mRNA_H-akashiwo_Contig82.18.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig82.18.1
Unique NamemRNA_H-akashiwo_Contig82.18.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig82.18.1 vs. uniprot
Match: A0A6V2ZSX1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2ZSX1_HETAK)

HSP 1 Score: 124 bits (310), Expect = 1.060e-29
Identity = 68/72 (94.44%), Postives = 68/72 (94.44%), Query Frame = 2 
Query:    2 IFVMMEHALFGVKFVLASVVEDTPEFAEVQLARVEFLEGKVINDIADEDDXXXGGLGDNDNGFSLLVQWRGP 217
            IFVMMEHALFGVKFVLASVVEDTPEFAEVQLARVEFLEGKVINDIADEDDXXXGGLGDNDNGFSLLV    P
Sbjct:  717 IFVMMEHALFGVKFVLASVVEDTPEFAEVQLARVEFLEGKVINDIADEDDXXXGGLGDNDNGFSLLVHDEDP 788
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig82.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6V2ZSX1_HETAK1.060e-2994.44Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig82contigH-akashiwo_Contig82:724981..725849 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size506
Hectar predicted targeting categoryother localisation
Exons2
Cds size396
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387997.3073099-UTR-H-akashiwo_Contig82:724980..7250801681387997.3073099-UTR-H-akashiwo_Contig82:724980..725080Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig82 724981..725080 -
1681387997.3476882-UTR-H-akashiwo_Contig82:725839..7258491681387997.3476882-UTR-H-akashiwo_Contig82:725839..725849Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig82 725840..725849 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387997.3241603-CDS-H-akashiwo_Contig82:725080..7253651681387997.3241603-CDS-H-akashiwo_Contig82:725080..725365Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig82 725081..725365 -
1681387997.3370209-CDS-H-akashiwo_Contig82:725728..7258391681387997.3370209-CDS-H-akashiwo_Contig82:725728..725839Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig82 725729..725839 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig82.18.1prot_H-akashiwo_Contig82.18.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig82 725081..725839 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig82.18.1

>prot_H-akashiwo_Contig82.18.1 ID=prot_H-akashiwo_Contig82.18.1|Name=mRNA_H-akashiwo_Contig82.18.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=132bp
MMEHALFGVKFVLASVVEDTPEFAEVQLARVEFLEGKVINDIADEDDDDD
GGLGDNDNGFSLLVQWRGPDLLKRGDAKDQRVLACCSPPIHILAAFEQQV
TDLLANVLSIVSTGLWFGRLLVAKLAVCCIF*
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mRNA from alignment at H-akashiwo_Contig82:724981..725849-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig82.18.1 ID=mRNA_H-akashiwo_Contig82.18.1|Name=mRNA_H-akashiwo_Contig82.18.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=869bp|location=Sequence derived from alignment at H-akashiwo_Contig82:724981..725849- (Heterosigma akashiwo CCMP452)
GATCTTCGTGATGATGGAGCACGCGCTCTTCGGGGTCAAGTTCGTGCTGG
CGAGCGTGGTGGAGGACACGCCCGAGTTCGCGGAGGTGCAGCTGGCGCGC
GTGGAGTTCCTGGAGGGCAAGGTGGGCGGCGGCGCGCGCATTGTTGGAGT
ACGTAGTTAAATTAGCCCCCCCCCATGTTTTCCCCTTCCTATACATCTTG
CATATGGCACCGCGAGTGACAGGTGCCCTTCCATTCGTGCTCCGCACCAA
TCTATTACTAAAAACTGATCGTTGTGGTTTCTGGACACCAGCCCTCAAGT
TCTGTATACTATGATAGGGTTTTTTCCCCGGGCCATGATAGGGTTCAGCC
CCGACCTCTCACTAGGGAAAGAGCCCCCCCCCCTGCATACCATGCTCCTA
CCAAAGAAGAAGTAAAGAAGCCTCCTCTTCACCCCTCCATTCTCCCTGGC
GGCCATCCCCGCTTCCTGTCTGATGCTGCCATAGGTGATCAACGACATTG
CGGACGAGGACGACGACGACGACGGTGGGCTCGGGGACAACGACAACGGG
TTCAGTCTCCTTGTGCAATGGCGAGGACCCGACCTGCTGAAAAGGGGGGA
CGCGAAAGACCAGAGGGTGTTGGCCTGCTGTTCTCCTCCAATCCATATCC
TTGCTGCGTTTGAACAGCAAGTTACAGATTTGTTGGCCAATGTCCTGTCG
ATTGTCAGCACCGGCCTGTGGTTTGGGAGACTTCTTGTCGCAAAACTTGC
AGTTTGTTGCATATTTTGAACGGGGCCAACAAGGGGCAGATAGTAGTGTG
GTAGTAGCAGAAGTCAGCGGCCATAAAATTGAGATCAGCTATCTCCATTT
CATTAAAGAATATCATCTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig82:724981..725849-

>mRNA_H-akashiwo_Contig82.18.1 ID=mRNA_H-akashiwo_Contig82.18.1|Name=mRNA_H-akashiwo_Contig82.18.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=396bp|location=Sequence derived from alignment at H-akashiwo_Contig82:724981..725849- (Heterosigma akashiwo CCMP452)
ATGATGGAGCACGCGCTCTTCGGGGTCAAGTTCGTGCTGGCGAGCGTGGT
GGAGGACACGCCCGAGTTCGCGGAGGTGCAGCTGGCGCGCGTGGAGTTCC
TGGAGGGCAAGGTGATCAACGACATTGCGGACGAGGACGACGACGACGAC
GGTGGGCTCGGGGACAACGACAACGGGTTCAGTCTCCTTGTGCAATGGCG
AGGACCCGACCTGCTGAAAAGGGGGGACGCGAAAGACCAGAGGGTGTTGG
CCTGCTGTTCTCCTCCAATCCATATCCTTGCTGCGTTTGAACAGCAAGTT
ACAGATTTGTTGGCCAATGTCCTGTCGATTGTCAGCACCGGCCTGTGGTT
TGGGAGACTTCTTGTCGCAAAACTTGCAGTTTGTTGCATATTTTGA
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