mRNA_H-akashiwo_Contig830.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig830.1.1
Unique NamemRNA_H-akashiwo_Contig830.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig830.1.1 vs. uniprot
Match: A0A7S4DAQ9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAQ9_HETAK)

HSP 1 Score: 163 bits (412), Expect = 8.490e-49
Identity = 76/101 (75.25%), Postives = 89/101 (88.12%), Query Frame = 1 
Query:   40 YYYNEDSLGRDDAQTACEALGGMLASIDSSDVDSEVLDLTGGTTAWIGLNDESTEGTYVWADGTSVGDYTNWNSGEPNDWGDSEDCVEMTSSGGWNDNSCS 342
            + Y   +L RDDA++ACEA GGMLASI S+++D E+++LTGG +AWIGLNDESTEGTYVWADGTS  DYTNWN+GEPNDWGDSEDCVE+TS GGWNDNSCS
Sbjct:   29 FRYYTGALSRDDAESACEAAGGMLASITSAEIDEEIVELTGGDSAWIGLNDESTEGTYVWADGTSSADYTNWNTGEPNDWGDSEDCVEITSGGGWNDNSCS 129
[Close]
BLAST of mRNA_H-akashiwo_Contig830.1.1 vs. uniprot
Match: A0A7S3Y191_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y191_HETAK)

HSP 1 Score: 162 bits (410), Expect = 1.760e-48
Identity = 76/101 (75.25%), Postives = 89/101 (88.12%), Query Frame = 1 
Query:   40 YYYNEDSLGRDDAQTACEALGGMLASIDSSDVDSEVLDLTGGTTAWIGLNDESTEGTYVWADGTSVGDYTNWNSGEPNDWGDSEDCVEMTSSGGWNDNSCS 342
            + Y   +L RDDA++ACEA GGMLASI S+++D E+++LTGG +AWIGLNDESTEGTYVWADGTS  DYTNWN+GEPNDWGDSEDCVE+TSSGGWND SCS
Sbjct:   29 FRYYTGALSRDDAESACEAAGGMLASITSAEIDEEIVELTGGDSAWIGLNDESTEGTYVWADGTSSADYTNWNTGEPNDWGDSEDCVEITSSGGWNDQSCS 129
[Close]
BLAST of mRNA_H-akashiwo_Contig830.1.1 vs. uniprot
Match: A0A7S3Y190_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y190_HETAK)

HSP 1 Score: 162 bits (410), Expect = 1.760e-48
Identity = 82/85 (96.47%), Postives = 82/85 (96.47%), Query Frame = 1 
Query:   97 LGGMLASIDSSDVDSEVLDLTGGTTAWIGLNDESTEGTYVWADGTSVGDYTNWNSGE---PNDWGDSEDCVEMTSSGGWNDNSCS 342
            LGGMLASIDSSDVDSEVLDLTGGTTAWIGLNDESTEGTYVWADGTSVGDYTNWNSGE   PNDWGDSEDCVEMTSSGGWNDNSCS
Sbjct:    1 LGGMLASIDSSDVDSEVLDLTGGTTAWIGLNDESTEGTYVWADGTSVGDYTNWNSGETGEPNDWGDSEDCVEMTSSGGWNDNSCS 85
[Close]
BLAST of mRNA_H-akashiwo_Contig830.1.1 vs. uniprot
Match: A0A7S3Y189_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y189_HETAK)

HSP 1 Score: 163 bits (412), Expect = 4.440e-48
Identity = 76/101 (75.25%), Postives = 89/101 (88.12%), Query Frame = 1 
Query:   40 YYYNEDSLGRDDAQTACEALGGMLASIDSSDVDSEVLDLTGGTTAWIGLNDESTEGTYVWADGTSVGDYTNWNSGEPNDWGDSEDCVEMTSSGGWNDNSCS 342
            + Y   +L RDDA++ACEA GGMLASI S+++D E+++LTGG +AWIGLNDESTEGTYVWADGTS  DYTNWN+GEPNDWGDSEDCVE+TS GGWNDNSCS
Sbjct:   98 FRYYTGALSRDDAESACEAAGGMLASITSAEIDEEIVELTGGDSAWIGLNDESTEGTYVWADGTSSADYTNWNTGEPNDWGDSEDCVEITSGGGWNDNSCS 198
[Close]
BLAST of mRNA_H-akashiwo_Contig830.1.1 vs. uniprot
Match: A0A7S4DAG0_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAG0_HETAK)

HSP 1 Score: 162 bits (410), Expect = 1.140e-47
Identity = 76/101 (75.25%), Postives = 89/101 (88.12%), Query Frame = 1 
Query:   40 YYYNEDSLGRDDAQTACEALGGMLASIDSSDVDSEVLDLTGGTTAWIGLNDESTEGTYVWADGTSVGDYTNWNSGEPNDWGDSEDCVEMTSSGGWNDNSCS 342
            + Y   +L RDDA++ACEA GGMLASI S+++D E+++LTGG +AWIGLNDESTEGTYVWADGTS  DYTNWN+GEPNDWGDSEDCVE+TSSGGWND SCS
Sbjct:   98 FRYYTGALSRDDAESACEAAGGMLASITSAEIDEEIVELTGGDSAWIGLNDESTEGTYVWADGTSSADYTNWNTGEPNDWGDSEDCVEITSSGGWNDQSCS 198
[Close]
BLAST of mRNA_H-akashiwo_Contig830.1.1 vs. uniprot
Match: A0A7S3Y1D3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1D3_HETAK)

HSP 1 Score: 162 bits (410), Expect = 1.540e-47
Identity = 76/101 (75.25%), Postives = 89/101 (88.12%), Query Frame = 1 
Query:   40 YYYNEDSLGRDDAQTACEALGGMLASIDSSDVDSEVLDLTGGTTAWIGLNDESTEGTYVWADGTSVGDYTNWNSGEPNDWGDSEDCVEMTSSGGWNDNSCS 342
            + Y   +L RDDA++ACEA GGMLASI S+++D E+++LTGG +AWIGLNDESTEGTYVWADGTS  DYTNWN+GEPNDWGDSEDCVE+TSSGGWND SCS
Sbjct:   29 FRYYTGALSRDDAESACEAAGGMLASITSAEIDEEIVELTGGDSAWIGLNDESTEGTYVWADGTSSADYTNWNTGEPNDWGDSEDCVEITSSGGWNDQSCS 129
[Close]
BLAST of mRNA_H-akashiwo_Contig830.1.1 vs. uniprot
Match: A0A7S3Y183_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y183_HETAK)

HSP 1 Score: 162 bits (410), Expect = 1.180e-46
Identity = 76/101 (75.25%), Postives = 89/101 (88.12%), Query Frame = 1 
Query:   40 YYYNEDSLGRDDAQTACEALGGMLASIDSSDVDSEVLDLTGGTTAWIGLNDESTEGTYVWADGTSVGDYTNWNSGEPNDWGDSEDCVEMTSSGGWNDNSCS 342
            + Y   +L RDDA++ACEA GGMLASI S+++D E+++LTGG +AWIGLNDESTEGTYVWADGTS  DYTNWN+GEPNDWGDSEDCVE+TSSGGWND SCS
Sbjct:   98 FRYYTGALSRDDAESACEAAGGMLASITSAEIDEEIVELTGGDSAWIGLNDESTEGTYVWADGTSSADYTNWNTGEPNDWGDSEDCVEITSSGGWNDQSCS 198
[Close]
BLAST of mRNA_H-akashiwo_Contig830.1.1 vs. uniprot
Match: A0A7S4D8G1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8G1_HETAK)

HSP 1 Score: 150 bits (380), Expect = 9.410e-42
Identity = 73/114 (64.04%), Postives = 90/114 (78.95%), Query Frame = 1 
Query:    1 EGCATGTEIGGACYYYNEDSLGRDDAQTACEALGGMLASIDSSDVDSEVLDLTGGTTAWIGLNDESTEGTYVWADGTSVGDYTNWNSGEPNDWGDSEDCVEMTSSGGWNDNSCS 342
            EGC+ GTE  G CYY+N DSL R+ A+ ACE LGG LASI S+D++SE++ L GG + WIGL+D+STEGTYVW DG+    YT+W SGEPND+G +EDCVEM SSG WND+SCS
Sbjct:   72 EGCSVGTEYNGKCYYHNSDSLSRNSAEAACETLGGTLASITSADMNSELVSLAGGNSVWIGLSDQSTEGTYVWEDGSEP-TYTSWASGEPNDYGGAEDCVEMWSSGNWNDDSCS 184
[Close]
BLAST of mRNA_H-akashiwo_Contig830.1.1 vs. uniprot
Match: A0A7S3Y187_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y187_HETAK)

HSP 1 Score: 139 bits (350), Expect = 2.020e-40
Identity = 67/88 (76.14%), Postives = 77/88 (87.50%), Query Frame = 1 
Query:   40 YYYNEDSLGRDDAQTACEALGGMLASIDSSDVDSEVLDLTGGTTAWIGLNDESTEGTYVWADGTSVGDYTNWNSGEPNDWGDSEDCVE 303
            Y Y   +L RDDA++ACEA GGMLASI S ++D E+++LTGG +AWIGLNDESTEGTYVWADGTSV DYTNWN+GEPNDWGDSEDCVE
Sbjct:   29 YRYYTGALSRDDAESACEAAGGMLASITSDEIDEEIVELTGGDSAWIGLNDESTEGTYVWADGTSV-DYTNWNTGEPNDWGDSEDCVE 115
[Close]
BLAST of mRNA_H-akashiwo_Contig830.1.1 vs. uniprot
Match: A0A7S3Y3I4_HETAK (Hypothetical protein (Fragment) n=6 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3I4_HETAK)

HSP 1 Score: 129 bits (325), Expect = 2.070e-36
Identity = 65/69 (94.20%), Postives = 65/69 (94.20%), Query Frame = 1 
Query:    1 EGCATGTEIGGACYYYNEDSLGRDDAQTACEALGGMLASIDSSDVDSEVLDLTGGTTAWIGLNDESTEG 207
            EGCATGTEI GACYYYNEDSL R DAQTACEALGGMLASIDSSDVDSEVLDL GGTTAWIGLNDESTEG
Sbjct:   70 EGCATGTEINGACYYYNEDSLSRADAQTACEALGGMLASIDSSDVDSEVLDLAGGTTAWIGLNDESTEG 138
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig830.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DAQ9_HETAK8.490e-4975.25Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3Y191_HETAK1.760e-4875.25Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y190_HETAK1.760e-4896.47Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y189_HETAK4.440e-4875.25Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4DAG0_HETAK1.140e-4775.25Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y1D3_HETAK1.540e-4775.25Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3Y183_HETAK1.180e-4675.25Hypothetical protein (Fragment) n=3 Tax=Heterosigm... [more]
A0A7S4D8G1_HETAK9.410e-4264.04Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3Y187_HETAK2.020e-4076.14Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3Y3I4_HETAK2.070e-3694.20Hypothetical protein (Fragment) n=6 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig830contigH-akashiwo_Contig830:119146..119487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog8479.XP_005312645.1
Preferred nameCLEC4G
PFAMsLectin_C
Model size342
Max annot lvl33208|Metazoa
KEGG koko:K10061
Hectar predicted targeting categoryother localisation
GOsGO:0001871,GO:0002682,GO:0002683,GO:0002694,GO:0002695,GO:0002697,GO:0002698,GO:0002703,GO:0002704,GO:0002706,GO:0002707,GO:0002709,GO:0002710,GO:0002819,GO:0002820,GO:0002822,GO:0002823,GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0007162,GO:0008150,GO:0008285,GO:0016020,GO:0022407,GO:0022408,GO:0030155,GO:0030246,GO:0030247,GO:0032944,GO:0032945,GO:0042127,GO:0042129,GO:0042130,GO:0044464,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050670,GO:0050672,GO:0050776,GO:0050777,GO:0050789,GO:0050794,GO:0050863,GO:0050865,GO:0050866,GO:0050868,GO:0051249,GO:0051250,GO:0065007,GO:0070663,GO:0070664,GO:0071944,GO:1903037,GO:1903038
Exons1
Evalue1.9e-19
EggNOG OGsKOG4297@1|root,KOG4297@2759|Eukaryota,39X2I@33154|Opisthokonta,3BNNA@33208|Metazoa,3D2YV@33213|Bilateria,489XX@7711|Chordata,493J4@7742|Vertebrata,4CBKG@8459|Testudines
DescriptionC-type lectin domain family 4 member G-like
Cds size342
COG categoryTV
BRITEko00000,ko04091
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388002.3993802-CDS-H-akashiwo_Contig830:119145..1194871681388002.3993802-CDS-H-akashiwo_Contig830:119145..119487Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig830 119146..119487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig830.1.1prot_H-akashiwo_Contig830.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig830 119146..119487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig830.1.1

>prot_H-akashiwo_Contig830.1.1 ID=prot_H-akashiwo_Contig830.1.1|Name=mRNA_H-akashiwo_Contig830.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=114bp
EGCATGTEIGGACYYYNEDSLGRDDAQTACEALGGMLASIDSSDVDSEVL
DLTGGTTAWIGLNDESTEGTYVWADGTSVGDYTNWNSGEPNDWGDSEDCV
EMTSSGGWNDNSCS
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mRNA from alignment at H-akashiwo_Contig830:119146..119487+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig830.1.1 ID=mRNA_H-akashiwo_Contig830.1.1|Name=mRNA_H-akashiwo_Contig830.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=342bp|location=Sequence derived from alignment at H-akashiwo_Contig830:119146..119487+ (Heterosigma akashiwo CCMP452)
GAAGGCTGCGCTACTGGCACTGAGATCGGCGGGGCATGCTACTACTACAA
CGAGGACAGCCTCGGCCGCGATGACGCCCAAACTGCCTGCGAAGCTCTTG
GCGGCATGCTGGCGTCTATCGATTCCAGTGATGTTGATTCCGAGGTCTTG
GACCTGACTGGAGGCACGACTGCGTGGATTGGTCTGAACGACGAGAGCAC
CGAGGGCACCTACGTGTGGGCCGACGGCACTTCGGTGGGGGACTACACCA
ATTGGAACTCTGGTGAACCCAACGACTGGGGGGACTCTGAAGACTGCGTG
GAGATGACCTCTAGCGGTGGCTGGAACGACAACTCCTGCTCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig830:119146..119487+

>mRNA_H-akashiwo_Contig830.1.1 ID=mRNA_H-akashiwo_Contig830.1.1|Name=mRNA_H-akashiwo_Contig830.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=342bp|location=Sequence derived from alignment at H-akashiwo_Contig830:119146..119487+ (Heterosigma akashiwo CCMP452)
GAAGGCTGCGCTACTGGCACTGAGATCGGCGGGGCATGCTACTACTACAA
CGAGGACAGCCTCGGCCGCGATGACGCCCAAACTGCCTGCGAAGCTCTTG
GCGGCATGCTGGCGTCTATCGATTCCAGTGATGTTGATTCCGAGGTCTTG
GACCTGACTGGAGGCACGACTGCGTGGATTGGTCTGAACGACGAGAGCAC
CGAGGGCACCTACGTGTGGGCCGACGGCACTTCGGTGGGGGACTACACCA
ATTGGAACTCTGGTGAACCCAACGACTGGGGGGACTCTGAAGACTGCGTG
GAGATGACCTCTAGCGGTGGCTGGAACGACAACTCCTGCTCC
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