mRNA_H-akashiwo_Contig81.15.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig81.15.1
Unique NamemRNA_H-akashiwo_Contig81.15.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig81.15.1 vs. uniprot
Match: A0A7S4D886_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D886_HETAK)

HSP 1 Score: 325 bits (834), Expect = 6.820e-110
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = -2
Query:  110 AKRFPDQTYILADLPEVIDTLDPSTLPKNFATEAVNFLETVPMADAYLLKHIIHDWDDKECIQIFSNIKETNPSATVYIMEFGPMPPPNVPHLAKAFDVHMGVCLSGHERTQEEYDCLFTRSGYKRVAIHLLGDGHYPLYVQEIQPEGEVVVPAS 574
            AKRFPDQTYILADLPEVIDTLDPSTLPKNFATEAVNFLETVPMADAYLLKHIIHDWDDKECIQIFSNIKETNPSATVYIMEFGPMPPPNVPHLAKAFDVHMGVCLSGHERTQEEYDCLFTRSGYKRVAIHLLGDGHYPLYVQEIQPEGEVVVPAS
Sbjct:  166 AKRFPDQTYILADLPEVIDTLDPSTLPKNFATEAVNFLETVPMADAYLLKHIIHDWDDKECIQIFSNIKETNPSATVYIMEFGPMPPPNVPHLAKAFDVHMGVCLSGHERTQEEYDCLFTRSGYKRVAIHLLGDGHYPLYVQEIQPEGEVVVPAS 320          
BLAST of mRNA_H-akashiwo_Contig81.15.1 vs. uniprot
Match: A0A7S2LTJ5_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LTJ5_9STRA)

HSP 1 Score: 202 bits (513), Expect = 1.520e-60
Identity = 93/149 (62.42%), Postives = 115/149 (77.18%), Query Frame = -2
Query:  128 AKRFPDQTYILADLPEVIDTLDPSTLPKNFATEAVNFLETVPMADAYLLKHIIHDWDDKECIQIFSNIKETNPSATVYIMEFGPMPPPNVPHLAKAFDVHMGVCLSGHERTQEEYDCLFTRSGYKRVAIHLLGDGHYPLYVQEIQPEGE 574
            AKRFPD  YILADLPE +  +D + LP  F+TEAVNFL++VP ADAY+LKHIIHDWDD+   +I +NI+E NP ATV+I+EFGPMP PNVPH++K FD  MGV LS  ERTQEEY+ LF+R GY    +HLL  G +PLY+QE++P  E
Sbjct:  233 AKRFPDCEYILADLPEAVARIDTAALPPTFSTEAVNFLDSVPKADAYVLKHIIHDWDDENSEKILANIREANPDATVFILEFGPMPGPNVPHMSKGFDCVMGVILSACERTQEEYNALFSRCGYSNAKVHLLAGGGHPLYIQELKPVTE 381          
BLAST of mRNA_H-akashiwo_Contig81.15.1 vs. uniprot
Match: A0A7S3QAZ1_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QAZ1_9STRA)

HSP 1 Score: 194 bits (494), Expect = 1.020e-57
Identity = 88/145 (60.69%), Postives = 113/145 (77.93%), Query Frame = -2
Query:  140 AKRFPDQTYILADLPEVIDTLDPSTLPKNFATEAVNFLETVPMADAYLLKHIIHDWDDKECIQIFSNIKETNPSATVYIMEFGPMPPPNVPHLAKAFDVHMGVCLSGHERTQEEYDCLFTRSGYKRVAIHLLGDGHYPLYVQEIQ 574
            AKRFPD  YI++DLPE +  +D S+LP NF+TEA +FL+T P+ADAYLLKHIIHDWDD+    I + IK+ NP AT++++EFGPMP PN+PHLAK FD+ MG+ L   ERTQEEYD L+ ++GY+RV  H L  G +PLYVQEI+
Sbjct:  232 AKRFPDCKYIISDLPECVARIDSSSLPSNFSTEAADFLKTAPVADAYLLKHIIHDWDDEHSRIILNTIKKANPDATIFVIEFGPMPGPNMPHLAKGFDLQMGLMLDALERTQEEYDALYKQAGYERVGSHFLAGGAHPLYVQEIK 376          
BLAST of mRNA_H-akashiwo_Contig81.15.1 vs. uniprot
Match: A0A7S2XUE1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUE1_9STRA)

HSP 1 Score: 186 bits (471), Expect = 1.650e-54
Identity = 85/147 (57.82%), Postives = 107/147 (72.79%), Query Frame = -2
Query:  140 AKRFPDQTYILADLPEVIDTLDPSTLPKNFATEAVNFL--ETVPMADAYLLKHIIHDWDDKECIQIFSNIKETNPSATVYIMEFGPMPPPNVPHLAKAFDVHMGVCLSGHERTQEEYDCLFTRSGYKRVAIHLLGDGHYPLYVQEIQ 574
            A RFP  TYILADL E +D +D S LP  F   A +F   E++P A AYLLKHI+HDW++++C+QI  NIK  NP A V++MEFGPMP PNVPHL+K FD+HM + + GHERTQ+EY+ LF +S Y     HLL  G+YPLYVQEI+
Sbjct:  204 AGRFPGSTYILADLKEAVDRIDDSALPPKFEKAACDFFKEESIPFAHAYLLKHILHDWNEEKCVQILENIKARNPQAKVFVMEFGPMPGPNVPHLSKIFDIHMAISVDGHERTQQEYNDLFYKSKYALAKTHLLAGGNYPLYVQEIE 350          
BLAST of mRNA_H-akashiwo_Contig81.15.1 vs. uniprot
Match: A0A7S3UBU2_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UBU2_9CHLO)

HSP 1 Score: 101 bits (252), Expect = 1.940e-22
Identity = 58/131 (44.27%), Postives = 81/131 (61.83%), Query Frame = -2
Query:  185 PDQTYILADLPEVIDTLD-PSTLPKNFATEAVNFLE--TVPMA-DAYLLKHIIHDWDDKECIQIFSNIKET-NPSATVYIMEFGPMPPPNVPHLAKAFDVHMGVCLSGHERTQEEYDCLFTRSGYKRVAIH 562
            P  T ++ DLPEV+  +  P+ L    +T A +FL+   +P   DAYLLKHIIHDWDD+  +QI SNI +     A VY+ E   +P  + P L+K FD+HMG+ LSG ERT EE++ L   +G K + +H
Sbjct:  184 PGSTGVVVDLPEVVGRVQVPAHLEGRMSTSAGSFLDRSAIPSGMDAYLLKHIIHDWDDEPSVQILSNIAQAMQDGAAVYLFEMI-VPEEDGPDLSKMFDLHMGLILSGKERTVEEFETLLQAAGLKLLEVH 313          
BLAST of mRNA_H-akashiwo_Contig81.15.1 vs. uniprot
Match: A0A2H5VP98_9BACT (Mitomycin biosynthesis 6-O-methyltransferase n=2 Tax=Bacteria TaxID=2 RepID=A0A2H5VP98_9BACT)

HSP 1 Score: 100 bits (250), Expect = 4.480e-22
Identity = 47/85 (55.29%), Postives = 63/85 (74.12%), Query Frame = -2
Query:  203 VPMADAYLLKHIIHDWDDKECIQIFSNIKETNP-SATVYIMEFGPMPPPNVPHLAKAFDVHMGVCLSGHERTQEEYDCLFTRSGY 454
            VP ADAYLLKHI+HDWD ++C++I SNI++  P +A V++ E+  +P PNVPH AK FD+HM     G ERT+EEY  LF R+G+
Sbjct:  235 VPAADAYLLKHILHDWDGEDCVRILSNIRKAAPLNARVFVAEYV-VPEPNVPHFAKLFDIHMMCATGGQERTEEEYADLFERAGW 318          
BLAST of mRNA_H-akashiwo_Contig81.15.1 vs. uniprot
Match: A0A1B4Q3R4_BURCE (Hydroxyneurosporene methyltransferase n=21 Tax=Burkholderia cepacia complex TaxID=87882 RepID=A0A1B4Q3R4_BURCE)

HSP 1 Score: 95.9 bits (237), Expect = 3.300e-20
Identity = 55/139 (39.57%), Postives = 76/139 (54.68%), Query Frame = -2
Query:  170 RFPDQTYILADLPEVIDTLDPSTLPK-----NFATEAVNFLETVPMADAYLLKHIIHDWDDKECIQIFSNIKET-NPSATVYIMEFGPMPPPNVPHLAKAFDVHMGVCLSGHERTQEEYDCLFTRSGYKRVAIHLLGDG 568
            +FP    I+ DLPEVID  D S   +            N  + VP AD YLLK I+HDW+D EC+ I    +E+    A V+++E   +P P V H +K +D+HM    SG ERT++EYD L   +G++ V I    DG
Sbjct:  193 QFPSLAGIVFDLPEVIDGDDESWAGRMGVGARCRQVGGNMFDAVPAADVYLLKLILHDWNDDECVAILRRARESARDVARVFVIE-RVVPAPGVAHFSKLYDIHMMCWGSGRERTRDEYDALLAAAGWRPVGIRHASDG 330          
BLAST of mRNA_H-akashiwo_Contig81.15.1 vs. uniprot
Match: A0A7C5WBC3_9BACT (Methyltransf_2 domain-containing protein n=1 Tax=Chlorobi bacterium TaxID=2268192 RepID=A0A7C5WBC3_9BACT)

HSP 1 Score: 91.3 bits (225), Expect = 6.690e-20
Identity = 45/85 (52.94%), Postives = 59/85 (69.41%), Query Frame = -2
Query:  203 VPMADAYLLKHIIHDWDDKECIQIFSNI-KETNPSATVYIMEFGPMPPPNVPHLAKAFDVHMGVCLSGHERTQEEYDCLFTRSGY 454
            VP ADAYLLKHI+HDW+D +  +I SNI K   P+A V++ E+  +P P+ PH AK FD+HM     G ERT+EEY  LF R+G+
Sbjct:   59 VPAADAYLLKHILHDWNDADSERILSNIHKAAAPNARVFVAEYV-VPGPDTPHFAKLFDIHMMCATGGQERTEEEYADLFERAGW 142          
BLAST of mRNA_H-akashiwo_Contig81.15.1 vs. uniprot
Match: A0A2X1GXV0_BURCE (Hydroxyneurosporene-O-methyltransferase n=112 Tax=Burkholderiaceae TaxID=119060 RepID=A0A2X1GXV0_BURCE)

HSP 1 Score: 94.0 bits (232), Expect = 1.700e-19
Identity = 54/141 (38.30%), Postives = 77/141 (54.61%), Query Frame = -2
Query:  170 KRFPDQTYILADLPEVIDTLDPSTLPKNFATEAV------NFLETVPMADAYLLKHIIHDWDDKECIQIFSNIKET-NPSATVYIMEFGPMPPPNVPHLAKAFDVHMGVCLSGHERTQEEYDCLFTRSGYKRVAIHLLGDG 571
            +RF   T ++ DLPEVID  D     +     A       N  + VP AD YLLK I+HDW+D EC+ I    +E+    A V+++E   +P P V H +K +D+HM    SG ERT++EYD L   +G++ V +    DG
Sbjct:  192 RRFGALTGVVFDLPEVIDG-DADDWAQRMGVSARCSKAGGNMFDAVPAADVYLLKLILHDWNDDECVAILRRARESARDGARVFVIE-RVVPAPGVAHFSKLYDIHMMCWGSGRERTRDEYDALLAAAGWRPVGLRSAPDG 330          
BLAST of mRNA_H-akashiwo_Contig81.15.1 vs. uniprot
Match: A0A7C2TRB5_9BACT (Hydroxyneurosporene methyltransferase n=4 Tax=Bacteria TaxID=2 RepID=A0A7C2TRB5_9BACT)

HSP 1 Score: 93.2 bits (230), Expect = 3.230e-19
Identity = 52/128 (40.62%), Postives = 74/128 (57.81%), Query Frame = -2
Query:  203 RFPDQTYILADLPEVIDTLDPSTLPKNFATEAVNFL-----ETVPMADAYLLKHIIHDWDDKECIQIFSNIKETNP-SATVYIMEFGPMPPPNVPHLAKAFDVHMGVCLSGHERTQEEYDCLFTRSGY 568
            ++P     + +LP VI+  +     K    +   ++       VP ADAY+LK ++HDW+D+ECIQI SN  E  P    V+IME   +P P+ PHL+K FD+HM V L+G ERT EEY  L   +G+
Sbjct:  192 KYPHLRGTVLELPSVIEQKELLWADKMGVGDRCTYVPGDMFREVPPADAYMLKRVLHDWNDEECIQILSNAHEAAPRDGRVFIME-AVVPGPDTPHLSKLFDIHMLVMLTGRERTTEEYAGLLEAAGW 318          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig81.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4D886_HETAK6.820e-110100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2LTJ5_9STRA1.520e-6062.42Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A7S3QAZ1_9STRA1.020e-5760.69Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2XUE1_9STRA1.650e-5457.82Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3UBU2_9CHLO1.940e-2244.27Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]
A0A2H5VP98_9BACT4.480e-2255.29Mitomycin biosynthesis 6-O-methyltransferase n=2 T... [more]
A0A1B4Q3R4_BURCE3.300e-2039.57Hydroxyneurosporene methyltransferase n=21 Tax=Bur... [more]
A0A7C5WBC3_9BACT6.690e-2052.94Methyltransf_2 domain-containing protein n=1 Tax=C... [more]
A0A2X1GXV0_BURCE1.700e-1938.30Hydroxyneurosporene-O-methyltransferase n=112 Tax=... [more]
A0A7C2TRB5_9BACT3.230e-1940.63Hydroxyneurosporene methyltransferase n=4 Tax=Bact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig81contigH-akashiwo_Contig81:721862..722436 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size575
Hectar predicted targeting categoryother localisation
Exons1
Cds size333
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387993.1351573-UTR-H-akashiwo_Contig81:721861..7219581681387993.1351573-UTR-H-akashiwo_Contig81:721861..721958Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig81 721862..721958 +
1681387993.1587143-UTR-H-akashiwo_Contig81:722291..7224361681387993.1587143-UTR-H-akashiwo_Contig81:722291..722436Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig81 722292..722436 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387993.1480234-CDS-H-akashiwo_Contig81:721958..7222911681387993.1480234-CDS-H-akashiwo_Contig81:721958..722291Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig81 721959..722291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig81.15.1prot_H-akashiwo_Contig81.15.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig81 721959..722291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig81.15.1

>prot_H-akashiwo_Contig81.15.1 ID=prot_H-akashiwo_Contig81.15.1|Name=mRNA_H-akashiwo_Contig81.15.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=111bp
MRSLGGRHNYFSLRLNLLNIKWIVTITQQMNCNAFVTTAGKQTVILFLGA
LMTRQANSHVNVEGLGKMWYVGRWHGTKFHNVHCGRWICLLDVGENLDAF
LVIPIMNNVL*
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mRNA from alignment at H-akashiwo_Contig81:721862..722436+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig81.15.1 ID=mRNA_H-akashiwo_Contig81.15.1|Name=mRNA_H-akashiwo_Contig81.15.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=575bp|location=Sequence derived from alignment at H-akashiwo_Contig81:721862..722436+ (Heterosigma akashiwo CCMP452)
CCATGTTTTGGTTGTTATTGCTGAGCGCGCAGAAAAAAAAACTGCCACCC CAAGACTGACATTTTATAAATTGGGACAGTGATGGGGTTTAACAGTGATG AGGTCACTAGGAGGCAGGCACAACTACTTCTCCCTCAGGCTGAATCTCCT GAACATAAAGTGGATAGTGACCATCACCCAACAGATGAATTGCAACGCGT TTGTAACCACTGCGGGTAAACAGACAGTCATACTCTTCTTGGGTGCGCTC ATGACCAGACAAGCAAACTCCCATGTGAACGTCGAAGGCCTTGGCAAGAT GTGGTACGTTGGGAGGTGGCATGGGACCAAATTCCATAATGTACACTGTG GCAGATGGATTTGTCTCCTTGATGTTGGAGAAAATCTGGATGCATTCCTT GTCATCCCAATCATGAATAATGTGCTTTAGAAGATAAGCATCTGCCATTG GGACAGTTTCCAGGAAGTTGACTGCCTCAGTGGCAAAATTTTTGGGTAGA GTAGAAGGGTCTAGAGTGTCTATCACTTCAGGTAGATCTGCCAAGATGTA TGTCTGATCTGGGAAGCGTTTGGCG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig81:721862..722436+

>mRNA_H-akashiwo_Contig81.15.1 ID=mRNA_H-akashiwo_Contig81.15.1|Name=mRNA_H-akashiwo_Contig81.15.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=333bp|location=Sequence derived from alignment at H-akashiwo_Contig81:721862..722436+ (Heterosigma akashiwo CCMP452)
ATGAGGTCACTAGGAGGCAGGCACAACTACTTCTCCCTCAGGCTGAATCT
CCTGAACATAAAGTGGATAGTGACCATCACCCAACAGATGAATTGCAACG
CGTTTGTAACCACTGCGGGTAAACAGACAGTCATACTCTTCTTGGGTGCG
CTCATGACCAGACAAGCAAACTCCCATGTGAACGTCGAAGGCCTTGGCAA
GATGTGGTACGTTGGGAGGTGGCATGGGACCAAATTCCATAATGTACACT
GTGGCAGATGGATTTGTCTCCTTGATGTTGGAGAAAATCTGGATGCATTC
CTTGTCATCCCAATCATGAATAATGTGCTTTAG
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