGGGCAGAGGCCCTTC
TTATTGGAGGTGGTTGTATGGGGCAGAAGTGGTAGGGCCCGTGTATTGGG
GCCAGGGCTTAGGTCCCTTGAGGTATTCAAAATGCTGGGCCTTAAATTAA
TGAAAACCGTCATCATGAAAACCGTCATCATCGTCATGGGGTCAACAGGG
GGGAGGGGGGTGGTCGGTGCGATGCCTGGACAGGCAAAACGTACTTCAAC
AGGGCGCAGCAACGGATGGGTGCCAGGGGGCCATGGACCTTCACCAACTG
GGATCAGAGGGGAAACATTTTTTATTCCTACATTGTAGCATTTATGTGGC
AAGAAATACTTATTGCAACTGTTCCTACCTTTCCCCATTATCATCCATGT
GTGTGTAGTAGAGAAAATGGTGGGGGGAGGGGGGCACCAAGAGAATGCAT
GCAGGCGAAAGTATATGTAGTGGGTGCTTTTTAAGTTTTGGTGAAAGAGC
GATGCAGTGTAGGACTTCGCGCAGCTGGAGCTTCCGCTGGTCAGTAGCGA
TACGCTGTCCGTCAAACTACTCAGAAGCCATGGCACGTGCAAGAAGACAT
TGGTTGTGGCTCAGGAAGTGAGAGGAGCACATTGCATGGTACAGACGTAG
ACAAAAAAAAAAAGAAAGAAAATTATGGGGCTTATTAGAAGTGGAAAGGT
CCATTTACAGAGGACGGGTTGCTGGTCCTTGTAGTTTTCCAAGTGGCTGG
TCCTTCAATATAAATTGAAACCTCCATCATCACCATGGAGTCAACAAAAC
CGACCTTGAGGTTGTTCAGTGACCCACACCCTTTGCCATCAATCAATTAA
AATGAGGCCTCCTGCAGCAAGCAGCCTGTCTCCTACTTTCAAGAAGCAAG
GGTAGAGGTAGGTTGACTACATAGTTCTGGCTTCTGAAGGAGATGGGAAA
AACACTCTGAAGTCGAATGCTATGTGGTGGCTTTCCGCTGTTTTTGAAGT
TACTTCGGGAATTTTTGATTTTGTAATCAATATCGGTATTGATGCAATCA
TAAAACTTTAACTTTTCTGTGTTCTCTCTCTCTGTGTAGACTCTTTTGCA
AAGCCTGTTAATAGATATACACTATCTATTTCTTTGTGAATAATAATAAG
CGCTGATTAAAAAAAAATCAGAACTACTATATACATATATACATCCATGT
TTTTAACTAGCAGCTTGCAATCGCCTTCAAATGAGGGGGGGGGCTTCAGC
AAAAAAACTGTCACATTTTTGTCATTTTATGTGTGTGTGGTGTGTGTGTA
ATTTAGAAAGGTAAAAGCCGTTGTTGAGCTTGAGAGCACCTTCGTGTATT
TGGGTATGGCCTGCAGCTGAAAGAAAAAGCTGTGGTGTGGTGTTGTTTTG
TCAATATTATCAACTTGCAATCGCCTTCAAAAGAGGGAGCGCTTGGGCAA
AAATTTGTGATTTTTGCCATTGGCTTTTTGTTTTAGTGTGTGTGTAATTT
GGAAAGGTATAATCCATTGTTGCGCTTCAGAGCGCCTTCAAGTATATGGG
TATAATAGACGAGGCACTCTGTAGCTGAAACAAAAAGCTGTATAGTGTTG
TCAATCTTTTGATGTAGTTAGTCATTTGTTATTTGTGTTGTCAAATTATG
TTTGTGTTTGTTTTTTCTTGTTGTCTTAGACTGTGAAAGCAGCTGTATTG
TTTGTGTTATAACATAGATTTTTCTCGGAGACAACCTCAAAATCAAATAG
GTTCTTAAGAGTCTGTGGTCGGCTCAGCGATGGCTGGAGTTTTTCTTTGA
CTTTGTACGCTTTAGGCAAGGACACTTGGTCAACACCCACCAAAGAACTG
ATAATAAAGCGTGGGGGTTGATGTTTCGGCAGGTATAGCTGCAGGCATTG
AAACAGATTCGCAGTGTTGCGGAACATCAGTGGTAGCAGTGACACTAAAA
TCACCTTCCCCTGAACATAATCAGTTGCCTAGTGCGGGCGAGAAGAAAGC
GCATGGAGAAACACGTAAGGTTTGAACTATCATCGTTCCCTTTGTAGTTA
CCCTCCCCCCCCCTTTGAACTATTTTTCCATCATCCGTCAACTGCTGGCT
ATAATCTAGTCTAACTCCAAATGGAATGGTCCTCAAGGTGACGTTGGCAA
AAACAGTAAGCTATACATCGTGAGAAAAAATCCACACCACCTGACCAATA
ACAACTGTTTGTTTTGGCCGCTCAGTGGAAAAACACTTTAGAAGGAGCAC
TCCTTTGGCTGTCAAATAGTGTTGTTGCTGTTCAAAAAGTAAGTTGTTGT
TTTTTAAAACCAACAATGTACAACAACAGCAACATGATGATGATATGTAA
ATGCATATTTTTAAATGCTTACCACCTTACAACGTCACCTCTATCATAAC
ATAATCGCCAGGACAAAAAGTCAGAAGACAACAGTAACCTTGTCATCCAT
AAATAGCTGTCATGAATAAGATAACCAACATTCATACTCAGTACAGCAAT
AGCATGCTAGCTTTGGTTTTAGCAGACAAAAGATAGGGTTTTCAAACTGT
AAGAGGCGGCCTCATGTTTCATGGTGGGGGACGGGCGAGTTGCAAAACCC
CACCAAAAAATCAGACGTATGCTCTGGAGCATCCGCTTTTTTCGGCCTAG
GACCCACCCCTCCCGGTCCCAGGCCGAAAGTGCAGGTGCTCCGGACCACC
CGCTCACTCTCCCTCCACCGCGTGATCTGGAGCACCCGCTCACCCTCTCC
CCACCTCCTGATCCGGAGCACCCACTCACCCTCCCCCCACCTTGTGGTCT
GGAGCATCCGTCCTTCCACCTCTTGATCCGAAGCAGCTGCTCACCCTCCC
CCCACCTCGTGATCCgAAGCACATGATCACCACTACCACCCACACCCCAT
AATACCATCCCTCCTCGCTCCTGACCCCAAGTCGGCCCAAACCCCCACTC
AGCTGCAGTTTGAGGGACCAACCTCCAGTCGTCAACACAACATTCCACGC
CACCCAACGACGCCACCTCCACCACCTCATGCTTCAGATCACCTGGTCAC
CCCACTTCCGCCTCGTGCTCCGGATCATCCGTGCCCCTCCCCCTGCTTCG
TGCTCCGGATCACCCGCTTAGCCCCAACTGCCTTGTGCTCCGGACTGTCC
ACTCACCCCTCAAAAATCGCGTGCTCCGGATCTCCAGATTGCCAACCAAC
CACCACCACCACCACGCCCACCACCACCACCAACCGATCACCACTCACCA
CCACCACCACCACCTACAAAAATTGTAATGAAAAATATAGTATTATGTTC
AAACTTATCATTATACCACAACCCATATCCCCTCTTTTTTTGAGATCTTG
CTGCCGGCTTTACGCTCTCCAAAGGGCTTATTCAGCTCGACACAGTCTGA
CAGGTTCTGTTGCCTTTTTTTCTTGGTTGACCTGGCCTTGGCTTACCATA
TCAGTGTCCAGGTCACTAAAAAGCAACCTCAGCCCCCCCTGACTAAACCT
CACTGTTAAATCTGTGAGGCATCACTCACACAAGGTGACCGAGGTAAAAA
ACTCCTAGCAAAGCTAAAAGAGATTGTGGAGAGCGACCTTGGTGGAGTGG
TGGTGGCCAGTGACACTGACCGCTATCATTTCTATGCCGTGGGTGGTCGG
TATTACCCACGCACCACACCTGTCATAACACTGACGCATGATCACGCTCA
CAGCACCTTCACCAACTGAGACCAGTTCATCTTCCGCCCAACTCCCTGGC
AACTTTCAAAAGATGCTATAGAGCTAGAACTCCGGGCATATGGAACGATC
TAAGACACCCCGCTCTCCAACAGCAGCATGTACAAGAATACCTTCCTCTT
AAAAGACAACTGCACACACATGGACGATAATGGGTAGCGATAGCAACAGT
TACAACAAGCAATTTTTGTCACTTAAATGCTAAAACGTAGAAAAAAAGAA
GAAAAAAATGATACGCTGTTGAAGCAAGGCAAAGGTCGCCAACTTCTTCA
CCCACTGGACACCAACTACAGAACCTGTTTACCAACCACCCTGCCAAGCA
TGTGTTGGACCGAGTCGTGTGTCCGGAGGTGTTCCGCCAGCACCATCGCG
TGGAACACTACGCAGTAGCTAGTGTTGTAGACTTGCTGAACTGCCAAAAC
ATAGATCCTGACTTGTTTGACCCAAGCGCCAAGGAAATTTGTAAGACTGC
ACTGTGGTGGACTCGTTGCAACAGGCTCCGAGGAATTAGTCATTGCGAGA
AGGCCAGGGCAAGCAAGGCGCTGCTTGAACAAAACGACATTGAGATGTCA
GTTCGCGCTGTATACCAGCTGCTCCCGCTCCCTCTATGTTAGGATTTTGG
GCTCAATTGTCAAGTCATTCACTCTGGCTCTATCGTCGACAGCATGCGAC
CTCACAGCTTTGGCTCATGATGCTCTGCATGATAGCACACTGGCAGAATC
TATATATCTGTGACCCCCTACCCCCCTGTTCATTCTTGGAGGACTGGTGG
TTCTTCTCTCATACGATAGTTTGGTTGCTTGCCAACAACTCCTAGCTATG
TCTCATGGCGATGACAGTATTCTGTTTTCAATTCTTTTATTCAGTTATAG
TTGCATAAAAGGTGTCCTCAGGTGACGATCTCAGTCAAGCTTAATTTATT
GGTTTTCTTCTCTTCTACTGGAGAAGAAGAAGAATTGGCCTTCCCCCTGG
CATTGGGAACATCACTCTCCTGGCAATGGAGGAGACATCATATTTTCATA
TTTGTTTCTTCTTTGTTATTGTGCTTCTGATTTGTTTTTGTGCATTAGAC
AACCAACAACCACTTCTCCCACATAATAAGACACTTTTGCTGCCTGCCTC
ATTTGAGTTTTCACCTTGCCCTAGTGCCTTGCACTTTGGCTGATCAGTAT
GACACTGATGGTTTTGAGGCTTAACTTTGAAGCCAGCTTTGGCTGACGCT
TACACTCTACATCAATAATGTGTCGATGTGGAGATGCCTCCACCAGCTAC
TGTCCAGGAATGGATGGGACAAGTACTGCAGCAATTAGGAGAGGTAACGC
CGCGTGGTGCTGCCGCCTCTTCTGTGTCACCACAGCCCAGACGTTCAGCC
AGAAAAGGAATCAGAACCCTGTCTGATACAATTGACAGTGTTTCAGACTT
TGGTGAGGAGGGACCACCTACCAGAAGAAGTGCGAGGAAAACAAGTGCTG
GTGCCAACAAACAATACTGTTGATCAGGAAGCCACCTTGGTCGGCGACCT
GCCCCCCAGCAGGCTGGCTGCGCGCAAAAGCCAGGGGTAGGGGACAGTAG
AAACGTTGGTACAGCTTGACTGCCCTTTTGCTTGTTGGTAGTGCATACAT
CCTTGTGTGGTTCTGAACTATTTTTGGTTTGTAATATTATTGTTACATAA
TATCATTTTTTATAAGGTAATTTGGGTTGTTGTTGGCACTGTTGCTCAAA
TTTGGTCCATCATCATGGTCATCTGTATTTTATGAAGTGGTGGTGGTGGT
GGTGCTCAGTGATAATGGAGTGGTTGTGGTGGGTGGTTGGTAATTTGGTG
ATCTTCAACACAAGATTGTTGAGGGGTGAGCGGACAATCCGGAGCACGAG
GCAGTTGGCGCTAAGTGGGTGATCCGGAGCCCGAAGCAGGGGGAGGGGCA
CGGATGATCCGGAGCACGAGGTGGAAGTGGGGTGACCGAATGATCTGAAG
CACGAGGTGGTGGAGGTGGCGTTGGGTGGCGTGGAATGTTGTGTTGACGA
CTGGGGGTTGGTCCCTGAAACTGCAGCAGAGTGGGGGTTTGGGCTGACTT
GGAGTCAGGAGCGAGGAGAGCTGGTATGGCGGGGTGTGGGTGGTGGTGGT
GATCAGGTGCTCTGGATCACGAGGTGGGGGGAGGGTGAGCTGGTGCTCTG
GATCAAGAGGTGGAGGGGCGGGTGCTCCAGATCACGAGGTGGGGGAGGGT
GAGTGGGTGCTCCAGAGCACCTGTACTTTTGGCCTGGGACCAGGAGGGTG
GATCCTAGGCAAAAAGCGGATGCTCTAGAGCATACGCCTGATTTTTGTTG
GGGTTTTGCAACTTCCGGGGATCCCTTGGCATCTTCTGGTATAGTAACAA
TCTTTGTGTGTCAGAGGTCAAAGCCATCCACTTGATAACATTCAGGGACG
TTTCATAGAATTGTCCTCGTGGAACGTGTAGACGTTGGCAGTAACTTCTG
TAACTGTCAGCGTTCAAAAACGAGCAGGCGGCTAGTGTTGGTAGGCTGGT
TGAAGAGATTCGTCGAGTCTCAAGGATGATAAAATGGCATTGCGAGGAGC
ACCTGGTGCTTCGCAACCAGAGGTGGATTGTCGGTTTCTATCGGAACCAT
CTCGAATCGCAGGGGGAGACAGGTGCACCAGTCACAGATGTGAATTGTCG
GAGGAAGCGCCACTTGGAGAGACAAATGAAGACTGGATCTGGGCCAAAGG
GCAACAGAGCATGTAGGGCTTTGCGCAGCTGGAACTTCGGTTGATCAGTA
TAGTAAGAAATTGTCCGTCAAAGTGCTCAGATGCCATGGCGCATGTAAGA
AGACAGTGATTTTAGCTCTGGATGTGAGAGGAGCACATTGCATGTGAAAC
AAACAAGAGGGGGGGGGGGTATTCTTGAACTAGCCTCTGCATGTTTACTA
TAACACAATAGTAGGATATGTATCATATATATATCATATATATATTAGAG
ATGCATGTATATTGCGGATATATCAATGTGCATATAATAATATTATCTCC
ATTTCATTTGTTTGTTTGTTTTCAAATAATCTGGGTTCATTGGAGAGTTG
CAGTTTTTCCCTCAAAACTGTACCCAATGACAGAATGATAGACCCAAAGT
GTTTTCAAGTAACCTGATTTCATTGGGGTTACAGTTTTCCCCTCAAAACT
ACCATATTCTTTTGAGATGAGATTTCTTCTGGGATAGCTTTTTATGATCA
GAAAAATGAAATAAAATAAATCTACCCGATGAAGGGGGAACCCGAAACGT
TGTAACCTTTTAACAGATAATGATAATGCTCCTTTAATTTATTTACTGTG
TTGCCCGCATTATTTCACCATTATTTAAGTTTCCTCCCGTAAGTTTTCAA
AGTCGTCTCTGGTGCCCCAAGCAAGCTTTTTTGGAGCAAGCAATTGCAAA
GCAAAACTGAGTATCCAGAAAAAACTATTAGGTTGAAAAGTTCTGCTGAG
CTGGGTGCTTTTAAGAAATGTCATTCTATCTGCTATCTGATACAAGTCAA
AAAGCTGATAGAAAAGCTGCATATAATAGTTTGTCGCCATTTACCCTGCA
AGTAGGTCAGTGCTTCCAGATAACTCTGCTTCTGTAGGTTGGCAACCTGC
TATGTCCTACGGTGACGTTTCGACTACCCTTGTTCGCGCACCCTGAACCT
GTTGTTTGTATATTTCTCTAACCCTGTGTCTATTTGTACCTTTGGTTTAC
GTCAAAACATACTTGTATCTATCTAAAATTGTCCCAAGTAGAAAACATGG
TTGTATCAAATGTATTTGTATTATTTATTACACATTCTTATTTGCCACCA
TACCAGGAAATAGTCAAAGATATCAGGGAGAAGGAGCAGGAGCTTAATAT
GCTGCGAAGTGAACGTCTAACGTTAATGAAGGGAACTTCATGATGACATG
TATAAGTCTAGTATCACGATCATCATACTATATG

Coding sequence (CDS) from alignment at H-akashiwo_Contig835:244966..252999+

>mRNA_H-akashiwo_Contig835.3.1 ID=mRNA_H-akashiwo_Contig835.3.1|Name=mRNA_H-akashiwo_Contig835.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=117bp|location=Sequence derived from alignment at H-akashiwo_Contig835:244966..252999+ (Heterosigma akashiwo CCMP452)
ATGTTTGATGGTGTCATGGAAAAAATTGATGAAATAGTCAAAGATATCAG
GGAGAAGGAGCAGGAGCTTAATATGCTGCGAAGTGAACGTCTAACGTTAA
TGAAGGGAACTTCATGA