mRNA_H-akashiwo_Contig811.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig811.6.1
Unique NamemRNA_H-akashiwo_Contig811.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig811.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig811contigH-akashiwo_Contig811:246679..247871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size205
Hectar predicted targeting categoryother localisation
Exons3
Cds size204
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387994.7220423-CDS-H-akashiwo_Contig811:246678..2467221681387994.7220423-CDS-H-akashiwo_Contig811:246678..246722Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig811 246679..246722 -
1681387994.7322567-CDS-H-akashiwo_Contig811:247438..2475191681387994.7322567-CDS-H-akashiwo_Contig811:247438..247519Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig811 247439..247519 -
1681387994.741804-CDS-H-akashiwo_Contig811:247792..2478711681387994.741804-CDS-H-akashiwo_Contig811:247792..247871Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig811 247793..247871 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig811.6.1prot_H-akashiwo_Contig811.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig811 246679..247871 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig811.6.1

>prot_H-akashiwo_Contig811.6.1 ID=prot_H-akashiwo_Contig811.6.1|Name=mRNA_H-akashiwo_Contig811.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=68bp
ESDERPEHAPVHRGPERLRRDRLRAQGPRRGPGRPDERRHDPAVHRLPER
PPGGGADADGAGLRAGPG
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mRNA from alignment at H-akashiwo_Contig811:246679..247871-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig811.6.1 ID=mRNA_H-akashiwo_Contig811.6.1|Name=mRNA_H-akashiwo_Contig811.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1193bp|location=Sequence derived from alignment at H-akashiwo_Contig811:246679..247871- (Heterosigma akashiwo CCMP452)
GAAAGCGATGAACGACCTGAGCACGCCCCTGTACATCGCGGCCCAGAACG
GCTACGCCGAGATCGTCTCCGTGCTCAAGGTGAGCACGCCCCTGTACATC
CGGCATTTGGCTCTTCCCGCGGGGAGCACGGAGGGGCGAGGGGCCGGGGG
CGGCGGCGGTCCCACACCGCAAAAGCGAGCGAGCGAGCGAGGGCGCGGTC
CTCCCTTTGATGCGAACCGGCAGCCCCCTGTCCCTTCTTCGATATGATTG
GTGATAGTAAATTTTCAAAGACCCTTCTTCGATATGATTGGTGATAGTAA
ATTTTCAAAGACTTTTGGTTGGTCAAGTGCTTTTTGCTCTGGGAGGGGGC
AGGCCCACGGCGCGGACCCGGACGCCCAGATGAACGACGGCACGACCCCG
CTGTACATCGCCTGCCAGAACGGCCGCCTGGAGGTGGGGCGCCCGCCGCC
GCTGGGGGCCTCCCCCCCGCCTCCCCGCCCCCTCTTCTTCTTCGGCACGC
CCCGCGCCTCCGCCCCGCGCGCCCTCGTGCGTGGGTACCCGCAGCCAAGG
GGGGGAAGGGGCGAAGGAACATGCATACATTTATATACATGGCAACATCA
ACAATCTGCCTTCGCCCCTTCCCCCCCTAGCCAAAGCAACCTCCCCTCCC
TCCCCCCCCTTCCCTCAAACCTCATTTTGCACCCCCCCTCACTTTTTAAA
AAGCTGTGCTCATCAAGTTTCAATGTGACTTAAACTACCCCTGCAAGGAC
ATAATGAAATCATCCCCCTCCCCCTCTGGGTTTGCTTGCTGTTGAGATGG
ACAGGCTGAAGGAAGAAAGCGTCTTGAAGAAGAAAAGTCCGGAGGGCTGG
AAGTAAGGCAGCGCCATCAATCGCTGGAACATCGCCCGCCCAGCAGCAGT
CTAAGACTGCACGAGTAGCCAAGGTCACTCCCGCACCGAGGAACCGCGCC
GAGGAGAGGTTGCCAGACTTCGGCTCCCTGGACACCCCGAGAGCAAAGCG
TGCCGCCGTTCGGTGGGGGCCGGCCTTGCGCACGAAAGAATGTATATAAC
CCCCCCTGTTGCCCGCCCCACCGGTCGCCGCCGCCGCCGCCCCCTCCCCC
TCTTCCCCTTTCACGATCTTGGTGAAAAAAAAAATAATAACACGGGCAGG
TGGTGCAGACGCTGATGGCGCAGGGCTGCGCGCTGGACCTGGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig811:246679..247871-

>mRNA_H-akashiwo_Contig811.6.1 ID=mRNA_H-akashiwo_Contig811.6.1|Name=mRNA_H-akashiwo_Contig811.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=204bp|location=Sequence derived from alignment at H-akashiwo_Contig811:246679..247871- (Heterosigma akashiwo CCMP452)
GAAAGCGATGAACGACCTGAGCACGCCCCTGTACATCGCGGCCCAGAACG
GCTACGCCGAGATCGTCTCCGTGCTCAAGGCCCACGGCGCGGACCCGGAC
GCCCAGATGAACGACGGCACGACCCCGCTGTACATCGCCTGCCAGAACGG
CCGCCTGGAGGTGGTGCAGACGCTGATGGCGCAGGGCTGCGCGCTGGACC
TGGC
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