mRNA_H-akashiwo_Contig81.10.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig81.10.1
Unique NamemRNA_H-akashiwo_Contig81.10.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig81.10.1 vs. uniprot
Match: A0A6V1N8Z5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1N8Z5_HETAK)

HSP 1 Score: 251 bits (642), Expect = 2.150e-83
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 2
Query:  143 VVDQNMPAFVLAPDLEEWVTLQLNLLNWSYMNTEYRVKTSTHIFRIKNYLKERHGRIEELIICKDSFSEANEMADEMKTLEDYGVKGAPEDHEPPARCPIFYDFKQSDHHDPLLLVWNS 499
            VVDQNMPAFVLAPDLEEWVTLQLNLLNWSYMNTEYRVKTSTHIFRIKNYLKERHGRIEELIICKDSFSEANEMADEMKTLEDYGVKGAPEDHEPPARCPIFYDFKQSDHHDPLLLVWNS
Sbjct:   30 VVDQNMPAFVLAPDLEEWVTLQLNLLNWSYMNTEYRVKTSTHIFRIKNYLKERHGRIEELIICKDSFSEANEMADEMKTLEDYGVKGAPEDHEPPARCPIFYDFKQSDHHDPLLLVWNS 148          
BLAST of mRNA_H-akashiwo_Contig81.10.1 vs. uniprot
Match: A0A6H5JSB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSB9_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 1.390e-40
Identity = 66/119 (55.46%), Postives = 89/119 (74.79%), Query Frame = 2
Query:  146 VDQNMPA--FVLAPDLEEWVTLQLNLLNWSYMNTEYRVKTSTHIFRIKNYLKERHGRIEELIICKDSFSEANEMADEMKTLEDYGVKGAPEDHEPPARCPIFYDFKQSDHHDPLLLVWN 496
            VD  +PA   +  P  EEWVTL L LLNW +++ ++RV+T+THIF IKN L E HGR+ +LI+CK++F+EANE+ DEM+TL+ YG+KGAP   +PP   P+FYDFK   + +PLLLVWN
Sbjct:   25 VDGPLPAEPALAMPSDEEWVTLDLKLLNWKFLDFKHRVRTTTHIFTIKNLLLEHHGRVADLIVCKEAFTEANELKDEMQTLKGYGIKGAPRGVDPPVMVPLFYDFKPIAYDEPLLLVWN 143          
BLAST of mRNA_H-akashiwo_Contig81.10.1 vs. uniprot
Match: D8LEG3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEG3_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 6.990e-37
Identity = 64/117 (54.70%), Postives = 86/117 (73.50%), Query Frame = 2
Query:  146 VDQNMPA--FVLAPDLEEWVTLQLNLLNWSYMNTEYRVKTSTHIFRIKNYLKERHGRIEELIICKDSFSEANEMADEMKTLEDYGVKGAPEDHEPPARCPIFYDFKQSDHHDPLLLV 490
            VD  +PA   +  P  EEWVTL L LLNW +++ ++RV+T+THIF IKN L E HGR+ +LI+CK +F+EANE+ DEM+TL+ YG+KGAP   +PP   P+FYDFK   + +PLLLV
Sbjct:   25 VDGPLPAEPALAMPSDEEWVTLDLKLLNWKFLDFKHRVRTTTHIFTIKNLLLEHHGRVADLIVCKGAFTEANELKDEMQTLKGYGIKGAPRGVDPPVMVPLFYDFKPIAYDEPLLLV 141          
BLAST of mRNA_H-akashiwo_Contig81.10.1 vs. uniprot
Match: A0A485K3I0_9STRA (Aste57867_661 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K3I0_9STRA)

HSP 1 Score: 122 bits (305), Expect = 2.790e-32
Identity = 60/116 (51.72%), Postives = 82/116 (70.69%), Query Frame = 2
Query:  146 VDQNMPAFVLAPD-LEEWVTLQLNLLNWSYMNTEYRVKTSTHIFRIKNYLKERHGRIEELIICKDSFSEANEMADEMKTLEDYGVKGAPEDHEPPARCPIFYDFKQSDHHDPLLLV 490
            ++QN P  V  PD +EE+VTL + LLNWSY+N  +R KTSTH+F IK  +++RHG I  L ICKD F+E+NE+ D+M +L DYG+ G P+ H+    C I+YDFK + H +PLLL 
Sbjct:   27 MEQNAPLDV--PDEIEEYVTLDMRLLNWSYLNFRFRTKTSTHLFSIKQEIEKRHGPITNLKICKDHFAESNELTDDMLSLHDYGIDGGPQ-HDKEVVCLIYYDFKPTQHDNPLLLA 139          
BLAST of mRNA_H-akashiwo_Contig81.10.1 vs. uniprot
Match: A0A7S2V1Q2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1Q2_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.050e-31
Identity = 52/87 (59.77%), Postives = 71/87 (81.61%), Query Frame = 2
Query:  146 VDQNMPAFVLAPDLEEWVTLQLNLLNWSYMNTEYRVKTSTHIFRIKNYLKERHGRIEELIICKDSFSEANEMADEMKTLEDYGVKGA 406
            +D+  P  V+ PD ++WVTL +NL+NW YMN ++RVKT+THIF +KN L+E+HGR+ +L++CKDSF E NEM DEM+TL DYGV+GA
Sbjct:   27 LDEFQP-LVMLPDTDQWVTLDMNLMNWKYMNFQHRVKTTTHIFTLKNMLREKHGRVSDLVLCKDSFREENEMNDEMQTLADYGVEGA 112          
BLAST of mRNA_H-akashiwo_Contig81.10.1 vs. uniprot
Match: A0A1V9Y8X4_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y8X4_9STRA)

HSP 1 Score: 119 bits (297), Expect = 4.240e-31
Identity = 57/115 (49.57%), Postives = 78/115 (67.83%), Query Frame = 2
Query:  146 VDQNMPAFVLAPDLEEWVTLQLNLLNWSYMNTEYRVKTSTHIFRIKNYLKERHGRIEELIICKDSFSEANEMADEMKTLEDYGVKGAPEDHEPPARCPIFYDFKQSDHHDPLLLV 490
            VD       +  + E++VTL L LLNWSY+N +++VKTST +F +KN L++RHG++  L ICKD F+EANE+ D+M TL +YG+ GAP   E    C I+YDFK   H +PLLL 
Sbjct:   24 VDPEYVPLSIPDEAEDYVTLDLRLLNWSYLNFKWKVKTSTRLFALKNELEKRHGQVTNLKICKDHFAEANELTDDMMTLREYGIDGAPS-FEKEIVCLIYYDFKPKQHDNPLLLA 137          
BLAST of mRNA_H-akashiwo_Contig81.10.1 vs. uniprot
Match: A0A2D4BP18_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BP18_PYTIN)

HSP 1 Score: 117 bits (294), Expect = 1.270e-30
Identity = 58/110 (52.73%), Postives = 73/110 (66.36%), Query Frame = 2
Query:  161 PAFVLAPDLEEWVTLQLNLLNWSYMNTEYRVKTSTHIFRIKNYLKERHGRIEELIICKDSFSEANEMADEMKTLEDYGVKGAPEDHEPPARCPIFYDFKQSDHHDPLLLV 490
            P  V+ PD+  +VTL + LLNWSY+N   R KT+T +F IK  +++RHG I  L ICK  F+EANEM  +M TL DYG+ GAPE +EP   C I YDFK   H +PLLL 
Sbjct:   31 PPLVIPPDVPHFVTLDMRLLNWSYLNFRIRTKTTTRLFAIKQQIQKRHGPIMHLKICKGHFAEANEMQQDMATLIDYGIDGAPE-NEPEVICVIHYDFKPQQHDNPLLLA 139          
BLAST of mRNA_H-akashiwo_Contig81.10.1 vs. uniprot
Match: A0A1V9YN99_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YN99_9STRA)

HSP 1 Score: 117 bits (292), Expect = 2.550e-30
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 2
Query:  149 DQNMPAFVLAPDLEEWVTLQLNLLNWSYMNTEYRVKTSTHIFRIKNYLKERHGRIEELIICKDSFSEANEMADEMKTLEDYGVKGAPEDHEPPARCPIFYDFKQSDHHDPLLLV 490
            D +     +  +  E VTL + LLNWSY+N +++VKTST +F +KN L++RHG I  L ICKD F+E NE+ DEM +L +YG+ GAPE +E    C I+YDFK + H +PLLL 
Sbjct:   27 DADYVPLAIPEETVELVTLDMRLLNWSYLNFKWKVKTSTRLFAVKNELEKRHGPITNLKICKDHFAEGNELTDEMMSLHEYGIDGAPE-YEKEVVCQIYYDFKPTQHDNPLLLA 139          
BLAST of mRNA_H-akashiwo_Contig81.10.1 vs. uniprot
Match: A0A7S2WAM6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WAM6_9STRA)

HSP 1 Score: 116 bits (290), Expect = 6.600e-30
Identity = 56/102 (54.90%), Postives = 72/102 (70.59%), Query Frame = 2
Query:  194 WVTLQLNLLNWSYMNTEYRVKTSTHIFRIKNYLKERHGRIEELIICKDSFSEANEMADEMKTLEDYGVKGAPEDHEPPARCPIFYDFKQSDHHDPLLLVWNS 499
            +VTL L L+NW +MN+  RVKTS  +F+IK+ ++ RHG ++ L++CK  FSE NE+ D+M TLED G  GA ED E P    I+YDFK  DH DPLLLV NS
Sbjct:   43 YVTLDLKLMNWDFMNSTLRVKTSMRLFQIKDEIQRRHGLVKNLVLCKGVFSEVNELKDDMATLEDLGFPGAMED-EKPVSATIYYDFKAQDHDDPLLLVRNS 143          
BLAST of mRNA_H-akashiwo_Contig81.10.1 vs. uniprot
Match: T0PPP4_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0PPP4_SAPDV)

HSP 1 Score: 114 bits (285), Expect = 2.650e-29
Identity = 55/100 (55.00%), Postives = 72/100 (72.00%), Query Frame = 2
Query:  191 EWVTLQLNLLNWSYMNTEYRVKTSTHIFRIKNYLKERHGRIEELIICKDSFSEANEMADEMKTLEDYGVKGAPEDHEPPARCPIFYDFKQSDHHDPLLLV 490
            E VTL + LLNWSY+N +++VKTST +F +KN +++RHG I  L ICKD F+EANE+ DEM TL +YG+ GAP   E    C I+YDFK + H +PLLL 
Sbjct:   38 ELVTLDMRLLNWSYLNFKWKVKTSTRLFAVKNEIEKRHGPITSLKICKDHFAEANELTDEMLTLHEYGIDGAPA-FEKEVVCLIYYDFKPTQHDNPLLLA 136          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig81.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1N8Z5_HETAK2.150e-83100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6H5JSB9_9PHAE1.390e-4055.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEG3_ECTSI6.990e-3754.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A485K3I0_9STRA2.790e-3251.72Aste57867_661 protein n=1 Tax=Aphanomyces stellatu... [more]
A0A7S2V1Q2_9STRA1.050e-3159.77Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A1V9Y8X4_9STRA4.240e-3149.57Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A2D4BP18_PYTIN1.270e-3052.73Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A1V9YN99_9STRA2.550e-3049.12Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A7S2WAM6_9STRA6.600e-3054.90Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
T0PPP4_SAPDV2.650e-2955.00Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig81contigH-akashiwo_Contig81:470393..482629 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LEG3
Model size543
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons6
Evalue1.34e-38
EggNOG OGs2CYNG@1|root,2S5BB@2759|Eukaryota
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_004810.1
Cds size447
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig81.10.1prot_H-akashiwo_Contig81.10.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig81 470434..482574 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387993.5383456-UTR-H-akashiwo_Contig81:470392..4704331681387993.5383456-UTR-H-akashiwo_Contig81:470392..470433Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig81 470393..470433 -
1681387993.6251168-UTR-H-akashiwo_Contig81:482574..4826291681387993.6251168-UTR-H-akashiwo_Contig81:482574..482629Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig81 482575..482629 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387993.5492957-CDS-H-akashiwo_Contig81:470433..4705531681387993.5492957-CDS-H-akashiwo_Contig81:470433..470553Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig81 470434..470553 -
1681387993.5644193-CDS-H-akashiwo_Contig81:481274..4813731681387993.5644193-CDS-H-akashiwo_Contig81:481274..481373Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig81 481275..481373 -
1681387993.5764728-CDS-H-akashiwo_Contig81:481748..4818171681387993.5764728-CDS-H-akashiwo_Contig81:481748..481817Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig81 481749..481817 -
1681387993.5911798-CDS-H-akashiwo_Contig81:482056..4821341681387993.5911798-CDS-H-akashiwo_Contig81:482056..482134Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig81 482057..482134 -
1681387993.6015096-CDS-H-akashiwo_Contig81:482254..4823041681387993.6015096-CDS-H-akashiwo_Contig81:482254..482304Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig81 482255..482304 -
1681387993.6136403-CDS-H-akashiwo_Contig81:482543..4825741681387993.6136403-CDS-H-akashiwo_Contig81:482543..482574Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig81 482544..482574 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig81.10.1

>prot_H-akashiwo_Contig81.10.1 ID=prot_H-akashiwo_Contig81.10.1|Name=mRNA_H-akashiwo_Contig81.10.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=149bp
MGGKKKAVKKGGAKKKKSSKSATDEEKQQVVDQNMPAFVLAPDLEEWVTL
QLNLLNWSYMNTEYRVKTSTHIFRIKNYLKERHGRIEELIICKDSFSEAN
EMADEMKTLEDYGVKGAPEDHEPPARCPIFYDFKQSDHHDPLLLVWNS*
back to top

mRNA from alignment at H-akashiwo_Contig81:470393..482629-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig81.10.1 ID=mRNA_H-akashiwo_Contig81.10.1|Name=mRNA_H-akashiwo_Contig81.10.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=12237bp|location=Sequence derived from alignment at H-akashiwo_Contig81:470393..482629- (Heterosigma akashiwo CCMP452)
ATGACATTGACATTGATAACCACTTCTTTGGCATTTTGATACTTCGTGTG CGAAGATGGGTGGTAAAAAAAAGGCCGTAAAGAAAGGTACAAAATAAAAT TTCTGGATCTCTTTTCTTGATTCGGCGATACAATGTCTTTTAAGCAAGAT GGACCTATTACTAATATATCCATATCTATCATCACAGTCCAAAAACCTTT GACATATTGCCTTCTTGGCAGTATGGATGGAGCTATACTCACTGATGATG AAAGCGGTCTCTGTTTAGACCCAACACTTTGCAATCACAGTCCATATTAA TATTATTCTTGTTGTCTGCTTCTAGGAGGGGCCAAAAAGAAGAAGTCCTC CAAATCCGCGACAGATGAAGAAAAGGTGTAACTGTTTTTTTTGGTACACC AACTGCGAAATCAGAAAGCCTTTCATGCTCACAAGCGGGTTACAACCGGC GATGAAATTTAATAATGCTTTTATGTCATTCAATTGCTTGAACAGCAACA AGTAGTTGACCAGAATATGCCAGCTTTTGTTTTGGCACCTGACTTAGAGG AGTGGGTCACTCTGCAGCTCAATGTAAGTGGTAGAACCTGCCCCAAATTC TTTTACGCAAGCCCACTTTGTTTTGCACTATATTTCCCGTTTTTACTATA CACATATCTCAAATATTTTTGGAATTGGACCAAACGAGGCTGGATTGTTG ATGATTTCCACAAACCCTTATATTTTTATCTCCTCATTTTTGTTGTTAGT TGATGCCCCTCACCCCCCCACTCCGCCACCCATTCCTCCACGGCCTATGT GGCATGCCCTAGTTACTAAACTGGAGCTACATGAACACAGAATACAGAGT GAAGACATCGACACACATCTTCAGGATAAAGGTATAAATGAATGCAACCA GTAACGACAAAATTTTGCACTAGATTCATTAAAATCTTTTTGAACTTATG CTTCAAGAAAGGACGGATGCAAAATGTTTCAGCATTGTTTTATTAAGTTG ACACAGAGTTATTGCAACGAAGAAGGTTGGTCAGGGTTGACCCAATAAGG CAATTGTCATTGAGACATCCACACCTCCCTCAAAACAGCGGAATCAAACA ATTTTTTCATGGCTTGTATAGAGTTCGACAACAGATTTTTTATTATCACT TCTGTTGTTGTTGGGCCGACTTTCTTAAAAAGTTAATCTACTTAATTATC CCTTTGTGAATCCCCCATACAAATACATTGTAATATTCTCATACCACTGC TCTCAGAACTACTTAAAAGAAAGGCATGGAAGGATCGAGGAGCTCATCAT ATGCAAGGATTCTTTCAGTGAGGCGAATGAAATGGCTGATGAAATGAAAA CACTGGTACGTATGATCGACCAAAATTCATCACAATCATACATGTTTGTA TGTGCCAATGGGTCAGGATACAGAGCCCACAGGCTGTAAACCGAGGACCG CAGAGCTCAAAAAGCGGGTACGACATGCTTCTTTGGGGCCCCCTTGAGGC TTGAAACACGAAATGCATATATATTTAAAGCGCGCTGTCGTCCTAAGGCC CAAAATATTCAAGTGAAGACAATCACCGACTTTGCTGGAACGTGGATTCA ATACAGAATTGCGATGTATCAATTATGTGATGAGGCAATTTTTTGGCAAT CTTGGGGGGACCAGAACATGCAAGACATCCGAGACGTTGTATCTTGACCT TTGACCGGTCAAGACTTTGGAACCTGTATTGGAGTGCAAGAAAATTCAAG TTGATGAACTTCCTTTTTTGCAAGTCTTTTACAAAATATATATATCATAT ATAGTTGTGACTGAGTTTGTTGTGGGAACTAGATTCACAAGACTAATCAA TGGCAGATTGATATAAATAAGGACAGTTTTTATTTAACCCAACATGATCA GAACTTCATAAGAATTAAAAATTTTGATTATCAAGAGTCCGATCTTCTTC AGTATTTCCAGCCGCTTTTGATAATTCGGCTGGGTAAAACATCAATAGTC GGTGTCAGGCTAAAGGGGACAAGCGCTCTATGGGAAATGCGGCAAATTCC GCAAGACCCAGACTCGAACCCGGATCTGACGTAAAAACGAATCAGTAGAG CGCTTTAGCCGCACGGCCAGTTATCCTTGCTGTGCAGCAAAGATTTAAAA TATATGACCTTCGACTTAGAATTCTAAAACTGCCTCCTCCTCTTCAAAGC TGTATATCTCAAAAAGTTGGCTTGGGAAATTTGCGGTGAATATCTGAAAG TGCAAATTTGTCGAAAATTTGCATTTTCAGCTATTCACCGCATTTTCCCA AAAGGAACGCGCTTTTTTTTTCGGGGTTATTAAGCCAAATCCTTGTATAC TCTAGCGTGACACCAACTCAATGAAACTTCGCTCCCAACACCAAGAACAC ACAACCCCGCCGCCATTCGCTCATACTCGCAACAACGCCAAGAGAAGGAG GATGTGCCTTTTCCCAAAAAGTTATTTACGGGAAAGGGGCTGAGATAAAA AGGAAAAGGACGCCGGTAACCCCCCAGACAAATCAGTAGGATAATTGACC TTCCCGTAGAGAGATGCTTATGGAGTATTTCCGAGCTGAATTATAACCAG AGGGGAATACTGATGATGATCGGACTCTCCATCGAAATGTTTTGTAGTTC TTATGAAGCTCTACCGTTGGGTATAAAAAGTGTGCTCATCAATCTTTCAT TGCTTCTAGTAAGTACCTGTCTGTAGTATTATGTGTTGTTGTCGAGATCT GTATCGAGGCACATTTCGGGACAGTAAACTTGGTTCAAGTGTAACCGCAA TCCATTGCGATAATCAAGAACCCGGATAGATGCTCGTGGTCATGTGTTTT CAATGTTGACGAAGCGTTTGAGCCAACTACCTCATGATTGGTGTTTTAAA TATATATATGAGGACAGGCGGTTGGCCAAATGGTAAAATTATAGTTGTTA TTTATTCATGGATTGACCATGATTGGCCAAAGCCACCTCTTCACCAGCAG TAGGCAAATACATCAGTGAATGATGTATACTACTGGTGGTGGTGGTGGCC GCAGATTAATCACTACTGTGTTCTGGTGGTGCCGAAGCAGGAGAAGGAGG CAGGCCGCCCATCAGCAGTAGAAATCATTCTTGTTTGATTACAAACTGAT ACATATTTTTATAGTTATTCTTTATTAACCGAGTTTCACCCACCCATCCA CTAATATAATGCAAAACCCCGCTGCTGCTCACACATTCTAGAACAGCAGC CCCCCAAAAGGCCGCAAGGCCCAACTCCCGGAATATGGAAGAAGAGAAGA GGGAGTATACCAATTTGAACGGTATGGGCACCACGATAACGGTGAGACTT CCTCTTGCGTTTTCTTGCTGTCTTCTGGGATGCCGAGCCAGTGTTGCCCT CTAACGACACTAGGCGTGTGTTGTTACACTGACCGCACTTCTCGGGCTGA TTCCTGTGGATGGAGAAAGATTGCAGACGACGCCGTCACCATATATCTGG TTGGTGAACTATCTGTGCTTCAATTTGGCTTCGAAAGACTTTGTAGCCGG CCCTAAAACAACCCCTCAGTCTTGCCCAAGCCTACCTGATGCCGGAGCGA GATGACCTTCTTCTTACAGCAGAAGCTGTTCTCGTCGCTGACAGTACAGG ACGAAGCATGGCTGATCACCTACAGAGCAAGAGTAAGTGAGCGCCTGCAA GAGGAAGCGTACAGTGAGCGCCTCGACGAACGCAATTGCCTCCTATACAG ATCTGGGTGGAGCGTTGTTGTCGAGATCCGTATCGAGGCAAATTACGGGA CATCAAACTTGGTTCGAGTGTTATCGCAATCCGTTGTGATAACCGAGAAC CCGGATAGAGGCTCGTGGTCATGTGTTTTCAATGATGACGAAGCGTTTGA GCCAACTACCTCATGATTGGTGTTGTTTATATATTATATGAGGACAGGCG GGTTGCCAAATGGTAATTAGTTGTTATTGATGATGGATTGACCATGATTG ACCAAAGCCACCTTCACCAGCAGCAGGCAAATACATCAGTGGATGATGTA TACTACTGGTGGTGGTGGCCGCAGATTAATCACTACTGTGTTCTGGTGGT GCCGCGGCAGGAGAAGGAGGCAGGCCGCCCATCAGCAGTAGAAATCATTC TCGGTTGATTACTACTGACATATACATATTTTTTTGATCCAAGGGCCTGG TTCCCGGCCCTCTGGTGTCCTCGGATCCGAGGATTGATCGCGGGAGTCAA ATTTTCTCTTTGTCCCTACGGATTATAGATAACTACATATTATAGTTTAT TAAACGAGTTTCACCCACCCATCCACTAATATAGTGTAAAACCCCGCCGC TGCTCATACATTCATTCTAGAACAGCAGCCCCTAAAGAGGCCGCAAGGCC CAACTCCCAGGAGACGGAAGAAGAGAAGAGGGAGTATACCAATTTGAACG TCATGTAAATATGTAATTAAAGAAGTGGTGCCTTGGCAAGTCCTACTTTT ATTATTTCTTCCAAATTTTTTCCTTCTGTGATGGCTTTGTGATCTACCTT ATGATAAAGTGGAAAGTGTTTTTTTGTTCAATAATCAGAAAGACCCATAA AAATGATACAAAAACCTTGATTTGTGGTTTCAAAACTGCAATATTTTTTA ATTCTGGACTTTTGGTACCACAGTAGGATACAGAGGGAAATTCAACAACT TACTTATCTGACGTCATAACCTTTAAAAAATATACAGACAGTGGCAATGC TCCTTTGTTTGATTCACTGATTCGTTCGCATGAATTCATTACTTCTGTAT ATATATACTTACTGCACTTAATTATAGTCTGAACAGATAGACGGGCCTTC TTCAGTGATGATGGTACAATCGGGCGCCCCATCATCCTCAGTGAAACAAA CGGTAGAACTTTTTATTGGTCAGGTAGAAAACTATACTACTTCTTGATTC CCACTTCATGACAAAGACCGGTTTCGGCTACTACAAGCCAAGGGCTGGCA CTACTTCATCCACCAGCCACCAAATCATCAGTTTGCCTCTAAGTATCGCC TAAAAAAACGCTAAAGGGGGGTCAAAAAGGGCCGTTTTTGGAAGATTTTC GTAAATGTTCTAGGATGGTAGTTTTAAACCAAATAATATTACCAGCTTGC CCAAATTGTGGAAGTGATGAAGAGGATAGAAATCATTTTCTGAATCAATG CCCTGCTTATGATGAAATCAGATGCAAGCTGATTAGAAAGAACTCGGACG TTTTTTTTTTTTTTTTTTTTAAATATCAAAGGGCTTAAAGGTATTACAAC CTTTGTCAAGCCGTTTTAAGCCTATAAAACAGGGTGGTTTTGTTGCACTT CTGCTTGCCCATCCTTCACTACATCAGGTTACAACAACAACACCAAAGTA CCGCTGCTACCCATATCATTTTTTGGGGGGGGTTAGTTTGAATCACCATC TACAAAGTATACTAAAAAAAAAACGAAACAAGTCAACAACACAGCAGAAA CAAACAAACAAACATAAAAATAATACCACAAACAAAATTAATAACCTAAT GAATAAACAACAATATAGTAACCGCTACAACAACAAATAAACAAACAAAG AACTCGGACGTATTGCAGTACTGGCCAGTATCAAATAAGAATGGTGGTTA GATAAGAAAAGGAATGTTGGTATTCTATTGGAATACATAATTTCGACCAC CAAGCGTTTTGAAAGCAGCTGACCTATTATTTATATTTTTATTATTATTA CACTACTCAGTAGCAGCAAATATATACATATTATTGTTATTGTATGTAGG ATTGGTGTTCTGTTTTCTTTATTTAGATCTGATTTGTTGTCTCGAACCAA AAAATCACAAAAAAAATGATATTATGTGTGCAGTGGTTGCTGGTGTTGTT GTTGTGTTGTCCAGTAGCGTATGATGAGTAGGATTGTCAATGCAACAATT TCATATGCACTTTCCCCGAACGAGGTACGACAGCTTCTTGCTAAGTACCG TATTAATTTAAGGAGAAAAAAAAAAGTTGTATTGTTTAAACATACAAACT TATATCATATTTAGGCCAAATATTCAAAACTTCTTCTTCTTCTTCCACAT TTTCTAGCATGCTGATCACTATATAATGAGGAAGAGGAAGAGGAAGAAAA AGCAGGAGGAGGAGATCTTCTGGTATAGTTGCAAGGGAAGAGAAATAGTT TTTTATCCCACTTTGTGTTTTTGATAACTCAGCCCTAGCAGTCATGAATT TGGCTTGTGTTGCCAATTTACCATTAGCTTTGCGTAGCTCCTTCTGCTTG GCTTTTGCAGTTTCACTTTGAGTTTCCCCACCATCTCCTCGAATCCCTCT TCTTCCAGCATCACTTTTATTGAAGAATGATCCCTACACCATGAACTACG GCAAGTAGCAAGACCTTCCGGTAGCTGCAAGACCAACAGAAGAAGAAGAA GACTTACTTGAGTTATGGATGACTACAAGATCATTACATACCGTCGGGTA TTTCCAGTGTCGACTAGTGAGCCTGCTTACGTACGTGAAACTTCTAGAAG GAGCAGCAGTTGTTCTACACTTGCATCATCATCATACTACTACTATTGTA CTCGGCGGCCATTGCCGCCGATAACCTACCTGTAAAATTGTTTGCCCTTG ATGCTCTTACAAAGGTGGTTCATTGGTCCCCTTGCGGGTACTAGTAATGC TTGATCGTATTTTTACTTCAACATTATCGGCGGCAATCCTTCAGGCAACG CTGAGAGCGACCTGTCGTATAAAAAGGGCTGTTTCGAAATTGCCAGACTC GGGGGGCAATTTTTGTTTTCTGTAGAGGCTCGAGACAAGCCGATGTGGAC ATCAGTCAGCGATCCAGCACCAATTGCTTGACTAAAAGCCGACTCCAAGA GAGTGACAGGCAGAGCAAGGTCCGAAGCGAGGCCTTGCGTGAAAGGCTCC ATGTGAGGGTCCGCCATGTACACGTCCCTTTCTCTTGATTGGCGATTTTT TCCGACTGAGAGGGTTGCAGGAGCTTCCTTCCACCAGAGTCGTTTCGTCC AGTCCAGCCAAAACCCCGAGATCCAGAATCAAGAGTCCTTCCAAGAACGG ATGATGCAGTCTTCAACATTCGAAATTCCAACTGCGCAAAATCTCTGCAG GATGAGTCGGATTCTCCCTGCGAATCACGCTGGCTTCTGGGGAGATGGCA CCACCACTTTCCTATTCCTGCTGTGTTACAACCCTGGATCAAGTGTTCGG CCAAGCATCTGAGACTGGGGGAGCTATACACTGCCATGGTGTGAGCGGCA CCAGCCTGCTTTCCACACCTGCACACCACCACTGTGGGCGGTCCTTGCCG ACACTGCGGGGGAGGTGCTTCCAGCATGGGTGATGATCACCATGCCCACC ACACCACCACTGGGGATCTGCTATGGATAGTTCAGGGGTGTGCCCATGGA GTCTTTCTCACATGGTTTCCCTGCAGTGCAGACGGTGATACTGCCACTGG AACTGTATAAAGTCTTATCGTTTGGCCTAAAGTCCCCAGGTCAATCGGAC CAGTTCACTGTTCCTGAATGGATACAGGGAATGCATGGTTAAATAGGTGT TAACCTTCAACAACTTTGACCTCGTCAGCAGTGTATCGCCGCTCTATCTG ACGACGTTTTGCATTTTTGTTAACGTACTTTAGAAGGTTGTCGCTTGATT TCCTCACAGGTACAAACAGCGAAGGCTGCTCCATTTTTCTTTTTTTCTCC ACCGAAACAGACTGCTATTGCTTGTCTAACGAGTTGCAGTCGTCGTTTTC TTCGGGTATGAGCTGGCATTTTACTTTGTACTTGGCACAAGCAGCGCATT TCACTACCCTCGGTCGAACCATAGGTAAAAAATGTCATTGATATACAGTA TGCACAGTGATGTTTTTCGAAAAAAGTTGTCGTCAAAGGATGAGCTTCTA GAACAGCTATATATAGGAGCAGCAGCAGGAGGAGGAGTACATACGGCATC ACCACCACCCACCACCACGCGCGCAAAAAATGGAAAAAAGGCGAACAAGA GGGAAGAAGAGGTGGTGGCAACCAAAGAAGAAGAATAATTATCCCGAAAT TCTATATCTTACATCCCGAATTCCTCCAGGCAGGAGCTATTCAGAGGGAA AATGCGAGTTTTCGGGAATTAAAGAGAGAAATTCGCATTTTTTTTTTTCA AATACGCTTAACCTCGGGCGTCGGTAGATACACGTTTTGCGCATGCTTAT GTGTTTCGAGGGGGTTAAAACCGGTTCTTTTTTTCGCGAAAAAAATCCCA AGCAAATCCCACCCCTTTAGCGTTTTTTAAGGCTATCGAGAATGAAATAC GGAGCCCTTGTCGACAAAACTTCTGTTTGCAGTATGTGATGGTGGAGCTG TGCCAGTGTAGCTGATGGGTGCTCTGGTTGTCTCCTTCTTGTTGTTGTTG AGAGAAAGTGTAACTCTCAGTTGTTTTCTTGTTTTAGGATTATGGCAAAT CAAAAGTCATCTCCTGCAACATACTTAGATTTTTCGGAAATCAAGACCTA TACTTTGAATACCACCGAGTTTATGAAAACAACTCGGCGGTATTCGAAAT AAATCCTTGTATCTAGGTCTCAACCCGAGAGATTATCTTAGTCTTTGATC CGAGACAACAAAGTCTCCCGAACAATCAGTGGGAGATCGTCTTTTATATA TCATATAAATATGATATTAAAACAGTTTCAAAAAAACAAATCGCTCTGAA AACGTGCCAGCCGTCTATATAAAGGCTTGAATACACCTAGTATAATACTA GATCGCTGTGTAGAAAAGTGTGAAATAATACTTTCTGCCTCATCACTGGC CACGCCATTTCAACAATATTCTACAAAAATCAGTTAAAAAACACGCACGT AGTGTCGGGCTTGAAAAATGATCGGAAATATCAGTGTATTTTGTTTGAAA TCGTTGTTGTTTTGTGTCAAACTAAAATTTCTTCGTGAATTCATCGAAAG TAGAAGAAAACAAGCTGCCATTGGATTCACCTGCAAGCTGCTGGACGGGC GAGGGCGTGGTATGGCTCGCACCTTGACACCAGAGTTTGATGACCCCTCT GCCCCAAAACCTTGGAGATCAGCTCGGCTGGCTGCAGCACGCCCACAGCA CCTTCATCAACTGAGACGAGTTCATCTTCCGCCCAACTCCCTGGAGCAAC TTTCAAAAGATGCCATGGAGCTAGAATTTCGGGCATATGGAATGATTTAA GGCACTCCGCTCTCCAACAGCAGCATGTACAAGTATACCTTCCTCTTAGA AGACAACTGTACACACATGAAATGAACGATAATGGGTAGAGGCAGCAACA GTTACAACAAGCATTTTTTGTCATGCTAAAACACACAGAAAAAAAAAAAA AGTAAATGCAATAAAAAGTTGATCAGCATAAAACTTGAAGTTTCAATTCA TAAATTGAACTGCGACTCGAAATTCCTCAACTACCCTGCGCAGATTATTT CTCGTTCGCGCAGGCAATTTTTCAATTCAGCGAGGATATCCCGACGGTGA TCAATCACCGCCGGTAAGGGTGGCTCGATTACTTTTCGGGGTCCGTCGGT GAAATACCCTGAGTGGTTCTGAGGATTACCGTAATATATTCTCAAGTGAA ATTTCCAGGACGATCAATTCCTTTCTACCACCACCACAATGAATTGATTT TTTATACACTCCGGGGCACGTTGTCGTTGTGCGGAGGGGAGAAGTTGTTC AGCGAAGAAGGAGAAGTTACAGTTGTTTTTTTTTTTTGATTGGCGGATAT CGTCCGAAGACGACGATATCCGCCAATCAGAAAATATTGAAACTCCTCTT TTCTGCTTCGTACCACCACCAATTTAATTCAAATTTAATTCAGTCTCTGT CCTACTACCAGGAACTCTAGCGCAGCCTATACTCGTCGTACACTCGTGCT CAATGATAAGCAGGGACAAGGATGATCAGGGAGAGTAGGGGGAGCATGGG CAAGAGGCTATGAAAACTTTCCCAAACTCATCTTACTCTTCTCTCATCAC GAGACACAACCGGAGCATGAGTGCAGCAAAATACCATTGAAAACTTAAAG AATGGTCTATTCGGGGTCAAATTTGATGGAGAATCCGCAGAGTTGTTATG GTGCAGCAAAGCTCAAGGGCATGGGCTTTTTCAAAACAGGTGCGATTTCG GGTCGTTTCGCGACCTTTTTTTGGGTGCGGTGCAACAGCCGTATTCACAA ATAGCAGGAGTATCATAGCAGAGTAAGGAGTCCCACGACAAGCATGATGT AAAGACTGTATACGTAGGCTCCCAACTCAAATGATGGTTGACGGTCTCTT CTTCAAAGTGAAGAAAAGAAAAAACATGGTATTCTCCTCTATCTTGTTGA CTACTATTATTCCGAATTCCTGCGCTGCCTTTGGATTGACGTCATTCGCC GATCCACCGAAATATAAACAAAATTTGGAAAAAAAAAAATGTAACACCGA ACTTTTTTGTCTTTCTCGGCGAAGGTGCAAGTCAGTCTGACACTTGCAGT ATAAATCGGCTGAAAGGTTAAATACAAGATTTGACATAAACAAGTTATTT CTAGCATACCACGTGGCTGGCCGTCATCAACATGCCTTGTCAGCAATAAT AAGATGGCGCTCTTCTTGAGTGCTAGTGCCCCTCAAGGGTATAAGCCGCC GTTGTTTACAATGGTAGCCACAAATCTCCTGTGCAGTATTAAACAACAAC TGATGCGTGACGAGAATCATCCGGGCTTGTCATGGGGTTTCATCAAGCGG GTACGGGATTTTCACTCCCCTTCTCGTGGTAGTATGGAGTGGGCCAGATT TCTGGTCCCATGTCTGCCTTTGCAGATCCGGAATCTACCAAAAAACGGTT GAGCTTTGCTTTGGAACGACAACAGTTCACTTCATCAGAGTATAGATATA TTCTGTGTTTCACAGCCGGCACTTGTTGGTTGCGATGATGATGCTCAGAT CAGTGGTGAACATGAAGAAGCAGGAGAGCAGAGTGTTTCCTCAAGTCTGT AGCTGTTCTCAGTCAAACTGCAGGAATCATTGCAAAAAAGACAACGGCTG TTAGTAGTTTTTTCAGCTGCTGGTGGCTCTTTCTTTCTTTGTTGTGCAAT CCCACTTCTTCTCACTTTCATTTGGTTTAATCTTACTGACAAGGCGTGTT GACGAAGGCCAGCCACCGGCCTCGGCTGGTGGTATGCCAGAAACAACGCT GTCCACGCCAGATCTTGTAATGATTTAAAAACCTTTGATATGTTGCCTCT TTGGCAATGTAGAGCTGTACTCGCTGACGCCCTTTTCGAGCTTGGGATGT CGGGTTGTCGGGTTGTCGGGTTGTCGAATTAATTTCATTGATATAGGTCC GGGAGCCAGTGTTTTGAGGGATGTCGAGGTTCGAATCGACAACCCGACAT CCCGCTGCCGGGATGTCGAATTGCTTGGGATGTCGAATTAATTTGAATTA TATGTATATGGGAGCCAAGTAAAAAAATGTGTTGTTCTGGCCGAAGTAAA AAAAAAACATGATCCGAGTTTTCTCGCCTAGTCTTGGATACAGACGCATT GCGTCAATATGTTGGATACGAACATGGAGAGAAACTATTATTGTGGTCGT TGACCAATCACGTGTTAAATGGATTTGGAGAGAAATTTCAAACAAACGGT AAAGTCCGAATTCCGGATGAAAAGTGTTCATATATTTTCCGAGGGCGCTC TACTTTATCTCTTCTTTGTCAAAACGAGTGTCCATATGAAGTACCTCATG CTGTACTTTCGTTTGTATCCTCAACAAAGCAAACTCGACAACCCGACAAC CCGACAACCCGACAACCCAAGCTCGAAAAGGGTGTGATAATGGAAGCGGC CTCACTGTTCACCTGAAACCCAACACCTCAACACCGCAACAACAACAATA ATAATAATAAACTTAAATCAATTAATTAAAATACAAGGGGGAACAAAATC TCGAGCTGCATTTTTTTTTAATATTCCTCCGCACGTATCTTTCTGCAAAG TAATAACGTCGCCGGGGCGGGGGCAGGAGGACTACGGCGTGAAGGGCGCG CCGGAGGACCACGAGCCCCCGGCCCGGTGCCCCATCTTCTACGACTTCAA GCAGTCGGACCACCACGACCCCCTGCTGCTGGTGTGGAACTCGTGACGGC CGCCGCCGCTGCTGCCGCCGCCGGGCCTCCGGGCCTC
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig81:470393..482629-

>mRNA_H-akashiwo_Contig81.10.1 ID=mRNA_H-akashiwo_Contig81.10.1|Name=mRNA_H-akashiwo_Contig81.10.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=447bp|location=Sequence derived from alignment at H-akashiwo_Contig81:470393..482629- (Heterosigma akashiwo CCMP452)
ATGGGTGGTAAAAAAAAGGCCGTAAAGAAAGGAGGGGCCAAAAAGAAGAA
GTCCTCCAAATCCGCGACAGATGAAGAAAAGCAACAAGTAGTTGACCAGA
ATATGCCAGCTTTTGTTTTGGCACCTGACTTAGAGGAGTGGGTCACTCTG
CAGCTCAATTTACTAAACTGGAGCTACATGAACACAGAATACAGAGTGAA
GACATCGACACACATCTTCAGGATAAAGAACTACTTAAAAGAAAGGCATG
GAAGGATCGAGGAGCTCATCATATGCAAGGATTCTTTCAGTGAGGCGAAT
GAAATGGCTGATGAAATGAAAACACTGGAGGACTACGGCGTGAAGGGCGC
GCCGGAGGACCACGAGCCCCCGGCCCGGTGCCCCATCTTCTACGACTTCA
AGCAGTCGGACCACCACGACCCCCTGCTGCTGGTGTGGAACTCGTGA
back to top