mRNA_H-akashiwo_Contig810.13.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig810.13.1
Unique NamemRNA_H-akashiwo_Contig810.13.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig810.13.1 vs. uniprot
Match: A0A7S3XMH0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMH0_HETAK)

HSP 1 Score: 278 bits (711), Expect = 2.610e-94
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1 
Query:   46 AFKSPILLLCLFLMTSPLAHVGASVGTTPYRKYMDVVLGGAQAVAEEIYSYDEECLEEGFACEKNEECCTGFCSKIQGDSTNKECIVRDDGGDDGESTVEPESSLPECEGVVVPGAYVGPCTHTSSKKIMFMNSKGQ 456
            AFKSPILLLCLFLMTSPLAHVGASVGTTPYRKYMDVVLGGAQAVAEEIYSYDEECLEEGFACEKNEECCTGFCSKIQGDSTNKECIVRDDGGDDGESTVEPESSLPECEGVVVPGAYVGPCTHTSSKKIMFMNSKGQ
Sbjct:    1 AFKSPILLLCLFLMTSPLAHVGASVGTTPYRKYMDVVLGGAQAVAEEIYSYDEECLEEGFACEKNEECCTGFCSKIQGDSTNKECIVRDDGGDDGESTVEPESSLPECEGVVVPGAYVGPCTHTSSKKIMFMNSKGQ 137
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BLAST of mRNA_H-akashiwo_Contig810.13.1 vs. uniprot
Match: A0A7S3XMW9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMW9_HETAK)

HSP 1 Score: 262 bits (669), Expect = 5.390e-87
Identity = 135/150 (90.00%), Postives = 136/150 (90.67%), Query Frame = 1 
Query:   46 AFKSPILLLCLFLMTSPLAHVGASVGTTPYRKYMDVVLGGAQAVAEEIYSYDEECLEEGFACEKNEECCTGFCSKIQGDSTNKECIVRDDGGDDGE---STVEP----------ESSLPECEGVVVPGAYVGPCTHTSSKKIMFMNSKGQ 456
            AFKSPILLLCLFLMTSPLAHVGASVGTTPYRKYMDVVLGGAQAVAEEIYSYDEECLEEGFACEKNEECCTGFCSKIQGDSTNKECIVRDDGGDDGE   STVEP          ESSLP+CEG VVPGAYVGPCTHTSSKKIMFMNSKGQ
Sbjct:    1 AFKSPILLLCLFLMTSPLAHVGASVGTTPYRKYMDVVLGGAQAVAEEIYSYDEECLEEGFACEKNEECCTGFCSKIQGDSTNKECIVRDDGGDDGEGPMSTVEPDFAEGTEPAAESSLPDCEGAVVPGAYVGPCTHTSSKKIMFMNSKGQ 150
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig810.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3XMH0_HETAK2.610e-94100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3XMW9_HETAK5.390e-8790.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig810contigH-akashiwo_Contig810:369277..369896 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size458
Hectar predicted targeting categorysignal peptide
Exons2
Cds size456
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387994.4414701-CDS-H-akashiwo_Contig810:369276..3693441681387994.4414701-CDS-H-akashiwo_Contig810:369276..369344Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig810 369277..369344 -
1681387994.4505317-CDS-H-akashiwo_Contig810:369508..3698961681387994.4505317-CDS-H-akashiwo_Contig810:369508..369896Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig810 369509..369896 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig810.13.1prot_H-akashiwo_Contig810.13.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig810 369277..369896 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig810.13.1

>prot_H-akashiwo_Contig810.13.1 ID=prot_H-akashiwo_Contig810.13.1|Name=mRNA_H-akashiwo_Contig810.13.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=152bp
FPQAPELVRIHKKTMAFKSPILLLCLFLMTSPLAHVGASVGTTPYRKYMD
VVLGGAQAVAEEIYSYDEECLEEGFACEKNEECCTGFCSKIQGDSTNKEC
IVRDDGGDDGESTVEPESSLPECEGVVVPGAYVGPCTHTSSKKIMFMNSK
GQ
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mRNA from alignment at H-akashiwo_Contig810:369277..369896-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig810.13.1 ID=mRNA_H-akashiwo_Contig810.13.1|Name=mRNA_H-akashiwo_Contig810.13.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=620bp|location=Sequence derived from alignment at H-akashiwo_Contig810:369277..369896- (Heterosigma akashiwo CCMP452)
TTCCCACAAGCTCCGGAGCTTGTGAGAATACATAAAAAAACCATGGCTTT
TAAATCTCCAATCCTGCTTCTTTGCCTCTTCCTGATGACTTCTCCTCTTG
CGCACGTTGGCGCTTCCGTCGGAACAACTCCTTACAGAAAGTACATGGAT
GTTGTTCTGGGCGGTGCCCAAGCCGTTGCTGAGGAGATTTACAGCTATGA
TGAAGAGTGCCTGGAGGAGGGCTTTGCCTGCGAGAAGAATGAGGAGTGCT
GCACTGGCTTCTGCTCCAAGATCCAGGGTGACTCTACCAACAAGGAGTGC
ATTGTGCGCGATGATGGGGGAGACGATGGCGAGTCCACTGTGGAGCCCGA
GTCGTCTCTTCCTGAATGTGAGGGCGTTGTCGTTCCAGGTGTGTTTTATG
AGTTGTTATTATCATTACAGTGTTAGTCCGATATCAGATGATTTTTTGTG
TGCTTGTTACTCGTCCTGTAAATTTACTGCTGTGACGTAACAAACACAAC
ATGACATACCATAAAACTTCCATTTCTGTGTATTTCTCTTGTTTTTTTGC
AGGAGCTTACGTAGGACCCTGCACACACACATCTTCCAAGAAGATCATGT
TCATGAACAGCAAGGGCCAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig810:369277..369896-

>mRNA_H-akashiwo_Contig810.13.1 ID=mRNA_H-akashiwo_Contig810.13.1|Name=mRNA_H-akashiwo_Contig810.13.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=456bp|location=Sequence derived from alignment at H-akashiwo_Contig810:369277..369896- (Heterosigma akashiwo CCMP452)
TTCCCACAAGCTCCGGAGCTTGTGAGAATACATAAAAAAACCATGGCTTT
TAAATCTCCAATCCTGCTTCTTTGCCTCTTCCTGATGACTTCTCCTCTTG
CGCACGTTGGCGCTTCCGTCGGAACAACTCCTTACAGAAAGTACATGGAT
GTTGTTCTGGGCGGTGCCCAAGCCGTTGCTGAGGAGATTTACAGCTATGA
TGAAGAGTGCCTGGAGGAGGGCTTTGCCTGCGAGAAGAATGAGGAGTGCT
GCACTGGCTTCTGCTCCAAGATCCAGGGTGACTCTACCAACAAGGAGTGC
ATTGTGCGCGATGATGGGGGAGACGATGGCGAGTCCACTGTGGAGCCCGA
GTCGTCTCTTCCTGAATGTGAGGGCGTTGTCGTTCCAGGAGCTTACGTAG
GACCCTGCACACACACATCTTCCAAGAAGATCATGTTCATGAACAGCAAG
GGCCAG
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