mRNA_H-akashiwo_Contig80.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig80.7.1
Unique NamemRNA_H-akashiwo_Contig80.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig80.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig80contigH-akashiwo_Contig80:417151..417850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size150
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size150
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387987.3129957-CDS-H-akashiwo_Contig80:417150..4172441681387987.3129957-CDS-H-akashiwo_Contig80:417150..417244Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig80 417151..417244 -
1681387987.3226264-CDS-H-akashiwo_Contig80:417794..4178501681387987.3226264-CDS-H-akashiwo_Contig80:417794..417850Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig80 417795..417850 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig80.7.1prot_H-akashiwo_Contig80.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig80 417151..417850 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig80.7.1

>prot_H-akashiwo_Contig80.7.1 ID=prot_H-akashiwo_Contig80.7.1|Name=mRNA_H-akashiwo_Contig80.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=50bp
PAPRSCAPCAWTCPTSPGRSCAAWRTTCGGRACPTPARPPCVPSPRSSRR
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mRNA from alignment at H-akashiwo_Contig80:417151..417850-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig80.7.1 ID=mRNA_H-akashiwo_Contig80.7.1|Name=mRNA_H-akashiwo_Contig80.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=700bp|location=Sequence derived from alignment at H-akashiwo_Contig80:417151..417850- (Heterosigma akashiwo CCMP452)
CCTGCGCCAAGGAGCTGCGCACCGTGTGCGTGGACGTGCCCAACGAGCCC
GGGGAGGTGCTTCTCCCCCTCCTGCGCCCCCCATTGACCCGCCTGGGCCG
TCCTCCCTCTGCCCCCACGGACCTCCTTCTGCCCAACCACCCTCGACTCT
ACTGCGCCTTGGGTTTGCGTTCGCACGCACCCTTCTGAAACCAACCGAGG
AGGAAAAGGGTTGGGGGGGTGGAAAGAGGGGGGGGCACCTCTCTCTCCCC
GAACTTTCTGGAGGAGAGACTGCGCCAGGCTAGCGTCGCCGCAGGGCCTT
CGCGAGGCCCCCTGCTGCCCCCCCCCGCCCTTCCTCCTTCTGTGGCTGCC
CCACCCCCGGGGCCCTTTCCCGACCTTGCTCCCTGTACCCGCACATGCCC
TTAGCCGTGTGCTTGGGAACGGGTGGGAGTGGGCGTGCGAGCACGACGAT
CCGGAGAAGCCCTCGCCGGCTACCGTACGACGGGGGGTGCGCAAGACGGC
GGCTGCCGAAAGCAGCACAGGCCCGGGAGGGGGAGGGAGGGAGAGGGGTG
CGCGCGCCGCCCACTTATCGTCTCGACCTCCATTCCCCCGGGGGGTTGCC
CCCCAGGTCATGCGCTGCCTGGAGGACCACGTGTGGGGGGAGGGCATGTC
CAACGCCTGCGCGGCCGCCGTGCGTCCCATCACCAAGATCAAGCAGAAGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig80:417151..417850-

>mRNA_H-akashiwo_Contig80.7.1 ID=mRNA_H-akashiwo_Contig80.7.1|Name=mRNA_H-akashiwo_Contig80.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=150bp|location=Sequence derived from alignment at H-akashiwo_Contig80:417151..417850- (Heterosigma akashiwo CCMP452)
CCTGCGCCAAGGAGCTGCGCACCGTGTGCGTGGACGTGCCCAACGAGCCC
GGGGAGGTCATGCGCTGCCTGGAGGACCACGTGTGGGGGGAGGGCATGTC
CAACGCCTGCGCGGCCGCCGTGCGTCCCATCACCAAGATCAAGCAGAAGG
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