mRNA_H-akashiwo_Contig810.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig810.4.1
Unique NamemRNA_H-akashiwo_Contig810.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig810.4.1 vs. uniprot
Match: A0A7S3XUF9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUF9_HETAK)

HSP 1 Score: 239 bits (610), Expect = 2.340e-76
Identity = 138/149 (92.62%), Postives = 138/149 (92.62%), Query Frame = 2
Query:    2 KGLEVPEDRPSASSQADEQPPTPAAADSGRRRVNYLMFNAWLAPIDVDKVSKRVSRFLRAVGSVAAVGXXXXXXXXXXAEPGAKEQKQQQGLRALFRQFDADGSGDVDLLELKRMINGLGLPITDPEARALVLHYDRDGDGRMDFEEFA 448
            KGLEVPEDRPSASSQADEQPPTPAAADSGRRRVNYLMFNAWLAPIDVDKVSKRVSRFLRAVGSVAAVGXXXXXXXXXXAEPGAKEQKQQQGLRALFRQFDADGSGDVDLLELKRMINGLGLPITDPEARALVL           FEEFA
Sbjct:  171 KGLEVPEDRPSASSQADEQPPTPAAADSGRRRVNYLMFNAWLAPIDVDKVSKRVSRFLRAVGSVAAVGXXXXXXXXXXAEPGAKEQKQQQGLRALFRQFDADGSGDVDLLELKRMINGLGLPITDPEARALVLXXXXXXXXXXXFEEFA 319          
BLAST of mRNA_H-akashiwo_Contig810.4.1 vs. uniprot
Match: A0A6A5AH39_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AH39_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 4.300e-8
Identity = 28/67 (41.79%), Postives = 43/67 (64.18%), Query Frame = 2
Query:  248 AKEQKQQQGLRALFRQFDADGSGDVDLLELKRMINGLGLPITDPEARALVLHYDRDGDGRMDFEEFA 448
            AK+      L+A+F   D DGSG V  +EL   ++G+GLP+T  + + LV  YD +GDG++ ++EFA
Sbjct:  301 AKKDGHMLSLKAIFEDIDDDGSGHVTRMELGDALSGMGLPLTSGQIKCLVDEYDLNGDGKIQYDEFA 367          
BLAST of mRNA_H-akashiwo_Contig810.4.1 vs. uniprot
Match: A0A3L6UVJ3_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6UVJ3_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 4.570e-8
Identity = 28/67 (41.79%), Postives = 43/67 (64.18%), Query Frame = 2
Query:  248 AKEQKQQQGLRALFRQFDADGSGDVDLLELKRMINGLGLPITDPEARALVLHYDRDGDGRMDFEEFA 448
            AK+      L+A+F   D DGSG V  +EL   ++G+GLP+T  + + LV  YD +GDG++ ++EFA
Sbjct:  897 AKKDGHMLSLKAIFEDIDDDGSGHVTRMELGDALSGMGLPLTSGQIKCLVDEYDLNGDGKIQYDEFA 963          
BLAST of mRNA_H-akashiwo_Contig810.4.1 vs. uniprot
Match: W4FZG5_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FZG5_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 4.720e-8
Identity = 28/67 (41.79%), Postives = 43/67 (64.18%), Query Frame = 2
Query:  248 AKEQKQQQGLRALFRQFDADGSGDVDLLELKRMINGLGLPITDPEARALVLHYDRDGDGRMDFEEFA 448
            AK+      L+A+F   D DGSG V  +EL   ++G+GLP+T  + + LV  YD +GDG++ ++EFA
Sbjct:  899 AKKDGHMLSLKAIFEDIDDDGSGHVTRMELGDALSGMGLPLTSGQIKCLVDEYDLNGDGKIQYDEFA 965          
BLAST of mRNA_H-akashiwo_Contig810.4.1 vs. uniprot
Match: A0A820HCF1_9BILA (Hypothetical protein n=1 Tax=Rotaria socialis TaxID=392032 RepID=A0A820HCF1_9BILA)

HSP 1 Score: 58.5 bits (140), Expect = 5.310e-8
Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = 2
Query:  275 LRALFRQFDADGSGDVDLLELKRMINGLGLPITDPEARALVLHYDRDGDGRMDFEEFA 448
            LR  F  FDADGS D+ L ELK+ +  LG+ ++D EAR +    D D +GR++FEEFA
Sbjct:   18 LRQAFDLFDADGSDDLSLPELKKALAALGVTVSDHEARQMFAAIDLDKNGRIEFEEFA 75          
BLAST of mRNA_H-akashiwo_Contig810.4.1 vs. uniprot
Match: A0A1V9YYR8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YYR8_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 6.350e-8
Identity = 39/125 (31.20%), Postives = 60/125 (48.00%), Query Frame = 2
Query:   80 DSGRRRVNYLMFNAWLAPIDVDKVSKRVSRFLRAVGSVAAVGXXXXXXXXXXAEPGAKEQKQQQGL--RALFRQFDADGSGDVDLLELKRMINGLGLPITDPEARALVLHYDRDGDGRMDFEEFA 448
            D G   V+Y  F+ WL P    K+ +   R  + V                       + K+Q+GL  + +F+  DAD SG V  LE K  +  +GLP+T+ + + LV   D DGDG++++ EFA
Sbjct:  205 DRGTSGVDYTQFSRWLQPSFHFKLKQLRQRIQQLVS----------------------QAKKQRGLDCKDIFKAMDADSSGFVTRLEFKEGLFDMGLPLTEAQMKCLVDSIDADGDGKVNYREFA 307          
BLAST of mRNA_H-akashiwo_Contig810.4.1 vs. uniprot
Match: A0A397FGW3_9STRA (Uncharacterized protein (Fragment) n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FGW3_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 8.090e-8
Identity = 28/67 (41.79%), Postives = 42/67 (62.69%), Query Frame = 2
Query:  248 AKEQKQQQGLRALFRQFDADGSGDVDLLELKRMINGLGLPITDPEARALVLHYDRDGDGRMDFEEFA 448
            AK+      L+A+F   D DGSG V  +EL   ++G+GLP+T  + + LV  YD +GDG++ + EFA
Sbjct:  392 AKKDGHMLSLKAIFEDIDDDGSGHVTRMELGDALSGMGLPLTSGQIKCLVDEYDLNGDGKIQYNEFA 458          
BLAST of mRNA_H-akashiwo_Contig810.4.1 vs. uniprot
Match: A0A815AAZ0_9BILA (Hypothetical protein n=5 Tax=Rotaria TaxID=231623 RepID=A0A815AAZ0_9BILA)

HSP 1 Score: 58.2 bits (139), Expect = 8.450e-8
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = 2
Query:  275 LRALFRQFDADGSGDVDLLELKRMINGLGLPITDPEARALVLHYDRDGDGRMDFEEFA 448
            LR  F  FDADGSGD+ L+ELK+ +  LG+ ++D EAR +    D D +G ++F EFA
Sbjct:   18 LRQAFDLFDADGSGDLSLIELKKALVALGVTVSDREARQMFAAIDLDKNGLIEFHEFA 75          
BLAST of mRNA_H-akashiwo_Contig810.4.1 vs. uniprot
Match: A0A396ZYL4_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A396ZYL4_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 8.590e-8
Identity = 28/67 (41.79%), Postives = 42/67 (62.69%), Query Frame = 2
Query:  248 AKEQKQQQGLRALFRQFDADGSGDVDLLELKRMINGLGLPITDPEARALVLHYDRDGDGRMDFEEFA 448
            AK+      L+A+F   D DGSG V  +EL   ++G+GLP+T  + + LV  YD +GDG++ + EFA
Sbjct:  895 AKKDGHMLSLKAIFEDIDDDGSGHVTRMELGDALSGMGLPLTSGQIKCLVDEYDLNGDGKIQYNEFA 961          
BLAST of mRNA_H-akashiwo_Contig810.4.1 vs. uniprot
Match: A0A059CK02_EUCGR (Uncharacterized protein (Fragment) n=2 Tax=Eucalyptus grandis TaxID=71139 RepID=A0A059CK02_EUCGR)

HSP 1 Score: 57.8 bits (138), Expect = 9.280e-8
Identity = 29/60 (48.33%), Postives = 37/60 (61.67%), Query Frame = 2
Query:  275 LRALFRQFDADGSGDVDLLELKRMINGLG---LPITDPEARALVLHYDRDGDGRMDFEEF 445
            LR +F   DADG G +   EL R+++GLG       D EAR +V   DRDGDGR+D +EF
Sbjct:    7 LRQVFELIDADGDGKISPTELSRVLSGLGHVGAAAADEEARVMVKEIDRDGDGRVDLDEF 66          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig810.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XUF9_HETAK2.340e-7692.62Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6A5AH39_9STRA4.300e-841.79Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A3L6UVJ3_9STRA4.570e-841.79Uncharacterized protein n=6 Tax=Aphanomyces astaci... [more]
W4FZG5_9STRA4.720e-841.79Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A820HCF1_9BILA5.310e-850.00Hypothetical protein n=1 Tax=Rotaria socialis TaxI... [more]
A0A1V9YYR8_9STRA6.350e-831.20Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A397FGW3_9STRA8.090e-841.79Uncharacterized protein (Fragment) n=3 Tax=Aphanom... [more]
A0A815AAZ0_9BILA8.450e-848.28Hypothetical protein n=5 Tax=Rotaria TaxID=231623 ... [more]
A0A396ZYL4_9STRA8.590e-841.79Uncharacterized protein n=5 Tax=Aphanomyces astaci... [more]
A0A059CK02_EUCGR9.280e-848.33Uncharacterized protein (Fragment) n=2 Tax=Eucalyp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig810contigH-akashiwo_Contig810:171744..174092 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size453
Hectar predicted targeting categoryother localisation
Exons2
Cds size450
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387994.407976-CDS-H-akashiwo_Contig810:171743..1720151681387994.407976-CDS-H-akashiwo_Contig810:171743..172015Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig810 171744..172015 +
1681387994.4176877-CDS-H-akashiwo_Contig810:173912..1740901681387994.4176877-CDS-H-akashiwo_Contig810:173912..174090Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig810 173913..174090 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig810.4.1prot_H-akashiwo_Contig810.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig810 171744..174090 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig810.4.1

>prot_H-akashiwo_Contig810.4.1 ID=prot_H-akashiwo_Contig810.4.1|Name=mRNA_H-akashiwo_Contig810.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=150bp
KRPGGAGGPPLGFVPGRRAAADPGRGGLRAAAGELPDVQRLAGPNRRGQG
VQAGVALPPGRGQRGGGGRRGGGGGRERGRARGERAEAAARPEGALPPVR
RGRVRRRGPAGAEAHDQRAGPAHHRPGGPRAGAALRPGRRRAHGLRGVRR
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mRNA from alignment at H-akashiwo_Contig810:171744..174092+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig810.4.1 ID=mRNA_H-akashiwo_Contig810.4.1|Name=mRNA_H-akashiwo_Contig810.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2349bp|location=Sequence derived from alignment at H-akashiwo_Contig810:171744..174092+ (Heterosigma akashiwo CCMP452)
AAAAGGCCTGGAGGTGCCGGAGGACCGCCCCTCGGCTTCGTCCCAGGCCG ACGAGCAGCCGCCGACCCCGGCCGCGGCGGACTCCGGGCGGCGGCGGGTG AACTACCTGATGTTCAACGCCTGGCTGGCCCCAATCGACGTGGACAAGGT GTCCAAGCGGGTGTCGCGCTTCCTCCGGGCCGTGGGCAGCGTGGCGGCGG TGGGCGGCGAGGAGGAGGAGGAGGAAGAGAGCGGGGCCGAGCCCGGGGCG AAAGAGCAGAAGCAGCAGCAAGGTGGGACCATTTTACCATACACACTTAA AATTTCCAGGAGGCATTTAATCTTTGCAAGTTGTCCTTGCTGCACATATA TATGTACACTTTCATCTTTCTCCTTAAAAACGGAGAAGAAGAAGATTGAG CAGACAACCGGGACAACTGGGTACAAAGAACAAGCAGCAGTGGGAAAGGA CTGGCTATGTCGGGACAGCCCAAGCGTTGCAAAAATAAATCTTCTTTACA TAGAGACAGCCTAAAAGTTCCACTACTTTCGCAGACTGATGACAAGGCAG AACCATTAACAAACAGATTTCCAACCACTTTGATCAAGGAGTGGCTGCTG GAGTTTGAGCTCCAAAAGTCCCAGGGGCTGATAATCTCCAACACCAAGAA GAGTAAGAACACGGAGAACAGAGTATGTAGGACTTCGCGCAGGTGGAGCT CCCGCTTGTCACTAGCGAAACGCTGTCCGTCAAAGTACTCAGAAGCCAAG GCACGTGCAAGAAGACAATGGTTGTGGCCCAGGAAGTGAGAGGAGCACAT TGCATGGGACAAACGTACACACACAAAAAAAAAAAAAGCTTCTACCTATA ATGGAATGCTCGGCCTAGGCAAAGCTTATAGTACCAGCCTGCGGAGCCAA GTACAGGAGGGGTGCACCTGCCTCCACAGTGCACAGTGCCTTCTTCAGCC TCCTTTCGTCTTCCCTGGAGGGGGCAGGGCATGGGAAGAATAGCAGTCAA GGAGGAAAAAGATGGAAGTTCTTGGTTTGACTATAGATCCCAGGGGGAAC TGGTCTCAACACATACAAGCAATATAGCCTCAGGTGCCCGCAAGCGCTTG AGAGCAGCAATCAGAAGGATGGGCCACATGCTTGATTACAAGAACATCAT AAGGGCCTACAAAACTTTTGTGCGCTCAAAGAATGAATATGGTACTACTC TATAGCCTGGCCTACTGGGGAGCTGCAGAAAGCCATGTGAAGAAGCTCTA TAGAATTCAAGAGAGTGCTGTGGCCCTACTCTTCAACCCTGGCCTTTCTC TACTGTCCCCTTTACTGCAAAGAAGTATAGAAGAGAACAAGTTGCCATTG GGTTCACCTGCAAACTGCTGGACCGGCGGGGGCGTGGTATGGCTCGCACC TTGACACCAGAGTTTGATGACCCCTCTGCCCCAAAACCCCGGAGTTCAGC TCGGCTGTCTGCAGCACGCTCACAGCACCTTCATCAACTGAGACCATTTC ATCTTCCGCCCAACTCCCTGGAAACTTTCAAAAGACGCTATCGAGCTAGA ATCCCAGGTATATGGAACGATCTAAAGTACCCCGCTCTCCAACAGCAGCA CGTAGAAGGATACCTTTCTCTTAGAAGACAACTATGTACACACATGGACG ATAATGGGTAGAGGTAGCAACAGTTACAACAAGCATTTTTTTTTTCACTT AAATGATAAAAAAAAAAACACACACACACACACACACACACAGACAACAA AAGAACCATGAATGGACAAGGTAGATTTTAGATATGGCCGATGTTTTTGC ATAATTGTATTAGAGTTGGCTTTTTGTGTAGAGATACTCTAGGCCAATGG ATCATCCCCCCCCCCAGAAGAATGACATTGTGATTTTCTGTGGTACTTCA GCGCTTATAGTTTAGTTCTACTAAGAGGCGCCCAGGGTTCACCCCTTGAA TGTGAATGGTGGTGCGCAGTTGAGGATTGAACCTACTATAGATAGGCCCC GTGTAGAAGCCATAGCTCAAGAAATGGACAGACCTAATGGCCCACCAATG TCCCCGTTGCAGAAACTCGTTGTTCATCATTATTCTACTGGGCGCAGCAA GGGTCTTGAAAGCACATCTGCGGCTTTGTTCCTTCGTTCCCTCCCACAAA ACCCCCTTCCCCCCCGCAGGCCTGAGGGCGCTCTTCCGCCAGTTCGACGC GGACGGGTCCGGCGACGTGGACCTGCTGGAGCTGAAGCGCATGATCAACG GGCTGGGCCTGCCCATCACCGACCCGGAGGCCCGCGCGCTGGTGCTGCAC TACGACCGGGACGGCGACGGGCGCATGGACTTCGAGGAGTTCGCCGAGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig810:171744..174092+

>mRNA_H-akashiwo_Contig810.4.1 ID=mRNA_H-akashiwo_Contig810.4.1|Name=mRNA_H-akashiwo_Contig810.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=450bp|location=Sequence derived from alignment at H-akashiwo_Contig810:171744..174092+ (Heterosigma akashiwo CCMP452)
AAAAGGCCTGGAGGTGCCGGAGGACCGCCCCTCGGCTTCGTCCCAGGCCG
ACGAGCAGCCGCCGACCCCGGCCGCGGCGGACTCCGGGCGGCGGCGGGTG
AACTACCTGATGTTCAACGCCTGGCTGGCCCCAATCGACGTGGACAAGGT
GTCCAAGCGGGTGTCGCGCTTCCTCCGGGCCGTGGGCAGCGTGGCGGCGG
TGGGCGGCGAGGAGGAGGAGGAGGAAGAGAGCGGGGCCGAGCCCGGGGCG
AAAGAGCAGAAGCAGCAGCAAGGCCTGAGGGCGCTCTTCCGCCAGTTCGA
CGCGGACGGGTCCGGCGACGTGGACCTGCTGGAGCTGAAGCGCATGATCA
ACGGGCTGGGCCTGCCCATCACCGACCCGGAGGCCCGCGCGCTGGTGCTG
CACTACGACCGGGACGGCGACGGGCGCATGGACTTCGAGGAGTTCGCCGA
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