mRNA_H-akashiwo_Contig81.44.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig81.44.1
Unique NamemRNA_H-akashiwo_Contig81.44.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig81.44.1 vs. uniprot
Match: A0A7S3UVX5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVX5_HETAK)

HSP 1 Score: 141 bits (356), Expect = 6.290e-41
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 2 
Query:    2 RKQMKGTAAAGQGHVPTLDSLATPPXXXXPSHXXXXXXXXXXXXXXXXXXXXRGGAPFQIPEAPPLIDPALTLYSRAQADQASPRSDAAAALLDRLSAHSP 304
            RKQMKGTAAAGQGHVPTLDSLATPPXXXXPSHXXXXXXXXXXXXXXXXXXXXRGGAPFQIPEAPPLIDPALTLYSRAQADQASPRSDAAAALLDRLSAHSP
Sbjct:   47 RKQMKGTAAAGQGHVPTLDSLATPPXXXXPSHXXXXXXXXXXXXXXXXXXXXRGGAPFQIPEAPPLIDPALTLYSRAQADQASPRSDAAAALLDRLSAHSP 147
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig81.44.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3UVX5_HETAK6.290e-41100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig81contigH-akashiwo_Contig81:1699841..1700924 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size306
Hectar predicted targeting categoryother localisation
Exons3
Cds size294
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387993.0186696-CDS-H-akashiwo_Contig81:1699840..16999001681387993.0186696-CDS-H-akashiwo_Contig81:1699840..1699900Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig81 1699841..1699900 -
1681387993.028748-CDS-H-akashiwo_Contig81:1700435..17006191681387993.028748-CDS-H-akashiwo_Contig81:1700435..1700619Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig81 1700436..1700619 -
1681387993.0385096-CDS-H-akashiwo_Contig81:1700864..17009141681387993.0385096-CDS-H-akashiwo_Contig81:1700864..1700914Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig81 1700865..1700914 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387993.0488925-UTR-H-akashiwo_Contig81:1700914..17009241681387993.0488925-UTR-H-akashiwo_Contig81:1700914..1700924Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig81 1700915..1700924 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig81.44.1prot_H-akashiwo_Contig81.44.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig81 1699841..1700914 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig81.44.1

>prot_H-akashiwo_Contig81.44.1 ID=prot_H-akashiwo_Contig81.44.1|Name=mRNA_H-akashiwo_Contig81.44.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=98bp
MKGTAAAGQGHVPTLDSLATPPPPLIPSHRLYLAPPPVAGGAAAATAAAR
GGAPFQIPEAPPLIDPALTLYSRAQADQASPRSDAAAALLDRLSAHSP
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mRNA from alignment at H-akashiwo_Contig81:1699841..1700924-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig81.44.1 ID=mRNA_H-akashiwo_Contig81.44.1|Name=mRNA_H-akashiwo_Contig81.44.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1084bp|location=Sequence derived from alignment at H-akashiwo_Contig81:1699841..1700924- (Heterosigma akashiwo CCMP452)
GCGCAAGCAGATGAAGGGCACGGCCGCCGCCGGCCAGGGGCACGTGCCGA
CCTTGGACAGGTGTGTCTGGGGCTTCTGCGTCGCATGGGGTGCACTCTCT
GCAATCCAAGTGGCGGTGGTGCAATCGTGTGTTGATTGACAACCCCCAGC
CACGAGCGGCGGTCTGCTGCTCTTCTACCCATCTTCAACCTGTCCTCGCT
AGAATATCTTATCTTGCATTCGTGAAATATACATGCTAAAAATATATATA
TAATGAAAGGAGGATGTGAAATTGTGGCTTCTTTGTTTGTTGCCTCCCCT
TCCAGCCTGGCCACGCCGCCGCCACCGCTCATCCCGTCGCACCGTCTCTA
CCTGGCGCCGCCGCCTGTTGCGGGCGGGGCTGCCGCCGCCACCGCTGCTG
CTCGAGGGGGAGCCCCTTTCCAGATCCCTGAAGCGCCTCCGCTGATTGAC
CCAGCTTTAACGCTCTACTCACGAGCTCAGGCAGACCAGGTGGGTGTAGT
CAACCAGTATTAGCCTTCCATCCCTACTTCTTGCTATATACCCACTATGT
TTTGATGATGCCCTGCAATTTCTGCTCTTCTGCTGTTTGTCGAAACAGTT
TAGATCCTTTAAGCTAGATAAATTATTGTATACATTCCCTATGGTTGAGA
ACAAAGAAGTTGTTTGTATGCTATACAAGGGTGCTGTGGGCAGGAAATGG
ATCAAGAGTGGGAGGATGTTATTACTGAGTGGTGGTGATCAGTTGGCGAT
GGAGGGGGCGAAACGTGGGTGCTGGGGAGAGATGGACAGAATGGGTTGTC
TGTGAGTACAAGAAAGTATAGGAAGTTTTATTGCAATTGGTGAGCCGGGA
GCCGGTGGTTTCATACAAAGTCGGGTGTACAGGATTCTCATTGCAATGGT
GTTGTTGCAGGTCTGGCTTCTGCTGCAGGAGCATATTGCATCATTCACGT
ATCATCTAATCAAACGTATGTGTGTGGGAGGAGGGAGCTTGTTTTGACGT
CGCCCCAACTGCCTTGCCCCACAGGCCTCCCCGCGCTCGGACGCGGCCGC
AGCTCTCCTGGACCGGCTCTCCGCCCACAGCCCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig81:1699841..1700924-

>mRNA_H-akashiwo_Contig81.44.1 ID=mRNA_H-akashiwo_Contig81.44.1|Name=mRNA_H-akashiwo_Contig81.44.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=294bp|location=Sequence derived from alignment at H-akashiwo_Contig81:1699841..1700924- (Heterosigma akashiwo CCMP452)
ATGAAGGGCACGGCCGCCGCCGGCCAGGGGCACGTGCCGACCTTGGACAG
CCTGGCCACGCCGCCGCCACCGCTCATCCCGTCGCACCGTCTCTACCTGG
CGCCGCCGCCTGTTGCGGGCGGGGCTGCCGCCGCCACCGCTGCTGCTCGA
GGGGGAGCCCCTTTCCAGATCCCTGAAGCGCCTCCGCTGATTGACCCAGC
TTTAACGCTCTACTCACGAGCTCAGGCAGACCAGGCCTCCCCGCGCTCGG
ACGCGGCCGCAGCTCTCCTGGACCGGCTCTCCGCCCACAGCCCC
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