mRNA_H-akashiwo_Contig80.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig80.5.1
Unique NamemRNA_H-akashiwo_Contig80.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig80.5.1 vs. uniprot
Match: A0A7S3UVH7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVH7_HETAK)

HSP 1 Score: 161 bits (408), Expect = 4.050e-46
Identity = 77/80 (96.25%), Postives = 78/80 (97.50%), Query Frame = 1 
Query:    1 EALNERGAVDLQLSPFLNQHCSSTLQIFFAQHMCPAGGKNKPTLTEDGARELSCLTQNYEAINAPVCRGRVFQTMKTMVL 240
            EALNERGAVDLQLSPFLNQHCSSTLQIFFAQHMCPA  +NKPTLTEDGARELSCLTQNYEAINAPVCRGRVFQTMKTMVL
Sbjct:  197 EALNERGAVDLQLSPFLNQHCSSTLQIFFAQHMCPAARENKPTLTEDGARELSCLTQNYEAINAPVCRGRVFQTMKTMVL 276
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig80.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3UVH7_HETAK4.050e-4696.25Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig80contigH-akashiwo_Contig80:401125..405344 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size244
Hectar predicted targeting categoryother localisation
Exons3
Cds size240
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387987.1928663-CDS-H-akashiwo_Contig80:401126..4011471681387987.1928663-CDS-H-akashiwo_Contig80:401126..401147Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig80 401127..401147 -
1681387987.2043474-CDS-H-akashiwo_Contig80:404367..4044881681387987.2043474-CDS-H-akashiwo_Contig80:404367..404488Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig80 404368..404488 -
1681387987.213778-CDS-H-akashiwo_Contig80:405246..4053441681387987.213778-CDS-H-akashiwo_Contig80:405246..405344Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig80 405247..405344 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig80.5.1prot_H-akashiwo_Contig80.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig80 401127..405344 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig80.5.1

>prot_H-akashiwo_Contig80.5.1 ID=prot_H-akashiwo_Contig80.5.1|Name=mRNA_H-akashiwo_Contig80.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=80bp
EALNERGAVDLQLSPFLNQHCSSTLQIFFAQHMCPAGGKNKPTLTEDGAR
ELSCLTQNYEAINAPVCRGRVFQTMKTMVL
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mRNA from alignment at H-akashiwo_Contig80:401125..405344-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig80.5.1 ID=mRNA_H-akashiwo_Contig80.5.1|Name=mRNA_H-akashiwo_Contig80.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=4220bp|location=Sequence derived from alignment at H-akashiwo_Contig80:401125..405344- (Heterosigma akashiwo CCMP452)
GAGGCGCTGAATGAACGCGGGGCCGTGGATCTTCAGCTCTCTCCTTTCCT
GAACCAGCACTGCTCAAGCACCCTGCAGATTTTCTTTGCCCAGCACATGT
GGGTTCACTGGAATATATAACGATGGCCATATATATATTGTGAGGTGTTA
GATTTAACAGAAATGCTGCTTCCGTCATCAGTGAGTATAGCTAATATAGC
TAGCGCCGGGTTATTTGTGTGAATGTACCATGCGCTCAGCCGCTCCTCTT
TCAACCTGAGCCACAAGAATTATCTTTTTACATGCGCCATAGCATCTGGA
GACCTGATCAGACACTTTCTCCAACCTGCCAGAACCGCGTGGCGGCAGCT
GTCTCATACAACGTCATTTTGTTGAATTTAATTAAGATAATTATTATGTA
CAATTAAGATGTGATGAAAATATTGCGAAGGCCCGCCATTCGGTATTGCG
AAGCGCATACATGTGATGAAAATATTGTTTTCCCCCACTGCTTTTTCTGT
TTTGTGGAGGCAGATTATCTCCCTATTCGTCCGAATGACGACAATGTATT
TTTCTTGAGAAACCATCTTCTGGTTGATAGCTGAGTTTGTCTCACAACTG
TAATACGGGACGCGAGGTGCGCGAAATCCTGTCAAAACGGTCAACAATAG
ACGGCCGGACCCAGTACATGACTTCACCAAATATTGCTATCGTCATGCCT
CTAGGAATGTTTCCCATCAGGGTAAAGGTTCCGATCGAATGTTTCCAGGC
AGGTAAAGGTTTTGATTGAAACCCTCCGACTGCCCTTCCACCACCCCCCC
CCCCACCGCCCCCCCCCCCCCCCCCCCGGCCTCCCCATTCCCCGTCCTGG
AGTCAGGTGCCCCGCGGGCGGGAAAAACAAGCCCACGCTGACGGAGGACG
GGGCCCGGGAGCTGTCCTGCCTGACCCAAAACTACGAGGCCATCAACGCC
CCGGTCTGCAGGGGGCGCGTGTTTCAGGTGCCCCTCCCGGGTCTGGCCTT
GAAACAGGCTGCACTGTATGTTGTATTATTATTTGGAAAAAAATGATCAC
CGATGGATTGGAACAATTATTATGCTAATTTCTACCAAATGATAACCCCC
TCCTCCAGCTCCCGACGTTTCGACATGCAGTCATGCCTTCTTCACAGAGT
CACCAAGTTAGCCAAATCCAACCCAGTTCCGTCAAAGGCAATGAAGGCGG
TCTCCACAACAACAACACCAAGCAGCTGACAAGCCATCAAAAAATGCAGC
GGTCACGTTACCGCACCTCTCTTCTTCTCCCCTCCTCCTTCCACTGCGAA
GGAAAAAGGGGGGGGGGGGGGCGTCACTCAAGATTCACACCCTCATGTTC
CTTGTTGTTCCCGCCCACCCCTTCTTCTTGACTTCTTCTCTTCTACGCAT
GCAAGACTAATAGTAACCCTCTTTTGTGCCCAACGGTTTTCCAACGACAC
GCTCCCTTATATTATTATTTTTTTCTGTCTGGGACTTCTAGTCTTGAACG
AAGGGGACATTTTTGTAAAGTGCAGGTCTTTCACTCATCACTCCTCTCAT
CAACAAAAGAAGTGTAGTGTGAGTTTTATTGATGATTATAGAATGATGAC
CTGCACTCCAGCGCCTTCTATGATTTATGCATGTACTGTGCATTTATATA
TCATTACTTCCCATTGAGATGGAGCATGGCATAATCCAACAAAAAATTTA
ATGGTAACAGAAGAAGAAGAAGATTGTGCTGGTGATGATTGAAGAACATG
ATGGTAATTCTCCTACAGGTGGTGGAAGTATTGTGACCAATGAGGTTGTT
GAGAATGGAGAGTAGCCAATAGTGTACAGGAAGAAATTGTAGTAGTGCCG
GGAAGAAGGGCTGAGTTGTGAGAGGGAACCCCAGTGGTGCAGCAGCATAG
TATAGAATTTTGTATCACTTCTGATTAAATATGAATTCTTGGCAGTCCAA
AGGACCTCAGTCTAAACATGGTAATAGCAGCAGACGGGGGGATTTGTAAG
ACCGAGAGTGGTGCGTCGATGACCAGGGATGCCTGGGCTTCCTCTGTGGC
TGTCGTCAAGCGGGCTTGCTAGAGTTTCAATCAGGGTCCCCGAACTAGCG
AAAGCACCAGCGGTGTCCCTGCCGACTCTGAGGGTGAAAAGGAGTCCCAA
GGAGAAGGCAACGTGTGAGGGTAAAAAGGAGTCTGGAACACGGGGTGTTG
CTTATGGGTTGTTCGGGTATTGTCGTTGGTGGAGGAGAGCTTCTTCGCCG
TTCGAAGACGGGGGAAAGTTCGTGATACGGCGATTTGATTCCTGGGGATA
TTATTTCCGGTGAGCATTGCCGAGGACAGGTAGTGATCTAGGTGAAACAA
ATGGAGGAGGTGACAAAAAGGTGAAACAAATGGAGGAGGTGACAAAAAGG
TGGAGCCCTGTCTGTGGGGAATATCACATGACAACTGGAGAGAGGAGTGA
CAACTGGAGAAATGACAACTGGAGGAGTTTGGAGTGACAACTAGAGGAGT
GACAAAAGGAGGTGAGTGAAAAACAGCAGCTGACAGAGCAGCAAGTTTGG
AGTGACAAGCAGCCAGCATGGGCGGATGCCCAGCCAGCCATGGTATGGAA
GTACACACAGCACCTCCAATCACGGGGGGATGTTTTGCGGAGTGTGTGGT
TGATTTCCGGTGCAGGTGTGGGCAGGTGGGTGGAGCTGCGGTGCAGGTGG
AAGGAGCCCCGGAGTAGGTGGGCGGAGGAGCGAGATGCCGGTGGTAGAGC
AGTGTGCGCAGTACGGTGGATGAGAAGTAGGCGGTATTGCTGTGAGCATG
ACTAAACCGAAGAAGAAGAAGGTTGTGCTGGTGATGATTGAAGATGAGGA
GGAAGAACATTATGGTAATTCTCCTACAGGTGGTGGAAGTATTGTGACCA
ATGAGGTTGTTGAGAATGGAGAGTAGCCAATAGTGTAGTTGTAAGTACAG
GAAGAAATTGTAGTAGTGCCAGGAAGAAGGGCTGAGTTGTGAGAGGAAAA
CCCAGTAGTGCAGCAGCGTAGTATAGAATTTTGTATCACTTCTGATTAAA
TATGAACTCTTAGCAGTCCAAAGGACCTCAGTCTAAACATTTTATACTAG
TATATATGCAGTCGGAGCACAGGTCTTATTGGTGAGCAGGTGTCTTTCTT
GCAGTTTGCCGTCAAGTTTGAATTTTTGAAAAAGGAAAATTAAATATAAA
GGCAAGGGGCAAGCCAATGCTGTTGTGTGAGATGTAGTCTTCATTATCAG
CAAGCCATTCAAGATGCACTGATGTGATCAGTGGAGTCCATGAAACTATA
ATGGAATGCGCTGTCCCTATTTTTTAGGAGAGCTGTATAGTAGTGTAGAC
CATTCCCCCCCATATAAATATTAACGATAATATATTTAATTGTTGAGGTG
GTGGGTTTAAACAGTGAGGCCGCTTCCTTCATCAAAGAGTATAGCTCTAC
ATTGCCAAAAAGGCAACAATAATATATATATTTAAAAAAATATTAACTAT
ACATCTTTCTCAGTATATAATTATTACTTTTGGATATTCCTACTACTGCT
GAGACTTTTCATAGAGTCTGGATAGATAGACATGCCTCTATTGATTGTGC
AATGTTGGCTCCTTCATCATCCTCGTAGAAGCAGGTGGAGTTAAACAAAT
AATGGCTCATTCATTATATAAATAGCTATACTCTACAGTACACCAGCCCA
TCACTACAAAAGGCTCAAGTTTTGGCGAATGCCAAGCCTCTCCAGTTTTG
CTGGTTGGAGATGAGCTCTTAATCAACATGTTACTTTTGGTTTTTCCGCA
GGCTATTAGTGGTTACTGCAGCTCCTTGAGAAAAAACAATTCAAAATCCA
AAACTTGAAAAAGAAGAATAAGGCTTGATCCTGTTGTTCTCTCACCACTT
TGTACATAATTAGTGCTGGTTACTGCATGGTATCGCCACTTTTCTTCTCA
ATGAAATTTGCTTCTCCGATTGCTTCTCAAAGATGAGGTGGTGTGCACAA
ATCCAATCTCCAGAATTCAGCCGGCATTTGATCCATTTTGATCCCAGGAT
GATAGCCAAAGCCTGATATTGTAGCAGTGGTAGTACAAAAGGGTGGTGGT
TCTGGGTAGGGTCCTATAGGTGTGAGAAATAGCCCCCACCCCCCTCCCCT
CCCCCTGGTCGCCGCCCTCCTCTCTCTCCCCCCGCGGCCCGGCCCAGACC
ATGAAGACCATGGTGCTGGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig80:401125..405344-

>mRNA_H-akashiwo_Contig80.5.1 ID=mRNA_H-akashiwo_Contig80.5.1|Name=mRNA_H-akashiwo_Contig80.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=240bp|location=Sequence derived from alignment at H-akashiwo_Contig80:401125..405344- (Heterosigma akashiwo CCMP452)
GAGGCGCTGAATGAACGCGGGGCCGTGGATCTTCAGCTCTCTCCTTTCCT
GAACCAGCACTGCTCAAGCACCCTGCAGATTTTCTTTGCCCAGCACATGT
GCCCCGCGGGCGGGAAAAACAAGCCCACGCTGACGGAGGACGGGGCCCGG
GAGCTGTCCTGCCTGACCCAAAACTACGAGGCCATCAACGCCCCGGTCTG
CAGGGGGCGCGTGTTTCAGACCATGAAGACCATGGTGCTG
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