mRNA_H-akashiwo_Contig83.11.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig83.11.1
Unique NamemRNA_H-akashiwo_Contig83.11.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig83.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig83contigH-akashiwo_Contig83:246150..246498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size162
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size159
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388000.675068-CDS-H-akashiwo_Contig83:246149..2462111681388000.675068-CDS-H-akashiwo_Contig83:246149..246211Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig83 246150..246211 +
1681388000.686487-CDS-H-akashiwo_Contig83:246399..2464961681388000.686487-CDS-H-akashiwo_Contig83:246399..246496Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig83 246400..246496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig83.11.1prot_H-akashiwo_Contig83.11.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig83 246150..246496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig83.11.1

>prot_H-akashiwo_Contig83.11.1 ID=prot_H-akashiwo_Contig83.11.1|Name=mRNA_H-akashiwo_Contig83.11.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=53bp
HSNRSYLKFIPSMYSGQISHWKNGKPEIEDLLSLPERHKAQANQQTARSV
AHN
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mRNA from alignment at H-akashiwo_Contig83:246150..246498+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig83.11.1 ID=mRNA_H-akashiwo_Contig83.11.1|Name=mRNA_H-akashiwo_Contig83.11.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=349bp|location=Sequence derived from alignment at H-akashiwo_Contig83:246150..246498+ (Heterosigma akashiwo CCMP452)
CACTCCAATCGTAGCTACTTGAAGTTCATACCTAGCATGTATTCTGGTCA
GATTTCTCATTGGTACGTTTGGATGTGCACAGCATCAGCCCAAAGTTTAT
ATTTTCATTTTTTCTCGAGAATGGCGCAGGCGTCAAATTACGTGCGATCC
AGAGCCTTGCTTGACCGTTCACTCATGTGTTACTAGGATAGGACTATGAA
GAACAATGACATTAGTTCAAAGCATGTTTTTTTTTGCCCCTGGTTTGCAG
GAAAAATGGAAAACCTGAGATCGAGGACTTGCTTTCTTTGCCTGAGCGTC
ACAAAGCACAAGCAAACCAGCAAACAGCACGAAGTGTGGCCCACAATAC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig83:246150..246498+

>mRNA_H-akashiwo_Contig83.11.1 ID=mRNA_H-akashiwo_Contig83.11.1|Name=mRNA_H-akashiwo_Contig83.11.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=159bp|location=Sequence derived from alignment at H-akashiwo_Contig83:246150..246498+ (Heterosigma akashiwo CCMP452)
CACTCCAATCGTAGCTACTTGAAGTTCATACCTAGCATGTATTCTGGTCA
GATTTCTCATTGGAAAAATGGAAAACCTGAGATCGAGGACTTGCTTTCTT
TGCCTGAGCGTCACAAAGCACAAGCAAACCAGCAAACAGCACGAAGTGTG
GCCCACAAT
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