mRNA_H-akashiwo_Contig821.8.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig821.8.1
Unique NamemRNA_H-akashiwo_Contig821.8.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig821.8.1 vs. uniprot
Match: A0A7S3XT20_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XT20_HETAK)

HSP 1 Score: 156 bits (394), Expect = 3.710e-46
Identity = 84/87 (96.55%), Postives = 84/87 (96.55%), Query Frame = 1 
Query:    1 GTSEYARVA---MAGALGSVPQLLAQRTLTRYKRSEDGASIEALELLKYYPVNTGMSVPDGEPYLVVKSRLRLARPSSAAAATTKQQ 252
            GTSEYARVA   MAGALGSVPQLLAQRTLTRYKRSEDGASIEALELLKYYPVNTGMSVPDGEPYLVVKSRLRLARPSSAAAATTKQQ
Sbjct:   66 GTSEYARVAEASMAGALGSVPQLLAQRTLTRYKRSEDGASIEALELLKYYPVNTGMSVPDGEPYLVVKSRLRLARPSSAAAATTKQQ 152
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BLAST of mRNA_H-akashiwo_Contig821.8.1 vs. uniprot
Match: A0A7S3XT05_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XT05_HETAK)

HSP 1 Score: 113 bits (283), Expect = 7.080e-30
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1 
Query:   82 RYKRSEDGASIEALELLKYYPVNTGMSVPDGEPYLVVKSRLRLARPSSAAAATTKQQ 252
            RYKRSEDGASIEALELLKYYPVNTGMSVPDGEPYLVVKSRLRLARPSSAAAATTKQQ
Sbjct:   53 RYKRSEDGASIEALELLKYYPVNTGMSVPDGEPYLVVKSRLRLARPSSAAAATTKQQ 109
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig821.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3XT20_HETAK3.710e-4696.55Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3XT05_HETAK7.080e-30100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig821contigH-akashiwo_Contig821:412069..419415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size442
Hectar predicted targeting categoryother localisation
Exons3
Cds size228
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387998.597375-UTR-H-akashiwo_Contig821:412068..4120951681387998.597375-UTR-H-akashiwo_Contig821:412068..412095Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig821 412069..412095 +
1681387998.644337-UTR-H-akashiwo_Contig821:419228..4194151681387998.644337-UTR-H-akashiwo_Contig821:419228..419415Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig821 419229..419415 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387998.6090035-CDS-H-akashiwo_Contig821:412095..4121251681387998.6090035-CDS-H-akashiwo_Contig821:412095..412125Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig821 412096..412125 +
1681387998.6196496-CDS-H-akashiwo_Contig821:415249..4152751681387998.6196496-CDS-H-akashiwo_Contig821:415249..415275Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig821 415250..415275 +
1681387998.6311293-CDS-H-akashiwo_Contig821:419056..4192281681387998.6311293-CDS-H-akashiwo_Contig821:419056..419228Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig821 419057..419228 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig821.8.1prot_H-akashiwo_Contig821.8.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig821 412096..419228 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig821.8.1

>prot_H-akashiwo_Contig821.8.1 ID=prot_H-akashiwo_Contig821.8.1|Name=mRNA_H-akashiwo_Contig821.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=76bp
MAGALGSVPQLLAQRTLTRYKRSEDGASIEALELLKYYPVNTGMSVPDGE
PYLVVKSRLRLARPSSAAAATTKQQ*
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mRNA from alignment at H-akashiwo_Contig821:412069..419415+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig821.8.1 ID=mRNA_H-akashiwo_Contig821.8.1|Name=mRNA_H-akashiwo_Contig821.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=7347bp|location=Sequence derived from alignment at H-akashiwo_Contig821:412069..419415+ (Heterosigma akashiwo CCMP452)
GGCACAAGTGAGTATGCTCGTGTTGCAATGGCAGGGGCGCTGGGCTCTGT
TCCCCAGGTAATGCTGACTTCATCACCAGGACTGTATGATTTATTATTTA
TAAATAAATAATATAATATAAGATTGCAGGGTGTTGGGTCTAAACTATTA
TAATAATGATTATTGATGCCCTTCATGGATGAAGCCACTGTCGTTTGCAA
TGGCGGTCACAATGCACCATTTACAGAACAACAATGAACAGCACCGACGG
TGATGAGTACTCTCCCGCTCATCAGGGGTTCGTCAACTGAGATAACCCCG
CACCAGTGCGGGGGCACCATCTCGGCGGTAGGCTGGAGGAGCGCCAAATA
AGCTGGTCCCAATTCTGCTTGCAGATCCAGACATCTACTCAAAGAACAGT
TGAGCTTAGCTTTGGAACGTCAGTTCACATGTTCAGGTCATGGATTTTCG
TCTGTGGCTCATGACCGACACCTGTGCTTGGCTGCGATGATGATGCTTAG
ATTAGTTGTTAACATGGAGGAGAAGGAGGGCAGAATGTTTCCTTAAGTAT
GTAGCTGTTTTCAGTTAACAGCTGGCTGAGGATCAAAGATGACTGGTGTT
GGTGGTGGCCCGTCTGCTGATGCTGCTTTTAATTTTTTGTTGTGCATTCC
ACTCTTCTTCTTTCATTTCCCATCTTTATTTGTTGGTTTATCATTTATAC
TGAGAGGCAGCCTGAAAAGGCGGGTTGGGGCACGGGGTTTGGAAGGAGCA
AAGCCACCAGCCATGGCTTTTTAGTAGCGAAATGCAGCATAGTTGCCATG
GAGTTATAACAATTTTAAAAACCTTTGACATATCGCCTTCTTGGCAATAT
GGAGCTATACTCACTGATGATGAAAGTGTGTTTTTTCTGTTTGAACCCAA
CACCCTGCTGCAAAATTATTATTATTATTATTATTATATAAATATTTATT
ATACTTAGTAGTACTACAGTACACAGAAGATTAATGCGCTTATCATAGCT
CACTCAGCACTGCCAGCTTGCTTAATGTAGCCATCTACAGCTCTGACAAC
TACAATACAGTACTTATTTCAATGCTGAGATGAGCAAGTCAGAGTACCGA
CACACAACAGTACACTTGTACCAGCGCGAGGTCTGAGAGAACTAAAAAGT
ATATTATCCTCATCATCAATCATCAGCATCATATTGACTTTCTCAGAAGA
AAGAAAATGAAGTATACAAAATTATTTGGACGAATCACGAATAAATCAAA
GGAGCATTATCACTGTCTGTTAAAGGTTACAATGTTTCGGGAAGTATATC
AATTTAAGAAAATGGCTGCTCTGAAGAATGAGGCTATATAGCTATGATGT
TTATTATCATGGAAGACTCCATTTCTGCTTCGATAATAGGTTGTAAGAGT
CCTATCATTGTCAGTATCTCCGGAGTCGCTTCAATGGATAATCCTGCTTT
CCATAATATATAGATGAATGTCTGCTTCAAAACATTATCATCAGGCATAC
ACTACTACACATGTATGCTATATAGAGTTTATGTGATTTTTATTCTTTCT
AACGGCCACAAAAGAACAGCAGTAGTATCATCCTTTATTAACTCGACCAA
AGTGGGTGTTCTAAGACACAAAGAATGAACTATGCATACTGTGAAAACAA
AAAAACAAAACAAAAAACTAAGTAAACACCCCCCCAAAAAATGAGAAGAG
AATGATGGCGATGAGCAATATAACAACAATGCTGCACGCGGCAAAAAAGG
CGTATTGATTGTTTTTTGGCAGTCTCTGTCAAGACAGGGGTTATAATCAT
TTTTATTTACATTATCTACCTTGATATTGAGGCCTTTGGCGTGGAGTAGA
TCTAGCACTGGTCCAGGCTCTCTCAGTTACAAACTGCCGAAGGTAGATGT
GCTTTGCATGACTTGATTTTGGCCGTGGAGGGAGCAAAAGATGGGGCTGT
TGGGAGCTTGGTTCACTCGATCCTTGCTGAGGTGAATGATGAAGCTGTGG
CATTTCATGAGAAGGAGAGAGGTCCGTATGGTGAACTTGGCTTCATGATT
CCGTGTTCCTGGCTCCTGGAAGAGGCAGGTCTCATGAAGAGGATGAAAAG
AGAAGCTGGTGAGGACCGCTAAGCAGGAGTTACTGCAGCTTGAAGACGTA
GTAGGTAGGTATATATTATTATTATCTAGTATGCAGATTTTAGCTAGTTT
ATCAAAGTGGGTATGTGTGAAGGAGTGATACCAAGATGCAAGGTGTAGAT
TTTTTTTATTAAATTTAACCCACTACATATTATAGTAAATAAATATATAA
TAATAATAATATAATAATAATATCACTCTCCATTTCTTTTGGGTGTTTCG
CAGTAGAGAAGAAGGACAAGCGAAGAAGAGGGGGTGGGGTAACCGATGCT
CTTGCTTTTTTTTTTTTTGAGCTGCTTGGTGTTGTTGTGGAGACCGTCTT
CATTGCGTTTGATGGGGCTGGGTTGGATTTGGCTAGTTCGGTGACTCTGC
GAAGAGAATATGACTGCATGTCGAAACATTGGGAGCTGAAgGGGCGtATC
ATTTACTAGAAGATTGTATATACTTGTTCCAATCCATCGGTGATCATTTT
TCTAATCATTTTCTAATCACTTTTTCTAACCGCTTAAATCATACATATAT
ATATATATTCTTCAAAAAAGAATTTCTCTATATGGTGCTATCCCCTGATT
AGTGAGCTGCCAGCAGGGGAAAAGGTGCGGACATATGCTACGTACAACAT
GAACTCATGCAACGAATCAGTTAATAAAAGGAGTATTATAATCACTGTCT
GTTAAAGGGTTTCAAGGTTTCGGGTTTCACTTTCATCGGAGGTAGATCAC
AAAGCTATCTCAGAAGAAATCTCATTTCAGAATAAATGAAAGTCGACCTC
CAGCATTTGGAAAAACAACGCGAAGATAGACCTCCATATCCGCCAACAGA
ACTGACAACATCATCCACGGGCGGAAGCAGAATTGACCGATAGGCAGCTC
ATTTATGTAAGGGGAAAGCACCATTTATATAGTATAAAGAAGCAATATTT
ATTACTTTTGGTGCTTTATTTTTCATTTGCTTTTGTTTGTTTGTTGTTTG
TTTTTTCCCCTCTCTTTCCTCCTTGCCTATGAAATCATCAATTACTGCCA
AAAACCACCCCTTCATCATTTGTGTGTCAAGCTACTAGCTCAGCGCACGT
TAACCAGGTATACATTTGCCTTCGTTAATACACCAATCCCGCATATTATA
CATGTAAACAACATGATTAATATGACCATTCAGCAGGGCTATGAGGATTC
CAAAAGGAAGACGTTATCCTAGTCTAATGCCTCACGAACCACCATCAAAA
CTGAAAAGGCCAGGGCCAAATTATTGCAATAGCGCGTGAAATACAATATA
TATCATGAAGCTTTAATTTTGTGATTCCAATATTTTAATAAGATCTGTTA
CAAACCAGTTTCGGCTAAAAAAAGCCATCCTCAGTCATGAATTGTCAACA
AGCTATGTTGTCAAACACTATCATCAGTTCCTGGGACCGCCGCTGGAAGA
GGAGATCAAGGAATCACTTCACAGCAATCCATGCTGGGCTGTCAACGACC
TGATGATAATCCTAGGGGAGGGCGACGAGAGGGTGAAGGCTTGCCAGAGG
TGGAGAGAGAGGTTCGACAAGGGGCGCAAGGTTGATGGTGGGGGTGCAGG
GCAAGGGATCTTGAGGCCAGCGGGCACTGCTCAGGAGGAGTGAGAGACTG
ATGAAGAAGCAGCACCGGTGCTGGCACACTGATGAGGAGAACTTGGATGG
GATCTGTGTGCGGATAGGAGCGGTGCTGTTGGGCAACCAGTTGGGCACCA
GGGAGGGTTACTCTGTTAGTCTAGGATGTTTAGAAGAGAAGGAGTCCAAG
TAGAAGGGGCGAGTGAGAACAACAAGGAAAATGATGATGTGAGTCTTGGG
AAACAGTTTTCTTTTTTCCTTTCTTCTTTTTTTTCCTTTTACGTTTTCGC
AGTGGAGTGGAAGGAGGATGGTAGAAGAAGGGGTAGGGTAACTGATGCGG
TTGCAGGTTTTGTGTCGTGTCAGCTGCTTGGTGTTGTTGTGGAGACCGCC
GTCATTACTCGTGATGGGGCTGGGTTGGATTTGGCCTATACTTATATATA
TATATTTTTTATCAATATATAACTGGTGACTCTGTGAAGAAGGCATGACT
GCATGTCGAAACGTTGGGAGCTTGAGAGGCGTATCATTTTCTTGAAGATT
CCATAATATTTTCAACCCACTGGTGATCATTTTTCTTCATTTTATTTTGG
GGGGGGTTGGTTTGTTTTGTTTTGTTTTCATTTTAGAGGAGGAAACTGTC
GTTGCGATGAACCTCGGGCCGCAAGTTCGAGCCCCAAGGTGTGCGTGCAG
TCAACAATTTTTGAAACGGTTTGGACCATGGGCTAGTCATCGGATCTCGG
AAGTCGGAGGAGGGCAAGGAAAGGATACGATACCGATCTGGAGCAGTGGC
GTGGTGGATGGAGAAAGCGCCGGAAGCTCCAGGAGTGGGCGACTTGCGGA
TGGCTAGAGCGACCTACCTGACAGACTGGTAACAGGGTCGGCAGCGATGG
ATGGTGGCCCGAGGTGCATCAAAGGGATGTTCGTGAGTCTGGGAAGGCCA
TACGAGGGCCGGCGCCGGTCTCACGTTGACAAGCTCAGAGATGGCTCAAA
ATGCAGTTGGCTGGTACAGAGGACCTTCCTCAGGATGTGTGATGAGAGCA
TGAGAATGTATAAAAAATATTGATTAATAAGACCATCCATCAAGGCATAG
GAAATTCCAAAAGGAAGACGTTGATCCAGTCTAATGCTGCACGGACATCA
TGAAAGCTAAAAGGCCAAGGCCAAAAATACTGCTATAGCGCATGAAATAC
AACATCATGAAACTATAATGTGTGATTCCAATATTTTAAAAGGACTGTTG
CAGACCGGTTTCGGCTATAAAAGCCATCGTCAGTACAACTAGTGTCCAAA
AATGAATGGGAATGTGTATGAGCCAACTACTACCAGCAACTAACTACTAC
TACATCCAATCACAGCATCATCAGCACTCTCTTAAACAACAACTCGAAAT
GGAAGCCCTTCTCCTCCTTATATAATCATTTTTTATTATTGCAGGGTGTT
TGGTCTGAACAGAGACCGCTTTCATCATCAGAGAGTATAGCTCCACACTG
CCAAGAAGGCAATATATGTCAAAAGGTTTTCAAATCATTAAGTCCATGAC
AACTATGCTGCATTTCGGCTACTGCAAGCCACGGCTGGCGGCTCTCTCCT
TCCTCCGCCAGCCTTCATCAGGCTGCCTTTGACCAATTATTAACCAAGTG
AGGATGGGAAATGAAGAAAGGAGAAAGAAGAAGTGCACAAACACAAACGA
GAAGAAGCAGCAACGGTAGGAACCACCACCACCATTCATCCATGTTTTTC
ATGTTTACCCCAGCTGTCAACTGAAGCAGCAACATACTTAAGGAAACATT
CTGCCCTCCTTCTCCTCCATGTTCACAACAAATCCGAGCATCATCATCAT
GTTCACAACAAATCCGAGCATCATCATCATAACCGGCACAGGTGCTGGTC
ACGAGCCTCAGACAAAAGTCCAGGGCCTGAAGAAAGCTAAGCTCAACTGT
TTTGTGGTTAGATCTGGATCCGCGTACGGAATTGGGGCCACTAGGATGGT
CTTCCTCCAGCCTACCACCCGGGACTATACAGCCTGCAACCAGTGCAGGG
TTATCCCGGTTGATGGAACCCATGATGAGCAGGAGCCCACCACCATCGGT
TGCTGATCGATATTACTGCACAGAGATTTGTGTAATAAAAAAAAAAAAAA
CTACTCTACTGCTCACACATTTTTCATGAAAAATACTGCGCTTGCCAAAT
TCGTGCCCACCAAGATTATTACTCTCTTTCTCTCTCTCTACTGTTTAGCA
TTTATACGTCTTAGAAGATAATCTGTGAGAAGATGTTGTCGCAGAACAGG
GTTGTGGCATGAAATTGTTCCATATTCCCGGGATCCTAGCTCTGTGGCAT
CTATTTCGAAAGTTGCCAGTGGGGTGGCAGAAGGCATGCTATTGGTTCCA
TAATATGGACTTTGTCGTCTATATGTATGTATGTATATACACACACCATA
CTTCATGCTCTTCATGGTGCTGGTTCTCCGTCCCCATATCTTTGACAGGC
GGTGTTACTTTCACGGTTGCTAACCGAGATCGCACCGGTCCATACTTGCG
GGATAGTTCCGTCAGGCGTGGCGCATTTCCGGGTCTAGGGCCGCCTGGTC
CGTGTTCATTCTCGTCTCACGTCGACATTCCCCCGCTAATTTCTCTATCA
TTCTTGTTCTCGAATTTCGAAGCGCGCGCGAGGTGGGTGAGTTGCCTCTT
TGAAGGGCTCGAACCCACGACCTCTTGCTTACTCCGAAAGTCGGATTTTC
GAACGATTGAGCTATTCCGGGTTATGTATATTATATGTTGTAATATATAT
TCAGGAGCTGAACGATGATCTGCAGCGCCTCCATGAGTTTGGCAAGGAGT
GGCTACTATAGAATTCGAACCTACATACCAAATCCCAGGAGCTGATTATC
ACTATCTTGGTTGCATTCAGGAGCTGAACGATGATCTGCAGCGCATCTAT
GAGTTTGGTAAGGAGTGGCTACTAGAGTTTGAACCTATCAAATCCCAGGA
GCTGATCATCGCCAACTTGGTTGCAGATGATAACAAGGTGACGCACCCTC
CTCTATCCATGGGGGGTTGATGAAGAGAAGGAGCAGCTGGAGGCGCTGGG
CTTCACCATTGATCCGCGAGGTAAGTGGTCCCTGCATGCCGAGGCAGTAG
CCAAGGAGGCGGCCCCTCTATCATCCCTACCACCACCTCCAACATTACTG
ATGCTGCTTCTGCTGTGGCGTATTACGTTTTTTCATCCTCTTTTTTTTCT
CCCTGGCCATCATCGTTCCACCACCACCTTCGCCAAAGATACAAGCGGTC
CGAGGACGGCGCCAGCATCGAGGCCCTCGAGCTCCTCAAGTACTACCCCG
TGAACACGGGGATGTCCGTGCCCGATGGGGAGCCCTACCTGGTCGTCAAG
TCACGGCTGCGCCTTGCGCGCCCCTCCTCCGCTGCTGCTGCAACAACAAA
GCAGCAATAGTATTAATTGCTGCTCTGTTGTATATATAGAATAGATATAT
AGTCGACAGTTTCCAGCTTGTCAAGACCAGAGATTCAATCATTACCTAAA
TACTTGACGCAACTTATTTATCTGACTAGATGTATTTAGATAGACTGCCA
TCATTGATTACTCAATTTGCCACTCTCACCACCCTCATTACAGCAGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig821:412069..419415+

>mRNA_H-akashiwo_Contig821.8.1 ID=mRNA_H-akashiwo_Contig821.8.1|Name=mRNA_H-akashiwo_Contig821.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=228bp|location=Sequence derived from alignment at H-akashiwo_Contig821:412069..419415+ (Heterosigma akashiwo CCMP452)
ATGGCAGGGGCGCTGGGCTCTGTTCCCCAGCTACTAGCTCAGCGCACGTT
AACCAGATACAAGCGGTCCGAGGACGGCGCCAGCATCGAGGCCCTCGAGC
TCCTCAAGTACTACCCCGTGAACACGGGGATGTCCGTGCCCGATGGGGAG
CCCTACCTGGTCGTCAAGTCACGGCTGCGCCTTGCGCGCCCCTCCTCCGC
TGCTGCTGCAACAACAAAGCAGCAATAG
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