mRNA_H-akashiwo_Contig80.9.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig80.9.1
Unique NamemRNA_H-akashiwo_Contig80.9.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig80.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig80contigH-akashiwo_Contig80:477647..479621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size219
Hectar predicted targeting categoryother localisation
Exons2
Cds size219
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387987.3869593-CDS-H-akashiwo_Contig80:477646..4777721681387987.3869593-CDS-H-akashiwo_Contig80:477646..477772Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig80 477647..477772 -
1681387987.3968396-CDS-H-akashiwo_Contig80:479528..4796211681387987.3968396-CDS-H-akashiwo_Contig80:479528..479621Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig80 479529..479621 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig80.9.1prot_H-akashiwo_Contig80.9.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig80 477647..479621 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig80.9.1

>prot_H-akashiwo_Contig80.9.1 ID=prot_H-akashiwo_Contig80.9.1|Name=mRNA_H-akashiwo_Contig80.9.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=73bp
QTASAVSIECKKEVRQFFKEAMQDPLDYLPELEACDQEIDKYCKMNQGPF
VMACLKRSSKRLGDRCKAVVSI*
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mRNA from alignment at H-akashiwo_Contig80:477647..479621-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig80.9.1 ID=mRNA_H-akashiwo_Contig80.9.1|Name=mRNA_H-akashiwo_Contig80.9.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1975bp|location=Sequence derived from alignment at H-akashiwo_Contig80:477647..479621- (Heterosigma akashiwo CCMP452)
CAGACCGCCTCGGCAGTAAGTATCGAGTGCAAAAAGGAGGTTCGGCAGTT
TTTCAAGGAGGCCATGCAAGACCCACTCGACTACCTTCCCGAGGTAGGTG
GAGAGAAGCTCACCATTCTTTACCTGCATGAAGGGTGAACAGATAGAAGC
GCAAAGAAAGGTACATACGTGTGAGTTCAAAGGGATTGTTGAGGGGTCAA
TTAAAGTGCGCAGTAGATTAGAGGTTGTCGGGAAGAGTCATTTAAGAGGA
TGAGGAGTCAATTACAGTGCGCAGTAGATTAGAGGTTGTCGGGAAGAGTC
GTTTGAGAGGCATGATTCAAGCCCCCCCTCATCTCAGCTTGTATTGTCAA
TCAATATTATAATATGGGTAGTGATCCTTGTATATACAAATGGATTGTGG
AGAACCCAACCTATCAGACTTCCATCAAACATAAGGCTCCGGATGGCCTC
TCTTCGTCACCAATCTCGACAGCAACTTCCCTGGTCAGTCTGGAAAGACT
CTATGTACTATATTTTCCAAGTCGAACATGGAGCCGCCCATCTTTCCCGA
ATCGCCATCGGGACATCCGTGTTTTCGTCCTCTGAAGACACACTCGTGCA
CATATGTACAGCGCTGTGCTCTCAAGCTTCTTCAGAAGCCAGAACTAGTT
GACCCCCACCTCTACTGTCACTTGAAAGTAGGAGACAGGCTGCTTTGGTA
GGTCTTGCGTGTAAACTGCTAGGTGGCAATGGACATCATGGATTGCTAAA
CGAGCTCATGCCTGATTTTGTAGGGACCCCACATAGCCACCTTCTCCCAT
TACAACCGCCGTTGCCCGGATTGCAGCACGGACAAGGGGACCACCACAGC
ACCTGCATCAGCTGCAGCATGCTATTGTGTCACAGAGCTGGACCTCACTC
TCTTGATAGAGATCGTTCAGGGTCAGGCTTCCAAAAAATGGAACAATCTA
ATCACTATATGTACATACTTCAACGACTATACACATATAGAAGAATTCAT
GCCGATTAGGAAGTAGCTTCAAAATCAGGTAAAGTTGGATGGTAGCAGCA
GTGGATAAGTTCTGGGTTATCATTTTCACTTCATGTTCAAACGTTGTTGC
AATGGCATTCGGCAAGTCCGCTTAGCACAGTTCACAGTAGCAGCAGCTCG
CAGCAGCAGTACCACGGCCCGCAGCAGTAGTACCGTGGCCCGCCGCAACC
CGCTACGATGAACCTGTGTTTCGTCGGTTTAGCTTGAGAAGAAGTGGAGG
TTGGAAACTAGAGACACAACAACAACACCTGTACTCTGTATAACAATCCC
ACTATAATGCAATTAGGGGTATCCGAAATTCCCGTTTGGGAAAAGTGCCA
TTTTTGTGGGAAAAATAGGATTTTTGGGGGAAAAGATCCGTCCTCTACAC
TTCTTCTTCTTCTCTTTTTGAAATTGGGAACAGAAGAGAAGAGAAAGAAG
TGTAAAGCATAAACAATACAAAACTGATGGGAAAAGTCACGGGAAATGAA
CGATTTTGGTGGGAATTTTCCGGGAAAAGCATCATTTCAAAAATTCCCAT
TTTCCCGCTCCAAAACGGGAAATTTCAAAATTTAGGTGGGAATTTCGGAT
ACCCCTAAATGCAATGGACAACTAGATAGAAATTGGTTGTTAGCCTTTCC
TGTGCTTCCATGTGGTTTCGAGCGTGCGGACCTGGCAGATTGTGATTATC
GCCTTTTTTGCTGGGTGTGATTCTTGTCACTGGACCACAGAGGAATTCTT
GATCGTGTAAAGGCTGGTAGAGTAGGGCAAAAGCCTGCCAAGCCCCTCCT
TTTATGACACTGCGCTCCACATTTCATTAAACCTCTGTCCTGTTCTCAGC
TGGAGGCCTGCGACCAAGAGATCGACAAGTACTGCAAGATGAACCAGGGA
CCCTTTGTAATGGCCTGCCTCAAAAGGAGCAGCAAACGCCTGGGCGACAG
GTGCAAGGCAGTGGTGAGTATATAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig80:477647..479621-

>mRNA_H-akashiwo_Contig80.9.1 ID=mRNA_H-akashiwo_Contig80.9.1|Name=mRNA_H-akashiwo_Contig80.9.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=219bp|location=Sequence derived from alignment at H-akashiwo_Contig80:477647..479621- (Heterosigma akashiwo CCMP452)
CAGACCGCCTCGGCAGTAAGTATCGAGTGCAAAAAGGAGGTTCGGCAGTT
TTTCAAGGAGGCCATGCAAGACCCACTCGACTACCTTCCCGAGCTGGAGG
CCTGCGACCAAGAGATCGACAAGTACTGCAAGATGAACCAGGGACCCTTT
GTAATGGCCTGCCTCAAAAGGAGCAGCAAACGCCTGGGCGACAGGTGCAA
GGCAGTGGTGAGTATATAA
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