mRNA_H-akashiwo_Contig806.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig806.2.1
Unique NamemRNA_H-akashiwo_Contig806.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig806.2.1 vs. uniprot
Match: A0A7S4DDY8_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDY8_HETAK)

HSP 1 Score: 274 bits (701), Expect = 9.210e-92
Identity = 129/139 (92.81%), Postives = 132/139 (94.96%), Query Frame = 1
Query:   13 WGRMPLYEECAERGQHVPIEHLAPTDKVAFISHRWQDAAKNLADDAARSQYRVIMAYLLGSEEGQSVSYVWLDLACINQDCRRPESLVEFYIKLDNIGTAIACSHTVLVVPRLEQQQVDGHCLYYSDLEEYTKRGWCLL 429
            W RMPLYEECAERGQHVPIEHLA TDKVAFISHRWQDAA NLADDAA SQY+VIMAYLLGSEEGQSV+YVWLDLACINQD  RPESL EFYIKLDNIGTAIACSHTVLVVPRL+QQQVDGHCLYYSDLEEYTKRGWCLL
Sbjct:    1 WERMPLYEECAERGQHVPIEHLAATDKVAFISHRWQDAANNLADDAACSQYQVIMAYLLGSEEGQSVAYVWLDLACINQDRSRPESLKEFYIKLDNIGTAIACSHTVLVVPRLKQQQVDGHCLYYSDLEEYTKRGWCLL 139          
BLAST of mRNA_H-akashiwo_Contig806.2.1 vs. uniprot
Match: A0A6V1VGB7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VGB7_HETAK)

HSP 1 Score: 161 bits (407), Expect = 9.600e-44
Identity = 80/147 (54.42%), Postives = 106/147 (72.11%), Query Frame = 1
Query:    1 DLKAWGRMPLYEECAERGQHVPIEHLAPTDKVAFISHRWQDAAKNL-----ADDAARSQYRVIMAYLLGSEEGQSVSYVWLDLACINQDCRRPESLVEFYIKLDNIGTAIACSHTVLVVPRLEQQQVDGHCLYYSDLEEYTKRGWCL 426
            D  A GRM L+E+CA   QHV I++L    KV F+SHRWQ  +++      ADD    Q++V+ A+L  S+EG+ +++VWLDL+CINQD    + L +F +KLDNIGTAIACSH VLVVPRLEQ  V+G  LY+S+L+EYT+RGWCL
Sbjct:   46 DFLASGRMVLFEKCAAGNQHVVIKNLGAQHKVLFVSHRWQVLSEDCSRAVKADDDVNVQFQVVKAFL-ESQEGRQITHVWLDLSCINQDRGTADGLKQFLLKLDNIGTAIACSHLVLVVPRLEQ--VEGQPLYFSNLQEYTERGWCL 189          
BLAST of mRNA_H-akashiwo_Contig806.2.1 vs. uniprot
Match: A0A7S4DE81_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DE81_HETAK)

HSP 1 Score: 134 bits (336), Expect = 4.590e-37
Identity = 61/82 (74.39%), Postives = 69/82 (84.15%), Query Frame = 1
Query:    1 DLKAWGRMPLYEECAERGQHVPIEHLAPTDKVAFISHRWQDAAKNLADDAARSQYRVIMAYLLGSEEGQSVSYVWLDLACIN 246
            DLKAWGRMP YEECA R QHV ++ LA  DKV F+SHRWQDA  NLADD A SQY+VIMAYLLG +EGQS+++VWLDLACIN
Sbjct:   99 DLKAWGRMPYYEECAGRAQHVLMKDLALNDKVLFVSHRWQDAPNNLADDDACSQYQVIMAYLLGCKEGQSITHVWLDLACIN 180          
BLAST of mRNA_H-akashiwo_Contig806.2.1 vs. uniprot
Match: A0A7S3YE75_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YE75_HETAK)

HSP 1 Score: 123 bits (309), Expect = 1.010e-32
Identity = 69/165 (41.82%), Postives = 82/165 (49.70%), Query Frame = 1
Query:   31 YEECAERGQHVPIEHLAPTDKVAFISHRWQDAAKNLADDAARSQYRVIMAYLLGSEEGQSVSYVWLDLACINQDCRRPESLVEFYIKLDNIGTAIACSHTVLVVPRLE--------------------------------QQQVDGHCLYYSDLEEYTKRGWCLL 429
            YEE   RG HVP   L P   + F+SHRWQDA  N  D   R QYRV+  +L  S +GQ  ++VW D  CINQ+    E L  F  KLDNI TAI  S T+LVVPR+E                                Q + DG    +SDL EYT RGWCL+
Sbjct:    3 YEEVERRGWHVPATALLPGAHLLFVSHRWQDAYGNQPDSPDRLQYRVVQTFLETSPDGQRATHVWYDFGCINQERATTEGLTAFLQKLDNIPTAIFLSQTILVVPRIENASTWLAQKKAKEGEKKKKTKTMRASKLVNEEQARADG---IFSDLYEYTARGWCLM 164          
BLAST of mRNA_H-akashiwo_Contig806.2.1 vs. uniprot
Match: A0A7S3Y9N2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y9N2_HETAK)

HSP 1 Score: 102 bits (254), Expect = 2.260e-25
Identity = 48/71 (67.61%), Postives = 57/71 (80.28%), Query Frame = 1
Query:    1 DLKAWGRMPLYEECAERGQHVPIEHLAPTDKVAFISHRWQDAAKNLADDAARSQYRVIMAYLLGSEEGQSV 213
            +LKAWGRMP +EECAERGQHV ++ L  +D+ AFISHRWQDAA N ADDAA SQY+V M +L  SEEG +V
Sbjct:   54 NLKAWGRMPFFEECAERGQHVLMKDLTQSDQAAFISHRWQDAANNFADDAAASQYQVAMEFLR-SEEGLTV 123          
BLAST of mRNA_H-akashiwo_Contig806.2.1 vs. uniprot
Match: A0A7S3Y8E1_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8E1_HETAK)

HSP 1 Score: 95.5 bits (236), Expect = 3.020e-22
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 1
Query:  280 FYIKLDNIGTAIACSHTVLVVPRL-EQQQVDGHCLYYSDLEEYTKRGWCLL 429
            F +KLDNIGTAIACSHTVLVVPRL +QQQVDG  LYYSDLEEYTKRGWCLL
Sbjct:    1 FLVKLDNIGTAIACSHTVLVVPRLIKQQQVDGQSLYYSDLEEYTKRGWCLL 51          
BLAST of mRNA_H-akashiwo_Contig806.2.1 vs. uniprot
Match: A0A7S2XXC9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXC9_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.140e-15
Identity = 44/117 (37.61%), Postives = 66/117 (56.41%), Query Frame = 1
Query:   88 DKVAFISHRWQDAAKNLADDAARSQYRVIMAYLLGSEEGQSVSYVWLDLACINQDCRRPESLVEFYIKLDNIGTAIACSHTVLVVPRLE---QQQVDGHCLYYSDLEEYTKRGWCLL 429
            ++V F+SHRW   A     D A  Q+ +   +L  ++ G+SV++VWLD +CI QD       + F   L+N+ TAIAC+  VL++PR+E       DG  +  +DL +Y  R WC L
Sbjct:    4 NRVLFVSHRW---ATEDEPDPAGDQFALARRFLEDTDAGRSVTHVWLDYSCIQQD----RGALGFRAYLENVPTAIACADVVLLLPRVEYLPHTTRDGVRVAATDLNDYLGRAWCTL 113          
BLAST of mRNA_H-akashiwo_Contig806.2.1 vs. uniprot
Match: A0A7S3Y8C5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8C5_HETAK)

HSP 1 Score: 79.0 bits (193), Expect = 8.380e-15
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 1
Query:  286 IKLDNIGTAIACSHTVLVVPRLEQQQVDGHCLYYSDLEEYTKRGWCL 426
            +KLDNIGTAI CSH V+VVPRLEQQQ  G  LY+SDL+EYT+RGWCL
Sbjct:    2 VKLDNIGTAITCSHVVVVVPRLEQQQ-GGKPLYFSDLKEYTERGWCL 47          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig806.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A7S4DDY8_HETAK9.210e-9292.81Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A6V1VGB7_HETAK9.600e-4454.42Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4DE81_HETAK4.590e-3774.39Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3YE75_HETAK1.010e-3241.82Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3Y9N2_HETAK2.260e-2567.61Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3Y8E1_HETAK3.020e-2288.24Hypothetical protein (Fragment) n=3 Tax=Heterosigm... [more]
A0A7S2XXC9_9STRA2.140e-1537.61Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3Y8C5_HETAK8.380e-1576.60Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig806contigH-akashiwo_Contig806:150446..150874 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size429
Hectar predicted targeting categoryother localisation
Exons1
Cds size408
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387991.1230252-UTR-H-akashiwo_Contig806:150445..1504661681387991.1230252-UTR-H-akashiwo_Contig806:150445..150466Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig806 150446..150466 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387991.13176-CDS-H-akashiwo_Contig806:150466..1508741681387991.13176-CDS-H-akashiwo_Contig806:150466..150874Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig806 150467..150874 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig806.2.1prot_H-akashiwo_Contig806.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig806 150467..150874 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig806.2.1

>prot_H-akashiwo_Contig806.2.1 ID=prot_H-akashiwo_Contig806.2.1|Name=mRNA_H-akashiwo_Contig806.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=136bp
MPLYEECAERGQHVPIEHLAPTDKVAFISHRWQDAAKNLADDAARSQYRV
IMAYLLGSEEGQSVSYVWLDLACINQDCRRPESLVEFYIKLDNIGTAIAC
SHTVLVVPRLEQQQVDGHCLYYSDLEEYTKRGWCLL
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mRNA from alignment at H-akashiwo_Contig806:150446..150874+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig806.2.1 ID=mRNA_H-akashiwo_Contig806.2.1|Name=mRNA_H-akashiwo_Contig806.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=429bp|location=Sequence derived from alignment at H-akashiwo_Contig806:150446..150874+ (Heterosigma akashiwo CCMP452)
GACTTGAAGGCTTGGGGGCGCATGCCTCTATATGAAGAGTGCGCGGAGCG GGGCCAACACGTGCCCATTGAACACTTGGCTCCGACCGACAAGGTCGCGT TCATCTCCCACCGCTGGCAGGACGCGGCCAAAAACTTGGCAGATGACGCT GCCCGCTCTCAGTACCGAGTCATCATGGCCTACCTGCTGGGCAGCGAAGA AGGTCAAAGTGTCTCCTACGTGTGGCTCGACTTGGCCTGCATCAACCAGG ACTGCCGCCGTCCTGAGAGCCTGGTTGAGTTTTACATAAAACTCGACAAC ATTGGGACGGCCATTGCGTGCTCGCACACGGTCCTTGTCGTCCCGCGCCT CGAGCAGCAGCAGGTGGATGGCCATTGTCTGTATTACTCGGACCTTGAGG AGTACACGAAGAGGGGCTGGTGCCTCTTA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig806:150446..150874+

>mRNA_H-akashiwo_Contig806.2.1 ID=mRNA_H-akashiwo_Contig806.2.1|Name=mRNA_H-akashiwo_Contig806.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=408bp|location=Sequence derived from alignment at H-akashiwo_Contig806:150446..150874+ (Heterosigma akashiwo CCMP452)
ATGCCTCTATATGAAGAGTGCGCGGAGCGGGGCCAACACGTGCCCATTGA
ACACTTGGCTCCGACCGACAAGGTCGCGTTCATCTCCCACCGCTGGCAGG
ACGCGGCCAAAAACTTGGCAGATGACGCTGCCCGCTCTCAGTACCGAGTC
ATCATGGCCTACCTGCTGGGCAGCGAAGAAGGTCAAAGTGTCTCCTACGT
GTGGCTCGACTTGGCCTGCATCAACCAGGACTGCCGCCGTCCTGAGAGCC
TGGTTGAGTTTTACATAAAACTCGACAACATTGGGACGGCCATTGCGTGC
TCGCACACGGTCCTTGTCGTCCCGCGCCTCGAGCAGCAGCAGGTGGATGG
CCATTGTCTGTATTACTCGGACCTTGAGGAGTACACGAAGAGGGGCTGGT
GCCTCTTA
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