mRNA_H-akashiwo_Contig8.150.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig8.150.1
Unique NamemRNA_H-akashiwo_Contig8.150.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig8.150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig8contigH-akashiwo_Contig8:7346580..7347206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size212
Hectar predicted targeting categoryother localisation
Exons3
Cds size210
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387981.8773072-CDS-H-akashiwo_Contig8:7346579..73466811681387981.8773072-CDS-H-akashiwo_Contig8:7346579..7346681Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig8 7346580..7346681 -
1681387981.8943377-CDS-H-akashiwo_Contig8:7346827..73468831681387981.8943377-CDS-H-akashiwo_Contig8:7346827..7346883Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig8 7346828..7346883 -
1681387981.915029-CDS-H-akashiwo_Contig8:7347154..73472061681387981.915029-CDS-H-akashiwo_Contig8:7347154..7347206Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig8 7347155..7347206 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig8.150.1prot_H-akashiwo_Contig8.150.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig8 7346580..7347206 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig8.150.1

>prot_H-akashiwo_Contig8.150.1 ID=prot_H-akashiwo_Contig8.150.1|Name=mRNA_H-akashiwo_Contig8.150.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=70bp
ILCCSLNALGRKPIDIRVRQYATIGKGIHNELHAQKVENALLRERVHMLE
RREARLAAALARMRKVKMEE
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mRNA from alignment at H-akashiwo_Contig8:7346580..7347206-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig8.150.1 ID=mRNA_H-akashiwo_Contig8.150.1|Name=mRNA_H-akashiwo_Contig8.150.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=627bp|location=Sequence derived from alignment at H-akashiwo_Contig8:7346580..7347206- (Heterosigma akashiwo CCMP452)
ATTCTGTGCTGTAGCCTGAATGCACTGGGTCGAAAGCCAATAGATATCAG
AGGTGGGAGCTTCAAATAATTATGGGTTGTATTCCCCTGTATAGTAGCAT
TTAAAAACAAAATCTTTCCACACCAATTTACAAAGCTTTCACCAAACATT
TCTTTGGATTGTTTCGTGAAAAAAAGCCGGTTTCATTTGTCTATATATGT
GGAAAAAAAGACGTGTCACAACGGCTATGGTACGTGGCTACGGCAACATC
ATGCCCCACCAAAGTCATCGCCACATCTAAATTACTTCCTATGGCCTTTT
TCTGACCACACACTATCTTGCAGTGAGGCAATATGCGACCATTGGAAAGG
GGATCCATAATGAGCTGCACGCCCAGAAGGTAATCAGACATGATCTACGC
ACTCCATTCTCCCTAATGATCAAGCAAGGCAATCCTACCTGGATGTTCAA
GGTGCAGCTTGAACAGTGAAGAGCCTTGGTTTCATGCAGGTGTGTGGCTT
CTTGTTACTGGTGTACATGTTCCAGGTTGAAAATGCTTTGCTCCGGGAGC
GCGTGCACATGTTGGAGCGGAGGGAAGCGAGGCTCGCCGCCGCTCTCGCA
AGAATGAGGAAAGTGAAAATGGAAGAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig8:7346580..7347206-

>mRNA_H-akashiwo_Contig8.150.1 ID=mRNA_H-akashiwo_Contig8.150.1|Name=mRNA_H-akashiwo_Contig8.150.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=210bp|location=Sequence derived from alignment at H-akashiwo_Contig8:7346580..7347206- (Heterosigma akashiwo CCMP452)
ATTCTGTGCTGTAGCCTGAATGCACTGGGTCGAAAGCCAATAGATATCAG
AGTGAGGCAATATGCGACCATTGGAAAGGGGATCCATAATGAGCTGCACG
CCCAGAAGGTTGAAAATGCTTTGCTCCGGGAGCGCGTGCACATGTTGGAG
CGGAGGGAAGCGAGGCTCGCCGCCGCTCTCGCAAGAATGAGGAAAGTGAA
AATGGAAGAG
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