mRNA_H-akashiwo_Contig81.45.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig81.45.1
Unique NamemRNA_H-akashiwo_Contig81.45.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig81.45.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig81contigH-akashiwo_Contig81:1703819..1706070 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size343
Hectar predicted targeting categoryother localisation
Exons3
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387993.07516-CDS-H-akashiwo_Contig81:1703820..17039081681387993.07516-CDS-H-akashiwo_Contig81:1703820..1703908Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig81 1703821..1703908 -
1681387993.0885475-CDS-H-akashiwo_Contig81:1704171..17043241681387993.0885475-CDS-H-akashiwo_Contig81:1704171..1704324Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig81 1704172..1704324 -
1681387993.0992336-CDS-H-akashiwo_Contig81:1705972..17060701681387993.0992336-CDS-H-akashiwo_Contig81:1705972..1706070Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig81 1705973..1706070 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig81.45.1prot_H-akashiwo_Contig81.45.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig81 1703821..1706070 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig81.45.1

>prot_H-akashiwo_Contig81.45.1 ID=prot_H-akashiwo_Contig81.45.1|Name=mRNA_H-akashiwo_Contig81.45.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=113bp
GRDRGHQERAGGRPPGARPDGGAAAGAERRGRGFLRSEDEKLQGLVTIIF
YIFDIDRNSAHEDEITSVSLLQSCAFKVLGILCRLEALLAFTICKMQTKE
TLEKYLQLGMDLG
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mRNA from alignment at H-akashiwo_Contig81:1703819..1706070-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig81.45.1 ID=mRNA_H-akashiwo_Contig81.45.1|Name=mRNA_H-akashiwo_Contig81.45.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2252bp|location=Sequence derived from alignment at H-akashiwo_Contig81:1703819..1706070- (Heterosigma akashiwo CCMP452)
GGGCGCGATCGAGGCCATCAAGAACGAGCTGGTGGACGACCACCTGGTGC
CCGACCTGATGGAGGCGCTGCTGCTGGCGCTGAGCGCCGCGGACGGGGGT
GAGGGGGAGGGGGAGGGGAGGGCGGGCGGGCGGGCGGGGGGGAAGAGCAA
CTACTGGCGGGGGGTTGAGGGGAGCCAGCACCCGCAGACAGACCCACCAA
AAAGCGGGTTTTATTATGAATAAAGGAGACCAAGGCTGCGAATCAGTGAA
TGAAACAAAGGAGCATTGTCGATGTATGTTATCTCAGAAAACAAATCAAC
TCAGAAAAAATGGAAATAGCACATGTCAAAGCCACAACATTGTAGCTTTT
CCCCCCAGCGGGGGAATGAAAAAAGCAAGAATAGATATACATATATATTT
AGGATAGCAGCACACGAACGATAAAGTCACCAAAAATCCCTACAAACCAA
ACAACAGCAGAGTGACAGAAACCACCAATAATCAGAAAATGGCGATTGAC
ATCATATGATGATGATGATGAATCTAATTTATTTTCCTTAAGGTCCAGCC
TTTTGGATGACTCGAAGGGCCAAGTCCCAGCATTCATACACTGACACTTC
CACTTCTATGGGTCCCATCTCTCGCCCCCCCTACTCATCACCAAAACTTG
AGAAAAAAGAACAGCCCACAGCAAGCCATAGCACAACATCCCCTGTTACT
TGAAAAGAGAGAGAAAATGGCATAATCACACATATATAGAGATCATTATT
CTTCTCTAGACTTGTTTCTTCGTAAAAACAAACTGCACTTACTCCCCCTC
CACCTTTGTAGTATGCCTCTCAGACGTGTATTGCAGGGCAGTCCACGCAA
GAGTACTGGGTATATTTATCTTGGGGGTATTATTCATGCATTGGCACCTC
TCACGTCCCCCCTTTCTCTTTCACGTTTTTTTTTGTTATGGTTTCTGCAG
TATATGACGGCGGTTGATATTTCTTGCCTGGTGATTTCTGTCACTCTGTG
TTTTTTTGTTCTTGACATTTTGTGTCACCATGCGTTTTGCATGAATTTTT
CTTTACTTTCACTCCTTTTTTACTTTTTTGCCAGGGGGGAGGCCGCGATG
TGATGGTGCCTTTGGCAAGTCCCATTTTTCATTTCTTCGGCGGAGATGAG
AGTTCTTCTGAGATAGCTTTGTGATCTATACTTGGCGAAGGGCAAAATTG
AAACGTCGTAACCTTTAACAGACAGTGATAATGCTCCTTTGTTTTACTCT
TCGCTGATTCGTCCACATGAATTCATTATGTTTTTCGTTTTTTGTTTTCA
TACATAACCCTGCAACTGTAGATTTAATAAGTTTGATCTGCACCACTCAT
CAGCACACCTGTCACAAAGAAGTAAGTACAACTGCTGAAAGCGATGGAAC
TGTTGAAGTACACCCAGATGGCTTGACAGTTCTGTAAAAGTTTTATACAA
GTGCAACTGCTTCTGTCTTTTTCATTATTAGAGAGGGGTAGCCTCTCAGC
GCATGAAAATCATGCAGCTCCTTACACAGAAGGATAGCCTCATCCATACC
TCTAGTTTCCATGGTGTACAGTTGGGAGGAAGTGGTGGATAGATTGGCAT
AAACAATCTCAAACACTTTGCAAATTTGAAATGCTGTCGAAATCATCACG
GAACATATCATGTAAATTCAAATTGATTGGCAAGAATACCTCTCTCTCCT
CTTTCTTTCCCTGTCATTTCTTCTTACATCCTGTATTTGCCACCAGGTTT
TTGCGGTCAGAGGATGAAAAGCTACAAGGCTTAGTCACAATCATTTTCTA
CATCTTTGACATTGACAGAAACTCTGCTCATGAGGATGAAATAACAAGTG
TTTCCCTGTTACAGAGCTGTGCCTTCAAAGTTCTTGGGATTCTATGCAGG
TTGTTATTATACATATATATTATATGCTGATGATGATGATTTTAGTTTAT
TTCAAGTCCACCACTTGGAGTATAATATAGTCACGAATGAACATGCAAGC
TCAAATATATGTAAAATGGGATGTATCTCTCCACCACAGGTGTTGTTAAA
TGCAAAACTGTGTGGTGTCATTCCCTGGCTTAACGGGCTTGAAATATTGT
ATATGTGTTGAGGATTGCGGCCTGCATACCACCTTTTGGTTACTGTTTTA
TGTTTGTGGCAGGTTGGAAGCACTATTGGCTTTTACCATCTGCAAAATGC
AGACAAAGGAGACCCTTGAAAAGTACTTGCAACTTGGTATGGATCTGGGC
GG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig81:1703819..1706070-

>mRNA_H-akashiwo_Contig81.45.1 ID=mRNA_H-akashiwo_Contig81.45.1|Name=mRNA_H-akashiwo_Contig81.45.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=339bp|location=Sequence derived from alignment at H-akashiwo_Contig81:1703819..1706070- (Heterosigma akashiwo CCMP452)
GGGCGCGATCGAGGCCATCAAGAACGAGCTGGTGGACGACCACCTGGTGC
CCGACCTGATGGAGGCGCTGCTGCTGGCGCTGAGCGCCGCGGACGGGGGT
TTTTGCGGTCAGAGGATGAAAAGCTACAAGGCTTAGTCACAATCATTTTC
TACATCTTTGACATTGACAGAAACTCTGCTCATGAGGATGAAATAACAAG
TGTTTCCCTGTTACAGAGCTGTGCCTTCAAAGTTCTTGGGATTCTATGCA
GGTTGGAAGCACTATTGGCTTTTACCATCTGCAAAATGCAGACAAAGGAG
ACCCTTGAAAAGTACTTGCAACTTGGTATGGATCTGGGC
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