mRNA_H-akashiwo_Contig814.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig814.4.1
Unique NamemRNA_H-akashiwo_Contig814.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig814.4.1 vs. uniprot
Match: A0A7S4D7D7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7D7_HETAK)

HSP 1 Score: 116 bits (290), Expect = 2.270e-31
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 2 
Query:    5 VLLPQRPSEKPFLEMPEMSWRGHCDHGLCAAMLPRLNTALRYFAPHLLHNDDGP 166
            VLLPQRPSEKPFLEMPEMSWRGHCDHGLCAAMLPRL+ ALR+FAPHLLHNDDGP
Sbjct:  127 VLLPQRPSEKPFLEMPEMSWRGHCDHGLCAAMLPRLHAALRHFAPHLLHNDDGP 180
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig814.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4D7D7_HETAK2.270e-3194.44Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig814contigH-akashiwo_Contig814:199531..200037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size180
Hectar predicted targeting categoryother localisation
Exons2
Cds size177
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387996.030338-CDS-H-akashiwo_Contig814:199530..1995901681387996.030338-CDS-H-akashiwo_Contig814:199530..199590Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig814 199531..199590 +
1681387996.0392258-CDS-H-akashiwo_Contig814:199918..2000351681387996.0392258-CDS-H-akashiwo_Contig814:199918..200035Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig814 199919..200035 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig814.4.1prot_H-akashiwo_Contig814.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig814 199531..200035 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig814.4.1

>prot_H-akashiwo_Contig814.4.1 ID=prot_H-akashiwo_Contig814.4.1|Name=mRNA_H-akashiwo_Contig814.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=59bp
SSPATSAPERETIPGNAGDELARPLRPRPLRGDAAPSEHRAPLLCPAPPA
QRRRPRARR
back to top

mRNA from alignment at H-akashiwo_Contig814:199531..200037+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig814.4.1 ID=mRNA_H-akashiwo_Contig814.4.1|Name=mRNA_H-akashiwo_Contig814.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=507bp|location=Sequence derived from alignment at H-akashiwo_Contig814:199531..200037+ (Heterosigma akashiwo CCMP452)
TCAAGTCCTGCTACCTCAGCGCCCGAGCGAGAAACCATTCCTGGAAATGC
CGGAGATGAGGTGAGCGCGTTTTTTGTTCTCCCCCCCCCCCCCTAAGTTT
CCGCCTGTCAAGGGGGTCGTGTTAAAATGAAGCACTTAAGTTTGTGCCCC
AGTCTGCCACTTTTTTTTTGTCATTTGAGTCATGAAAAAAACAACTGTTG
TAGCTAAAATATATCATTCATCCCAGATGTCATGCCAATATTTTATATGG
AAATGTGTATACTATGAATCTTTTGTAAACCTTTCTGCTGTGCACTTTGT
CGTTCCGCCTCCCGGGCCCTTTCCTGGTACCTTCTCCACCTGAGCCTCCA
AAACCGCCCGGCCGCCCACCTTCCCCCTCCGCGCCCAGCTGGCGCGGCCA
CTGCGACCACGGCCTTTGCGCGGCGATGCTGCCCCGTCTGAACACCGCGC
TCCGCTACTTTGCCCCGCACCTCCTGCACAACGACGACGGCCCCGGGCCA
GGCGGCG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig814:199531..200037+

>mRNA_H-akashiwo_Contig814.4.1 ID=mRNA_H-akashiwo_Contig814.4.1|Name=mRNA_H-akashiwo_Contig814.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=177bp|location=Sequence derived from alignment at H-akashiwo_Contig814:199531..200037+ (Heterosigma akashiwo CCMP452)
TCAAGTCCTGCTACCTCAGCGCCCGAGCGAGAAACCATTCCTGGAAATGC
CGGAGATGAGCTGGCGCGGCCACTGCGACCACGGCCTTTGCGCGGCGATG
CTGCCCCGTCTGAACACCGCGCTCCGCTACTTTGCCCCGCACCTCCTGCA
CAACGACGACGGCCCCGGGCCAGGCGG
back to top