mRNA_H-akashiwo_Contig816.10.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig816.10.1
Unique NamemRNA_H-akashiwo_Contig816.10.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig816.10.1 vs. uniprot
Match: A0A7S2UZ09_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ09_9STRA)

HSP 1 Score: 190 bits (482), Expect = 1.560e-60
Identity = 90/94 (95.74%), Postives = 93/94 (98.94%), Query Frame = 1 
Query:    1 MNEEEEKRFLVTVIKDLLGLCEMKRGKDNKAVIAANIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHEKHPGVQDMACDTFLKIAAKCKRKFVT 282
            MNEEEEKRFLVTVIKDLLGLCEMKRGKDNKAV+A+NIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHEKHPGVQDMAC+TFLKIA KCKRKFVT
Sbjct:   25 MNEEEEKRFLVTVIKDLLGLCEMKRGKDNKAVVASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHEKHPGVQDMACNTFLKIANKCKRKFVT 118
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BLAST of mRNA_H-akashiwo_Contig816.10.1 vs. uniprot
Match: A0A7S0AX47_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AX47_9STRA)

HSP 1 Score: 186 bits (472), Expect = 2.270e-58
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 1 
Query:    1 MNEEEEKRFLVTVIKDLLGLCEMKRGKDNKAVIAANIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHEKHPGVQDMACDTFLKIAAKCKRKFVT 282
            M+EEEEKRFLVTVIKDLLGLCE KRGKDNKAVIA+NIMYVVGQYPRFL+AHWKFLKTVVNKLFEFMHE HPGVQDMACDTFLKIA KCKRKFVT
Sbjct:   84 MSEEEEKRFLVTVIKDLLGLCEQKRGKDNKAVIASNIMYVVGQYPRFLKAHWKFLKTVVNKLFEFMHESHPGVQDMACDTFLKIATKCKRKFVT 177
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BLAST of mRNA_H-akashiwo_Contig816.10.1 vs. uniprot
Match: A0A6A5A5T2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A5T2_9STRA)

HSP 1 Score: 181 bits (459), Expect = 3.760e-56
Identity = 85/93 (91.40%), Postives = 90/93 (96.77%), Query Frame = 1 
Query:    1 MNEEEEKRFLVTVIKDLLGLCEMKRGKDNKAVIAANIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHEKHPGVQDMACDTFLKIAAKCKRKFV 279
            M+EE EKRFLVTVIKDLLGLCEMK+GKDNKAV+A+NIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHE HPGVQDMACDTFLKIA KC+RKFV
Sbjct:   65 MSEENEKRFLVTVIKDLLGLCEMKQGKDNKAVVASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHELHPGVQDMACDTFLKIAQKCRRKFV 157
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BLAST of mRNA_H-akashiwo_Contig816.10.1 vs. uniprot
Match: A0A4W5LUE1_9TELE (Uncharacterized protein n=2 Tax=Euteleostomi TaxID=117571 RepID=A0A4W5LUE1_9TELE)

HSP 1 Score: 175 bits (444), Expect = 2.060e-54
Identity = 81/93 (87.10%), Postives = 88/93 (94.62%), Query Frame = 1 
Query:    1 MNEEEEKRFLVTVIKDLLGLCEMKRGKDNKAVIAANIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHEKHPGVQDMACDTFLKIAAKCKRKFV 279
            M+EE+EKRFLVTVIKDLLGLCE KRGKDNKA+IA+NIMY+VGQYPRFLRAHWKFLKTVVNKLFEFMHE H GVQDMACDTF+KIA KC+R FV
Sbjct:   33 MHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFV 125
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BLAST of mRNA_H-akashiwo_Contig816.10.1 vs. uniprot
Match: A0A171A859_TRIIF (Exportin-1 (Fragment) n=1 Tax=Triatoma infestans TaxID=30076 RepID=A0A171A859_TRIIF)

HSP 1 Score: 174 bits (440), Expect = 9.790e-54
Identity = 80/94 (85.11%), Postives = 89/94 (94.68%), Query Frame = 1 
Query:    1 MNEEEEKRFLVTVIKDLLGLCEMKRGKDNKAVIAANIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHEKHPGVQDMACDTFLKIAAKCKRKFVT 282
            M+EE+EKRFLVTVIK+LLGLCE K+GKDNKA+IA+NIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHE H GVQDMACDTF+KI+ KC+R FVT
Sbjct:   42 MHEEDEKRFLVTVIKELLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKISMKCRRHFVT 135
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BLAST of mRNA_H-akashiwo_Contig816.10.1 vs. uniprot
Match: A0A397BVF9_9STRA (CRM1_C domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BVF9_9STRA)

HSP 1 Score: 182 bits (463), Expect = 1.360e-53
Identity = 86/93 (92.47%), Postives = 90/93 (96.77%), Query Frame = 1 
Query:    1 MNEEEEKRFLVTVIKDLLGLCEMKRGKDNKAVIAANIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHEKHPGVQDMACDTFLKIAAKCKRKFV 279
            M+EE EKRFLVTVIKDLLGLCEMKRGKDNKAV+A+NIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHE HPGVQDMACDTFLKIA KC+RKFV
Sbjct:    1 MSEENEKRFLVTVIKDLLGLCEMKRGKDNKAVVASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHELHPGVQDMACDTFLKIAQKCRRKFV 93
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BLAST of mRNA_H-akashiwo_Contig816.10.1 vs. uniprot
Match: F6YA11_MOUSE (Exportin-1 (Fragment) n=1 Tax=Mus musculus TaxID=10090 RepID=F6YA11_MOUSE)

HSP 1 Score: 175 bits (444), Expect = 1.430e-53
Identity = 81/93 (87.10%), Postives = 88/93 (94.62%), Query Frame = 1 
Query:    1 MNEEEEKRFLVTVIKDLLGLCEMKRGKDNKAVIAANIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHEKHPGVQDMACDTFLKIAAKCKRKFV 279
            M+EE+EKRFLVTVIKDLLGLCE KRGKDNKA+IA+NIMY+VGQYPRFLRAHWKFLKTVVNKLFEFMHE H GVQDMACDTF+KIA KC+R FV
Sbjct:   15 MHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFV 107
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BLAST of mRNA_H-akashiwo_Contig816.10.1 vs. uniprot
Match: A6QXB1_AJECN (Uncharacterized protein n=1 Tax=Ajellomyces capsulatus (strain NAm1 / WU24) TaxID=2059318 RepID=A6QXB1_AJECN)

HSP 1 Score: 174 bits (440), Expect = 1.560e-53
Identity = 82/93 (88.17%), Postives = 87/93 (93.55%), Query Frame = 1 
Query:    1 MNEEEEKRFLVTVIKDLLGLCEMKRGKDNKAVIAANIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHEKHPGVQDMACDTFLKIAAKCKRKFV 279
            MNEE EKRFLVTVIKDLLGL EMKRGKDNKAV+A+NIMY+VGQYPRFL+AHWKFLKTVVNKLFEFMHE H GVQDMACDTF+KIA KCKR FV
Sbjct:   33 MNEETEKRFLVTVIKDLLGLTEMKRGKDNKAVVASNIMYIVGQYPRFLKAHWKFLKTVVNKLFEFMHETHEGVQDMACDTFIKIANKCKRHFV 125
[Close]
BLAST of mRNA_H-akashiwo_Contig816.10.1 vs. uniprot
Match: A0A7S2V9Y0_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2V9Y0_9STRA)

HSP 1 Score: 183 bits (465), Expect = 4.160e-53
Identity = 86/94 (91.49%), Postives = 90/94 (95.74%), Query Frame = 1 
Query:    1 MNEEEEKRFLVTVIKDLLGLCEMKRGKDNKAVIAANIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHEKHPGVQDMACDTFLKIAAKCKRKFVT 282
            M E+EEKRFLVTVIKDLLGLCE KRGKDNKAV+A+NIMYVVGQYPRFL+AHWKFLKTVVNKLFEFMHE HPGVQDMACDTFLKIA KCKRKFVT
Sbjct:   33 MAEDEEKRFLVTVIKDLLGLCEQKRGKDNKAVVASNIMYVVGQYPRFLKAHWKFLKTVVNKLFEFMHESHPGVQDMACDTFLKIAGKCKRKFVT 126
[Close]
BLAST of mRNA_H-akashiwo_Contig816.10.1 vs. uniprot
Match: A0A7S1YZM0_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YZM0_TRICV)

HSP 1 Score: 185 bits (469), Expect = 5.760e-53
Identity = 87/94 (92.55%), Postives = 91/94 (96.81%), Query Frame = 1 
Query:    1 MNEEEEKRFLVTVIKDLLGLCEMKRGKDNKAVIAANIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHEKHPGVQDMACDTFLKIAAKCKRKFVT 282
            M+E+EEKRFLVTVIKDLLGLCE KRGKDNKAVIA+NIMYVVGQYPRFL+AHWKFLKTVVNKLFEFMHE HPGVQDMACDTFLKIA KCKRKFVT
Sbjct:  530 MSEDEEKRFLVTVIKDLLGLCEQKRGKDNKAVIASNIMYVVGQYPRFLKAHWKFLKTVVNKLFEFMHESHPGVQDMACDTFLKIATKCKRKFVT 623
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig816.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2UZ09_9STRA1.560e-6095.74Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S0AX47_9STRA2.270e-5893.62Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A6A5A5T2_9STRA3.760e-5691.40Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A4W5LUE1_9TELE2.060e-5487.10Uncharacterized protein n=2 Tax=Euteleostomi TaxID... [more]
A0A171A859_TRIIF9.790e-5485.11Exportin-1 (Fragment) n=1 Tax=Triatoma infestans T... [more]
A0A397BVF9_9STRA1.360e-5392.47CRM1_C domain-containing protein (Fragment) n=1 Ta... [more]
F6YA11_MOUSE1.430e-5387.10Exportin-1 (Fragment) n=1 Tax=Mus musculus TaxID=1... [more]
A6QXB1_AJECN1.560e-5388.17Uncharacterized protein n=1 Tax=Ajellomyces capsul... [more]
A0A7S2V9Y0_9STRA4.160e-5391.49Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S1YZM0_TRICV5.760e-5392.55Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig816contigH-akashiwo_Contig816:476168..477436 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog35128.Thaps268616
PFAMsCRM1_C,IBN_N,Xpo1
Model size285
Max annot lvl2836|Bacillariophyta
KEGG koko:K14290
KEGG TC1.I.1
KEGG Pathwayko03008,ko03013,ko04013,ko05164,ko05166,ko05169,map03008,map03013,map04013,map05164,map05166,map05169
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.87e-52
EggNOG OGsCOG5101@1|root,KOG2020@2759|Eukaryota,2XBJY@2836|Bacillariophyta
DescriptionCRM1 C terminal
Cds size285
COG categoryUY
BRITEko00000,ko00001,ko03009,ko03016,ko03019,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387996.6681182-CDS-H-akashiwo_Contig816:476167..4762571681387996.6681182-CDS-H-akashiwo_Contig816:476167..476257Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig816 476168..476257 +
1681387996.6797931-CDS-H-akashiwo_Contig816:476799..4769311681387996.6797931-CDS-H-akashiwo_Contig816:476799..476931Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig816 476800..476931 +
1681387996.6965606-CDS-H-akashiwo_Contig816:477373..4774361681387996.6965606-CDS-H-akashiwo_Contig816:477373..477436Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig816 477374..477436 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig816.10.1prot_H-akashiwo_Contig816.10.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig816 476168..477436 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig816.10.1

>prot_H-akashiwo_Contig816.10.1 ID=prot_H-akashiwo_Contig816.10.1|Name=mRNA_H-akashiwo_Contig816.10.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=95bp
MNEEEEKRFLVTVIKDLLGLCEMKRGKDNKAVIAANIMYVVGQYPRFLRA
HWKFLKTVVNKLFEFMHEKHPGVQDMACDTFLKIAAKCKRKFVTQ
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mRNA from alignment at H-akashiwo_Contig816:476168..477436+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig816.10.1 ID=mRNA_H-akashiwo_Contig816.10.1|Name=mRNA_H-akashiwo_Contig816.10.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1269bp|location=Sequence derived from alignment at H-akashiwo_Contig816:476168..477436+ (Heterosigma akashiwo CCMP452)
ATGAACGAGGAGGAGGAGAAGCGGTTCCTGGTCACGGTCATCAAGGACCT
GCTGGGCCTGTGCGAGATGAAGCGCGGCAAGGACAACAAGGTTCGGGGCG
GGCGGGCGGGCGGGCAGGCGGGGGTACAATACAATTCGTGGTATGTTCGT
CTGGACTGAAAACTTCAAACACAACCGGAGCCCCTTTAGTTGTTATACAT
ACGTGCAGGTGCTGGAGAAACCAGGGGCACATTTTCATTTGTTTGGTATA
GTACCAACAAGAGAAGAAGGGCGGGTGAAAATAAAATTGTATTTCATCGT
TGTATCAGTGTTGTGGCGGTTGTTTATTATATAATACACAAATCTATTTC
CTTTCTCAGGAATCCACATTTATAATGATTTTCGGCGCATCACCAGATTA
GATCTAGAGATGCCATCTTGAATTGGAATCACCTATGGATCACTTCAGCC
TTCCATAAGTATTCGGACATAAAAAAAATGCGTCGATCATTGTAGATAAG
ATTTCTGAGAGAAAACACATTGATGCGTGCACATAATTGTTTTGACTTCC
CTGGATCACAACGCCAAAGCATTCAAATGTTGTTGATGCAATTCTCATTG
GAAAAAAAAAACAAAACAAAAAACCACAACAGGCGGTGATCGCGGCCAAC
ATCATGTACGTGGTCGGGCAGTACCCGCGGTTCCTGCGGGCGCACTGGAA
GTTCCTCAAGACCGTGGTCAACAAGCTCTTCGAGTTCATGCACGAAAAGC
ACCCGGGGGTCCAGGTACACACACCACGGAGAGGCGGGGGGGAAGCCCTG
CAGTACATATTAACCCGCAGCCCCCCCCCGCCCCCCGTTGCCCCCCCCTC
TTCCTTCGCCTCGAGGGAAGCAGCGGGCGACGGTGGGTGGTGTCTCGGGC
CTCGATCCTCGTTGGCGGTTGCCGCTGGCTGCAGCACCCTGTGGCGTGGA
ATCGGTCGCCTGCCTGTCCGGCTGTTGGTGATGATGGCCACCGTCAGTAC
TGAGATGAAGCAGGCTCCCTCGGGTCGGACCTCGCTTGAGATGTTGGGTG
GAGAGATGTGTGATGATTACTATAAGAGATAACACCATTGGCAGGTCCCG
CCGCATACCCACGTTGTCCCCTCTTACACCCCCACACCAACCCACCCACC
CTGTCTAAGGCCTTGCCTTTTGTATACCCCCCTGCTGCTGCCTCTGGTGC
GGTCAGGATATGGCGTGCGACACCTTCCTGAAGATTGCAGCGAAATGCAA
GCGGAAGTTTGTAACCCAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig816:476168..477436+

>mRNA_H-akashiwo_Contig816.10.1 ID=mRNA_H-akashiwo_Contig816.10.1|Name=mRNA_H-akashiwo_Contig816.10.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=285bp|location=Sequence derived from alignment at H-akashiwo_Contig816:476168..477436+ (Heterosigma akashiwo CCMP452)
ATGAACGAGGAGGAGGAGAAGCGGTTCCTGGTCACGGTCATCAAGGACCT
GCTGGGCCTGTGCGAGATGAAGCGCGGCAAGGACAACAAGGCGGTGATCG
CGGCCAACATCATGTACGTGGTCGGGCAGTACCCGCGGTTCCTGCGGGCG
CACTGGAAGTTCCTCAAGACCGTGGTCAACAAGCTCTTCGAGTTCATGCA
CGAAAAGCACCCGGGGGTCCAGGATATGGCGTGCGACACCTTCCTGAAGA
TTGCAGCGAAATGCAAGCGGAAGTTTGTAACCCAA
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