mRNA_H-akashiwo_Contig8.135.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig8.135.1
Unique NamemRNA_H-akashiwo_Contig8.135.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig8.135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig8contigH-akashiwo_Contig8:6140085..6141381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size707
Hectar predicted targeting categorysignal peptide
Exons3
Cds size510
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387981.794553-UTR-H-akashiwo_Contig8:6140084..61401141681387981.794553-UTR-H-akashiwo_Contig8:6140084..6140114Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig8 6140085..6140114 +
1681387981.8381786-UTR-H-akashiwo_Contig8:6141214..61413811681387981.8381786-UTR-H-akashiwo_Contig8:6141214..6141381Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig8 6141215..6141381 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387981.8042743-CDS-H-akashiwo_Contig8:6140114..61404081681387981.8042743-CDS-H-akashiwo_Contig8:6140114..6140408Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig8 6140115..6140408 +
1681387981.8136103-CDS-H-akashiwo_Contig8:6140813..61409251681387981.8136103-CDS-H-akashiwo_Contig8:6140813..6140925Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig8 6140814..6140925 +
1681387981.8234994-CDS-H-akashiwo_Contig8:6141110..61412141681387981.8234994-CDS-H-akashiwo_Contig8:6141110..6141214Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig8 6141111..6141214 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig8.135.1prot_H-akashiwo_Contig8.135.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig8 6140115..6141214 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig8.135.1

>prot_H-akashiwo_Contig8.135.1 ID=prot_H-akashiwo_Contig8.135.1|Name=mRNA_H-akashiwo_Contig8.135.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=170bp
MVHKISLRALLMSCLALLLSTSNAFVGQNDLMNTARHRQDRRALCPAPVF
NPQDRTETRLFAEDKERTERTGKGYASDGVKEAKILFGLLGLLLIRNQFS
TIELRTTSVCPGGPEAERSIQRFKANDDTFHCLPAGELAWKVLTDKWVFP
GDPEFDTQIIRIEMKGVKK*
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mRNA from alignment at H-akashiwo_Contig8:6140085..6141381+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig8.135.1 ID=mRNA_H-akashiwo_Contig8.135.1|Name=mRNA_H-akashiwo_Contig8.135.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1297bp|location=Sequence derived from alignment at H-akashiwo_Contig8:6140085..6141381+ (Heterosigma akashiwo CCMP452)
CAGAATCAGAATATATCATCATTCAGCAGAATGGTGCACAAAATTTCATT
GCGTGCACTGTTGATGAGTTGCCTGGCGCTACTGCTGTCTACTTCGAATG
CATTTGTAGGCCAAAATGACTTAATGAATACTGCTCGTCATCGTCAGGAT
CGTAGAGCCCTCTGTCCGGCCCCTGTTTTCAATCCCCAAGACAGGACGGA
GACCCGCTTGTTTGCTGAGGATAAAGAGCGAACTGAGCGAACTGGAAAGG
GGTATGCATCAGACGGGGTGAAGGAAGCAAAAATTTTGTTCGGTCTTCTG
GGTCTTCTCCTGATTCGGAACCAGGTTTGTAATTGGATGTTTTTATTTCC
CTACTCAATCGGTACCCTCTCCAGTCATCATCCGGTCAGCGTAACATCCT
ACTTGGAGGCACAGGACTCACAGATCAAAATTTCTTGACCCCCTCACAAT
TTGCATTATTTCAAAGATACTCCCAATACTTGCTTCTATTTCAGAGGCAT
TACTTCATGTCGAAACCTCGGGAGCTGGAGCTTCCACCGAGGAAAAACAT
TTTGCAACCAGTGAAGATGGGCAGTTTCCCTGCAGCAATGGCCGTTTGGC
CAATGTTAATAGGAAGGAGAGATTCGCTAGAAGATCAATTAATTGTTCTG
TGCCATCGGTAATCACTTTCATTTCGATTGTTCTATAATCTACTGCTACT
TTTGTTGTTTATTATTTGCTACGGACCAGTTTTCAACCATTGAACTGAGA
ACGACGTCTGTTTGCCCTGGCGGTCCAGAAGCTGAAAGATCTATTCAGCG
CTTCAAAGCAAATGACGACACATTTCACTGTTTGCCTGCAGGTGCACACA
ATATCGGATATTATCTTCATGTTGTTTAGATCTGTGCTCTTCTCTTAATT
TTTTTTCAGAACAAATAATCAGATTGCCTCCGCTCTCGTGCTGCTCTGTT
TATTTATCCTCATTCGTCGCCCTCCAGTTCTGCTTGAACAGATGCTGTGT
GCTCTTGAATAATGATGAATATATAGGTGAACTGGCTTGGAAGGTCTTGA
CTGACAAGTGGGTTTTCCCTGGCGATCCAGAGTTTGACACCCAGATCATT
CGCATTGAAATGAAAGGCGTTAAAAAATGATTCGTTGGTGAACAACTGTA
TTTTTTTTGTTCTGCTGGATTGCGATTCATAATAGAACAGATGCACAAGT
TCCATTTAGCCTGCAGCCGTATGCAAGTCAAGTGAACTGTTTTAGGAAAA
CTGATGCATGTCTGACTTTTATTTCAGCTCCTACTATAATAAATTAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig8:6140085..6141381+

>mRNA_H-akashiwo_Contig8.135.1 ID=mRNA_H-akashiwo_Contig8.135.1|Name=mRNA_H-akashiwo_Contig8.135.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=510bp|location=Sequence derived from alignment at H-akashiwo_Contig8:6140085..6141381+ (Heterosigma akashiwo CCMP452)
ATGGTGCACAAAATTTCATTGCGTGCACTGTTGATGAGTTGCCTGGCGCT
ACTGCTGTCTACTTCGAATGCATTTGTAGGCCAAAATGACTTAATGAATA
CTGCTCGTCATCGTCAGGATCGTAGAGCCCTCTGTCCGGCCCCTGTTTTC
AATCCCCAAGACAGGACGGAGACCCGCTTGTTTGCTGAGGATAAAGAGCG
AACTGAGCGAACTGGAAAGGGGTATGCATCAGACGGGGTGAAGGAAGCAA
AAATTTTGTTCGGTCTTCTGGGTCTTCTCCTGATTCGGAACCAGTTTTCA
ACCATTGAACTGAGAACGACGTCTGTTTGCCCTGGCGGTCCAGAAGCTGA
AAGATCTATTCAGCGCTTCAAAGCAAATGACGACACATTTCACTGTTTGC
CTGCAGGTGAACTGGCTTGGAAGGTCTTGACTGACAAGTGGGTTTTCCCT
GGCGATCCAGAGTTTGACACCCAGATCATTCGCATTGAAATGAAAGGCGT
TAAAAAATGA
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