mRNA_H-akashiwo_Contig80.30.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig80.30.1
Unique NamemRNA_H-akashiwo_Contig80.30.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig80.30.1 vs. uniprot
Match: A0A7S3URX6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3URX6_HETAK)

HSP 1 Score: 431 bits (1109), Expect = 3.860e-149
Identity = 234/235 (99.57%), Postives = 234/235 (99.57%), Query Frame = 2 
Query:  230 MADHSLQSGRLTELLSQITSSGVVGPRDLIFGSQDGLCYETWMTGGRQNIFLASREGHWPLLKKFKDCGADLGSFYEDCIKWSPLVTAAEHGRWEAVQFLVSAQVPLDQKSEEGKTAVCAAAQNNHHNLALFLISKGASYGFPEKFPLLGAVEEGHIEMAQKLLALGHPVNEQNSYGLCPLMGAINHKGLKGQEHEVMLVKLXXXXXXXXXXXXXXXXXXXXLAVSKGKGRVGRV 934
            MADHSLQSGRLTELLSQITSSGVVGPRDLIFGSQDGLCYETWMTGGRQNIFLASREGHWPLLKKFKDCGADLGSFYEDCIKWSPLVTAAEHGRWEAVQFLVSAQVPLDQKSEEGKTAVCAAAQNNHHNLALFLISKGASYGFPEKFPLLGAVEEGHIEMAQKLLALGHPVNEQNSYGLCPLMGAINHKG KGQEHEVMLVKLXXXXXXXXXXXXXXXXXXXXLAVSKGKGRVGRV
Sbjct:    1 MADHSLQSGRLTELLSQITSSGVVGPRDLIFGSQDGLCYETWMTGGRQNIFLASREGHWPLLKKFKDCGADLGSFYEDCIKWSPLVTAAEHGRWEAVQFLVSAQVPLDQKSEEGKTAVCAAAQNNHHNLALFLISKGASYGFPEKFPLLGAVEEGHIEMAQKLLALGHPVNEQNSYGLCPLMGAINHKGPKGQEHEVMLVKLXXXXXXXXXXXXXXXXXXXXLAVSKGKGRVGRV 235
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig80.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3URX6_HETAK3.860e-14999.57Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig80contigH-akashiwo_Contig80:1420399..1421350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog38033.XP_001226325.1
PFAMsAnk_2
Model size952
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.87e-08
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota,38BVK@33154|Opisthokonta,3PN93@4751|Fungi,3R79M@4890|Ascomycota,21BTS@147550|Sordariomycetes,3UEIX@5139|Sordariales
DescriptionAnkyrin repeat
Cds size723
COG categoryM
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387988.653691-UTR-H-akashiwo_Contig80:1420398..14206271681387988.653691-UTR-H-akashiwo_Contig80:1420398..1420627Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig80 1420399..1420627 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387988.6651678-CDS-H-akashiwo_Contig80:1420627..14213501681387988.6651678-CDS-H-akashiwo_Contig80:1420627..1421350Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig80 1420628..1421350 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig80.30.1prot_H-akashiwo_Contig80.30.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig80 1420628..1421350 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig80.30.1

>prot_H-akashiwo_Contig80.30.1 ID=prot_H-akashiwo_Contig80.30.1|Name=mRNA_H-akashiwo_Contig80.30.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=241bp
MADHSLQSGRLTELLSQITSSGVVGPRDLIFGSQDGLCYETWMTGGRQNI
FLASREGHWPLLKKFKDCGADLGSFYEDCIKWSPLVTAAEHGRWEAVQFL
VSAQVPLDQKSEEGKTAVCAAAQNNHHNLALFLISKGASYGFPEKFPLLG
AVEEGHIEMAQKLLALGHPVNEQNSYGLCPLMGAINHKGLKGQEHEVMLV
KLLLAAGASVDVVDSAGISPLMLAVSKGKGRVGRVLLAAGA
back to top

mRNA from alignment at H-akashiwo_Contig80:1420399..1421350+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig80.30.1 ID=mRNA_H-akashiwo_Contig80.30.1|Name=mRNA_H-akashiwo_Contig80.30.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=952bp|location=Sequence derived from alignment at H-akashiwo_Contig80:1420399..1421350+ (Heterosigma akashiwo CCMP452)
CAGCTTTGGTCTTCCCGTTGACTGGTTGGGCTGTACGGTCCCATCCAATG
AGCAATCTCCCCTGCCGAAGCTTCAATCCCATCATCATGGCTTTGGTTAA
GCTGTCTCGGATGAAGCCTTGCCACTTTGTTGGAGAGTTTTGCATAAAAG
TTTAGGCTTTTCCCTCACGAAATACATTTGAATATAGATCACTTTTGTAA
ATATTACCTCTCAGCTTCTTGTGCATTCTATGGCTGATCATTCTCTTCAA
TCTGGTAGACTAACGGAACTACTGTCTCAGATCACATCGTCTGGGGTTGT
TGGCCCCCGTGATCTCATTTTTGGCTCTCAGGATGGCCTTTGCTATGAGA
CGTGGATGACAGGGGGGCGCCAAAATATTTTTCTAGCTTCGAGAGAAGGG
CACTGGCCACTTCTGAAAAAATTCAAGGACTGTGGCGCTGACCTTGGATC
CTTCTATGAAGACTGTATTAAGTGGAGCCCTTTGGTGACTGCAGCTGAAC
ACGGTCGTTGGGAGGCCGTCCAGTTTCTGGTTTCTGCCCAAGTGCCTCTG
GATCAAAAGTCCGAAGAGGGGAAGACAGCAGTCTGTGCTGCCGCCCAGAA
CAACCACCACAATCTTGCCCTGTTTCTCATCTCTAAAGGGGCATCTTACG
GCTTCCCTGAGAAATTCCCTCTCCTTGGCGCCGTTGAGGAAGGCCACATT
GAAATGGCCCAAAAACTTCTGGCCCTGGGGCACCCTGTCAATGAACAAAA
CAGCTATGGCCTTTGTCCTCTCATGGGTGCAATAAATCACAAGGGCCTTA
AGGGCCAAGAGCATGAAGTGATGCTGGTCAAGCTTCTCCTCGCAGCGGGC
GCCAGCGTGGATGTCGTGGATTCAGCGGGCATCTCACCCCTCATGCTGGC
GGTTTCAAAAGGCAAAGGTCGGGTGGGCAGGGTCCTCCTGGCAGCAGGGG
CG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig80:1420399..1421350+

>mRNA_H-akashiwo_Contig80.30.1 ID=mRNA_H-akashiwo_Contig80.30.1|Name=mRNA_H-akashiwo_Contig80.30.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=723bp|location=Sequence derived from alignment at H-akashiwo_Contig80:1420399..1421350+ (Heterosigma akashiwo CCMP452)
ATGGCTGATCATTCTCTTCAATCTGGTAGACTAACGGAACTACTGTCTCA
GATCACATCGTCTGGGGTTGTTGGCCCCCGTGATCTCATTTTTGGCTCTC
AGGATGGCCTTTGCTATGAGACGTGGATGACAGGGGGGCGCCAAAATATT
TTTCTAGCTTCGAGAGAAGGGCACTGGCCACTTCTGAAAAAATTCAAGGA
CTGTGGCGCTGACCTTGGATCCTTCTATGAAGACTGTATTAAGTGGAGCC
CTTTGGTGACTGCAGCTGAACACGGTCGTTGGGAGGCCGTCCAGTTTCTG
GTTTCTGCCCAAGTGCCTCTGGATCAAAAGTCCGAAGAGGGGAAGACAGC
AGTCTGTGCTGCCGCCCAGAACAACCACCACAATCTTGCCCTGTTTCTCA
TCTCTAAAGGGGCATCTTACGGCTTCCCTGAGAAATTCCCTCTCCTTGGC
GCCGTTGAGGAAGGCCACATTGAAATGGCCCAAAAACTTCTGGCCCTGGG
GCACCCTGTCAATGAACAAAACAGCTATGGCCTTTGTCCTCTCATGGGTG
CAATAAATCACAAGGGCCTTAAGGGCCAAGAGCATGAAGTGATGCTGGTC
AAGCTTCTCCTCGCAGCGGGCGCCAGCGTGGATGTCGTGGATTCAGCGGG
CATCTCACCCCTCATGCTGGCGGTTTCAAAAGGCAAAGGTCGGGTGGGCA
GGGTCCTCCTGGCAGCAGGGGCG
back to top