mRNA_H-akashiwo_Contig8.35.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig8.35.1
Unique NamemRNA_H-akashiwo_Contig8.35.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig8.35.1 vs. uniprot
Match: A0A7S4DDY2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDY2_HETAK)

HSP 1 Score: 236 bits (602), Expect = 1.740e-74
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = -3 
Query:    2 PHGPVHVLLGGALGCAEAWDAVEASGVDPSLVPHWRGNTFAYLKNAYRLELMECASTDGCYCLDYDSYLASAEAASNFLGAIGMTSIGDLTFAQAATIVDAVCNSGMVLGDNLQS 346
            PHGPVHVLLGGALGCAEAWDAVEASGVDPSLVPHWRGNTFAYLKNAYRLELMECASTDGCYCLDYDSYLASAEAASNFLGAIGMTSIGDLTFAQAATIVDAVCNSGMVLGDNLQS
Sbjct:  306 PHGPVHVLLGGALGCAEAWDAVEASGVDPSLVPHWRGNTFAYLKNAYRLELMECASTDGCYCLDYDSYLASAEAASNFLGAIGMTSIGDLTFAQAATIVDAVCNSGMVLGDNLQS 420
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BLAST of mRNA_H-akashiwo_Contig8.35.1 vs. uniprot
Match: A0A7S3XKX0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKX0_HETAK)

HSP 1 Score: 147 bits (372), Expect = 2.330e-39
Identity = 69/115 (60.00%), Postives = 83/115 (72.17%), Query Frame = -3 
Query:    2 PHGPVHVLLGGALGCAEAWDAVEASGVDPSLVPHWRGNTFAYLKNAYRLELMECASTDGCYCLDYDSYLASAEAASNFLGAIGMTSIGDLTFAQAATIVDAVCNSGMVLGDNLQS 346
            PHGPVH+LLGGALGC+ AWDAVEA+GVD   V  WRG  F+YLKN YR   +EC ST+GCYC  Y  Y+   + A+NFL  + M  + +LT  Q   +VDAVCNSG+VLGDNLQS
Sbjct:  391 PHGPVHILLGGALGCSAAWDAVEAAGVDQETVTRWRGLAFSYLKNGYRQGSIECTSTEGCYCPSYGIYMDHLDRATNFLSGLPMGGVSELTDDQLLAVVDAVCNSGIVLGDNLQS 505
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig8.35.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S4DDY2_HETAK1.740e-74100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3XKX0_HETAK2.330e-3960.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig8contigH-akashiwo_Contig8:1841934..1842281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size349
Hectar predicted targeting categoryother localisation
Exons1
Cds size348
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387982.0527678-CDS-H-akashiwo_Contig8:1841933..18422811681387982.0527678-CDS-H-akashiwo_Contig8:1841933..1842281Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig8 1841934..1842281 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig8.35.1prot_H-akashiwo_Contig8.35.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig8 1841934..1842281 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig8.35.1

>prot_H-akashiwo_Contig8.35.1 ID=prot_H-akashiwo_Contig8.35.1|Name=mRNA_H-akashiwo_Contig8.35.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=116bp
WTAGCRPAPCPSCTPRPRSSPPARTSGRRCWSSRWPPGSWRLPPRWPGRS
RSPGSSSRRWTHTPSAPAGRRSSGRRRCSPASAAPGWGPRPRPPPRPTPR
RTPGRRPAARARARAA
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mRNA from alignment at H-akashiwo_Contig8:1841934..1842281+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig8.35.1 ID=mRNA_H-akashiwo_Contig8.35.1|Name=mRNA_H-akashiwo_Contig8.35.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=348bp|location=Sequence derived from alignment at H-akashiwo_Contig8:1841934..1842281+ (Heterosigma akashiwo CCMP452)
TGGACTGCAGGTTGTCGCCCAGCACCATGCCCGAGTTGCACACCGCGTCC
ACGATCGTCGCCGCCTGCGCGAACGTCAGGTCGCCGATGCTGGTCATCCC
GATGGCCCCCAGGAAGTTGGAGGCTGCCTCCGCGCTGGCCAGGTAGGAGT
CGTAGTCCAGGCAGTAGCAGCCGTCGGTGGACGCACACTCCATCAGCTCC
AGCCGGTAGGCGTTCTTCAGGTAGGCGAAGGTGTTCCCCCGCCAGTGCGG
CACCAGGCTGGGGTCCACGCCCGAGGCCTCCACCGCGTCCCACGCCTCGG
CGCACCCCAGGGCGCCGCCCAGCAGCACGTGCACGGGCCCGTGCGGCT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig8:1841934..1842281+

>mRNA_H-akashiwo_Contig8.35.1 ID=mRNA_H-akashiwo_Contig8.35.1|Name=mRNA_H-akashiwo_Contig8.35.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=348bp|location=Sequence derived from alignment at H-akashiwo_Contig8:1841934..1842281+ (Heterosigma akashiwo CCMP452)
TGGACTGCAGGTTGTCGCCCAGCACCATGCCCGAGTTGCACACCGCGTCC
ACGATCGTCGCCGCCTGCGCGAACGTCAGGTCGCCGATGCTGGTCATCCC
GATGGCCCCCAGGAAGTTGGAGGCTGCCTCCGCGCTGGCCAGGTAGGAGT
CGTAGTCCAGGCAGTAGCAGCCGTCGGTGGACGCACACTCCATCAGCTCC
AGCCGGTAGGCGTTCTTCAGGTAGGCGAAGGTGTTCCCCCGCCAGTGCGG
CACCAGGCTGGGGTCCACGCCCGAGGCCTCCACCGCGTCCCACGCCTCGG
CGCACCCCAGGGCGCCGCCCAGCAGCACGTGCACGGGCCCGTGCGGCT
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