mRNA_H-akashiwo_Contig813.10.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig813.10.1
Unique NamemRNA_H-akashiwo_Contig813.10.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig813.10.1 vs. uniprot
Match: A0A7S2UZL4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZL4_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.740e-14
Identity = 29/47 (61.70%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   55 GVLMIEGECDFLREEEMLDAITAGHEAIKTICRALAAWDKVVGKPKQ 195
            G+LMIEG CDFL EE+M++A+  G E +  IC+A+ AW KVVGKPKQ
Sbjct:   32 GILMIEGSCDFLTEEQMVEAVRVGQEGVSAICKAVEAWSKVVGKPKQ 78
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BLAST of mRNA_H-akashiwo_Contig813.10.1 vs. uniprot
Match: A0A7W1RFR5_9BACT (Polyribonucleotide nucleotidyltransferase n=1 Tax=Parachlamydiaceae bacterium TaxID=2052176 RepID=A0A7W1RFR5_9BACT)

HSP 1 Score: 73.6 bits (179), Expect = 1.010e-13
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:   52 NGVLMIEGECDFLREEEMLDAITAGHEAIKTICRALAAWDKVVGKPKQ 195
            + +LMIEG CDFL EE++L+A+T GHEAIK IC A+  W K+VGKPKQ
Sbjct:  183 DAILMIEGFCDFLTEEQVLEALTLGHEAIKKICHAITDWCKLVGKPKQ 230
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BLAST of mRNA_H-akashiwo_Contig813.10.1 vs. uniprot
Match: A0A7W1YV12_9BACT (Polyribonucleotide nucleotidyltransferase n=1 Tax=Parachlamydiaceae bacterium TaxID=2052176 RepID=A0A7W1YV12_9BACT)

HSP 1 Score: 70.5 bits (171), Expect = 1.230e-12
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:   52 NGVLMIEGECDFLREEEMLDAITAGHEAIKTICRALAAWDKVVGKPK 192
            N +LMIEG CDFL E+++L+AI  G  AIKTIC ALA W K VGKPK
Sbjct:  184 NAILMIEGYCDFLTEDQVLEAIQVGQRAIKTICDALAKWGKEVGKPK 230
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BLAST of mRNA_H-akashiwo_Contig813.10.1 vs. uniprot
Match: A0A7X5Q983_9BACT (Polyribonucleotide nucleotidyltransferase n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A7X5Q983_9BACT)

HSP 1 Score: 69.7 bits (169), Expect = 2.300e-12
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:   52 NGVLMIEGECDFLREEEMLDAITAGHEAIKTICRALAAWDKVVGKPK 192
            + VLMIEG CDFL EE+++DAI+ GH  IKTIC AL  W  ++GKPK
Sbjct:  183 DAVLMIEGYCDFLTEEQVIDAISIGHSGIKTICEALQEWQDLLGKPK 229
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BLAST of mRNA_H-akashiwo_Contig813.10.1 vs. uniprot
Match: UPI00083901E5 (polyribonucleotide nucleotidyltransferase n=1 Tax=Parachlamydia sp. C2 TaxID=1414722 RepID=UPI00083901E5)

HSP 1 Score: 69.3 bits (168), Expect = 3.140e-12
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:   52 NGVLMIEGECDFLREEEMLDAITAGHEAIKTICRALAAWDKVVGKPK 192
            + VLMIEG CDFL EE++L+AI  GH+AIK IC AL+ W   VGKPK
Sbjct:  183 DAVLMIEGSCDFLTEEQVLEAIEQGHQAIKGICHALSQWQAKVGKPK 229
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BLAST of mRNA_H-akashiwo_Contig813.10.1 vs. uniprot
Match: A0A6M1ZW29_9BACT (Polyribonucleotide nucleotidyltransferase n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A6M1ZW29_9BACT)

HSP 1 Score: 68.9 bits (167), Expect = 4.300e-12
Identity = 27/47 (57.45%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   52 NGVLMIEGECDFLREEEMLDAITAGHEAIKTICRALAAWDKVVGKPK 192
            + +LMIEG CDFL EE++L+AI  GH++I+ IC+ +A W K VGKPK
Sbjct:  184 DAILMIEGYCDFLTEEQVLEAIETGHQSIRAICKGIAEWQKEVGKPK 230
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BLAST of mRNA_H-akashiwo_Contig813.10.1 vs. uniprot
Match: A0A835ZC49_9STRA (Polyribonucleotide nucleotidyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC49_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 4.300e-12
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   55 GVLMIEGECDFLREEEMLDAITAGHEAIKTICRALAAWDKVVGKPKQ 195
            GVLMIEG CDFL EE+M+ AI AGH A++ IC  L AW   VG+PKQ
Sbjct:  147 GVLMIEGACDFLTEEQMVSAIEAGHAAVREICLGLEAWAAEVGRPKQ 193
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BLAST of mRNA_H-akashiwo_Contig813.10.1 vs. uniprot
Match: F8KYC8_PARAV (Polyribonucleotide nucleotidyltransferase n=4 Tax=Parachlamydia TaxID=83551 RepID=F8KYC8_PARAV)

HSP 1 Score: 68.6 bits (166), Expect = 5.870e-12
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   52 NGVLMIEGECDFLREEEMLDAITAGHEAIKTICRALAAWDKVVGKPK 192
            + VLMIEG CDFL EE++L+AI  GH+ IK IC  L AW K +GKPK
Sbjct:  185 DAVLMIEGYCDFLTEEQILEAIEIGHQGIKAICETLLAWQKELGKPK 231
[Close]
BLAST of mRNA_H-akashiwo_Contig813.10.1 vs. uniprot
Match: UPI001BCEE9E9 (polyribonucleotide nucleotidyltransferase n=1 Tax=Chlamydiifrater phoenicopteri TaxID=2681469 RepID=UPI001BCEE9E9)

HSP 1 Score: 68.6 bits (166), Expect = 5.870e-12
Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:   52 NGVLMIEGECDFLREEEMLDAITAGHEAIKTICRALAAWDKVVGKPKQ 195
            N +LMIEG C FL EE++LDAI  GHE++  ICR L++W K VGK K+
Sbjct:  183 NAILMIEGHCRFLDEEQVLDAIAFGHESLSVICRQLSSWQKAVGKAKE 230
[Close]
BLAST of mRNA_H-akashiwo_Contig813.10.1 vs. uniprot
Match: A0A1M3CSE9_9CHLA (Polyribonucleotide nucleotidyltransferase n=1 Tax=Chlamydiales bacterium 38-26 TaxID=1895743 RepID=A0A1M3CSE9_9CHLA)

HSP 1 Score: 68.2 bits (165), Expect = 8.020e-12
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   52 NGVLMIEGECDFLREEEMLDAITAGHEAIKTICRALAAWDKVVGKPK 192
            + VLMIEG CDFL EE++++AI  GHE IKTIC AL  W K +GK K
Sbjct:  183 DAVLMIEGHCDFLTEEQVIEAIEFGHEGIKTICHALLNWQKEIGKTK 229
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig813.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2UZL4_9STRA2.740e-1461.70Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7W1RFR5_9BACT1.010e-1364.58Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A7W1YV12_9BACT1.230e-1265.96Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A7X5Q983_9BACT2.300e-1261.70Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
UPI00083901E53.140e-1263.83polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A6M1ZW29_9BACT4.300e-1257.45Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A835ZC49_9STRA4.300e-1263.83Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
F8KYC8_PARAV5.870e-1261.70Polyribonucleotide nucleotidyltransferase n=4 Tax=... [more]
UPI001BCEE9E95.870e-1258.33polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A1M3CSE9_9CHLA8.020e-1261.70Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig813contigH-akashiwo_Contig813:500306..501122 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog765952.PUV_09130
Preferred namepnp
PFAMsKH_1,PNPase,RNase_PH,RNase_PH_C,S1
Model size197
Max annot lvl204428|Chlamydiae
KEGG rclassRC02795
KEGG koko:K00962
KEGG ReactionR00437,R00438,R00439,R00440
KEGG Pathwayko00230,ko00240,ko03018,map00230,map00240,map03018
KEGG ModuleM00394
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Evalue5.72e-11
EggNOG OGsCOG1185@1|root,COG1185@2|Bacteria,2JFFK@204428|Chlamydiae
EC2.7.7.8
DescriptionInvolved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction
Cds size132
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387995.910653-CDS-H-akashiwo_Contig813:500305..5003471681387995.910653-CDS-H-akashiwo_Contig813:500305..500347Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig813 500306..500347 -
1681387995.9221067-CDS-H-akashiwo_Contig813:500581..5006711681387995.9221067-CDS-H-akashiwo_Contig813:500581..500671Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig813 500582..500671 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387995.9313066-UTR-H-akashiwo_Contig813:500671..5006821681387995.9313066-UTR-H-akashiwo_Contig813:500671..500682Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig813 500672..500682 -
1681387995.9404159-UTR-H-akashiwo_Contig813:501070..5011221681387995.9404159-UTR-H-akashiwo_Contig813:501070..501122Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig813 501071..501122 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig813.10.1prot_H-akashiwo_Contig813.10.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig813 500306..500671 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig813.10.1

>prot_H-akashiwo_Contig813.10.1 ID=prot_H-akashiwo_Contig813.10.1|Name=mRNA_H-akashiwo_Contig813.10.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=44bp
MIEGECDFLREEEMLDAITAGHEAIKTICRALAAWDKVVGKPKQ
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mRNA from alignment at H-akashiwo_Contig813:500306..501122-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig813.10.1 ID=mRNA_H-akashiwo_Contig813.10.1|Name=mRNA_H-akashiwo_Contig813.10.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=817bp|location=Sequence derived from alignment at H-akashiwo_Contig813:500306..501122- (Heterosigma akashiwo CCMP452)
GGCCCAGATGGCCGCCAGCCGGCTCGACCTGCTGCTCGCGGGCACCGATA
GAGTGGGGCGCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCCTTGCCC
GCCTGCTGCCGCCCCTACCGCCCCGCCCGCTCCTCCCTTTCCTCCTCCCT
TCCCCCGCGCCCTCCCTGGCGCCCGCCCGAAACCCGCCCGCCGCCGCCGC
CGCCGCCGCCCGGGAAAAGAAGCCGCCCGCCGGTCTGTAGTTAATGTGCA
TAGGGTTGCCTTCCTCTTCTCATAGGAGACCATTGTGTACACACGTGGGC
GGTAAGAGCCATAAAATGGGCACAGGTAGCATCAATTCGCACTCATTTGC
ACTCGGCAATTTGTGTCGCTTATAAATCTTATGAAACCCATAGGAAGAAC
AATTCTAAAAAAAGTTCCTCGCCCATGCCCCCCCCCAGAGACGGCGTGCT
GATGATTGAGGGCGAGTGCGACTTCCTCCGCGAGGAGGAGATGCTGGACG
CAATCACGGCCGGCCACGAGGCCATCAAGACCATCTGCCGGGTATACATG
ACGAGCGAGCGGCGGCGGCGGCGGCGGCGGAGAAGAGGGGGGGTGTACTG
TTCTTCCCTGCCCTGTTCCTTGCTCAGGTGGCGGTCCTGTGGATACAGTG
AGCACGGGACTACACTCCGCTTGTTCATATTTGTGACTGTTCTTCTGACT
TTCACTGGTTTGTGTTCGTGTGTGTATGTTTTATGTTTTTTTTTTTTAAC
ACGCACACTTTTTTTTTTTGCACAGGCTCTAGCAGCCTGGGATAAAGTGG
TGGGCAAACCCAAGCAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig813:500306..501122-

>mRNA_H-akashiwo_Contig813.10.1 ID=mRNA_H-akashiwo_Contig813.10.1|Name=mRNA_H-akashiwo_Contig813.10.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=132bp|location=Sequence derived from alignment at H-akashiwo_Contig813:500306..501122- (Heterosigma akashiwo CCMP452)
ATGATTGAGGGCGAGTGCGACTTCCTCCGCGAGGAGGAGATGCTGGACGC
AATCACGGCCGGCCACGAGGCCATCAAGACCATCTGCCGGGCTCTAGCAG
CCTGGGATAAAGTGGTGGGCAAACCCAAGCAG
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