mRNA_H-akashiwo_Contig8.134.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig8.134.1
Unique NamemRNA_H-akashiwo_Contig8.134.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig8.134.1 vs. uniprot
Match: A0A7S3XTW0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTW0_HETAK)

HSP 1 Score: 175 bits (444), Expect = 5.040e-51
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 3
Query:    3 SMSITAAAVAWTGVITTAMNRFVETTALSRMSSVEASVILATEPLWAAFFAALLLHENFGVNDYVGGALIVLACLANTLKPSDFGQLFSKER 278
            SMSITAAAVAWTGVITTAMNRFVETTALSRMSSVEASVILATEPLWAAFFAALLLHENFGVNDYVGGALIVLACLANTLKPSDFGQLFSKER
Sbjct:  336 SMSITAAAVAWTGVITTAMNRFVETTALSRMSSVEASVILATEPLWAAFFAALLLHENFGVNDYVGGALIVLACLANTLKPSDFGQLFSKER 427          
BLAST of mRNA_H-akashiwo_Contig8.134.1 vs. uniprot
Match: A0A7S2I276_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I276_9STRA)

HSP 1 Score: 141 bits (355), Expect = 1.080e-37
Identity = 72/87 (82.76%), Postives = 78/87 (89.66%), Query Frame = 3
Query:   18 AAAVAWTGVITTAMNRFVETTALSRMSSVEASVILATEPLWAAFFAALLLHENFGVNDYVGGALIVLACLANTLKPSDFGQLFSKER 278
            AAAVAWTG+ITTA+NRFVETTAL +MSS EASVILATEPLWAA FAALLL ENFGVNDYVGG LIVLACLANTL PSDFG+ F + +
Sbjct:  361 AAAVAWTGLITTALNRFVETTALGKMSSAEASVILATEPLWAALFAALLLSENFGVNDYVGGFLIVLACLANTLNPSDFGRFFGQSQ 447          
BLAST of mRNA_H-akashiwo_Contig8.134.1 vs. uniprot
Match: A0A6U0SYC7_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A6U0SYC7_9STRA)

HSP 1 Score: 139 bits (350), Expect = 4.250e-37
Identity = 68/92 (73.91%), Postives = 81/92 (88.04%), Query Frame = 3
Query:    3 SMSITAAAVAWTGVITTAMNRFVETTALSRMSSVEASVILATEPLWAAFFAALLLHENFGVNDYVGGALIVLACLANTLKPSDFGQLFSKER 278
            S+ I A AVAWTG++TTAMNRFVETTAL ++SS EASVILATEPLWAA FAA++L ENFG+NDYVGGALIVLACLAN LKPSDF ++  +++
Sbjct:  344 SLQIAAGAVAWTGLVTTAMNRFVETTALGKVSSAEASVILATEPLWAALFAAIILSENFGINDYVGGALIVLACLANALKPSDFDRILGEKK 435          
BLAST of mRNA_H-akashiwo_Contig8.134.1 vs. uniprot
Match: A0A7S1UQJ2_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UQJ2_9STRA)

HSP 1 Score: 127 bits (318), Expect = 3.210e-34
Identity = 64/88 (72.73%), Postives = 75/88 (85.23%), Query Frame = 3
Query:    3 SMSITAAAVAWTGVITTAMNRFVETTALSRMSSVEASVILATEPLWAAFFAALLLHENFGVNDYVGGALIVLACLANTLKPSDFGQLF 266
            ++ + A AV WTGVITTA+NRFVET+AL +M+S EASVILATEPLWAA FAAL L E+FG+NDY+GGALIV ACLANTLKP+D   LF
Sbjct:  127 TLHMAAGAVLWTGVITTALNRFVETSALGKMASAEASVILATEPLWAALFAALWLGEDFGLNDYIGGALIVFACLANTLKPADLSFLF 214          
BLAST of mRNA_H-akashiwo_Contig8.134.1 vs. uniprot
Match: A0A7S1H3K2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H3K2_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.240e-30
Identity = 58/79 (73.42%), Postives = 69/79 (87.34%), Query Frame = 3
Query:    3 SMSITAAAVAWTGVITTAMNRFVETTALSRMSSVEASVILATEPLWAAFFAALLLHENFGVNDYVGGALIVLACLANTL 239
            S+ I A AVAWTG++TTAMNRF+ETT+L +++S EASV+LATEPLWAA FAALLL E FG NDYVGGA I++ACLANTL
Sbjct:  132 SLRIAAGAVAWTGLVTTAMNRFIETTSLGKIASAEASVLLATEPLWAAIFAALLLGEKFGWNDYVGGAFIIMACLANTL 210          
BLAST of mRNA_H-akashiwo_Contig8.134.1 vs. uniprot
Match: K0R0K3_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R0K3_THAOC)

HSP 1 Score: 117 bits (292), Expect = 1.440e-28
Identity = 60/90 (66.67%), Postives = 69/90 (76.67%), Query Frame = 3
Query:   24 AVAWTGVITTAMNRFVETTALSRMSSVEASVILATEPLWAAFFAALLLHENFGVNDYVGGALIVLACLANTLKPSDFGQLFSKER*LKLR 293
            AV WTG+ TTA+NRF+ETTAL +M S EASVILATEPLWA+ FAAL L E+FG NDYVGGALIVLACLA  L+  DF  +   E   +LR
Sbjct:  375 AVLWTGIATTALNRFIETTALGKMKSAEASVILATEPLWASLFAALWLGEDFGANDYVGGALIVLACLATALRREDFAFVLGNEEKEQLR 464          
BLAST of mRNA_H-akashiwo_Contig8.134.1 vs. uniprot
Match: A0A7S1H1U4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H1U4_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.320e-27
Identity = 51/68 (75.00%), Postives = 61/68 (89.71%), Query Frame = 3
Query:   36 TGVITTAMNRFVETTALSRMSSVEASVILATEPLWAAFFAALLLHENFGVNDYVGGALIVLACLANTL 239
            TG++TTAMNRF+ETT+L +++S EASV+LATEPLWAA FAALLL E FG NDYVGGA I++ACLANTL
Sbjct:   16 TGLVTTAMNRFIETTSLGKIASAEASVLLATEPLWAAIFAALLLGEKFGWNDYVGGAFIIMACLANTL 83          
BLAST of mRNA_H-akashiwo_Contig8.134.1 vs. uniprot
Match: B8C9Z6_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C9Z6_THAPS)

HSP 1 Score: 112 bits (280), Expect = 7.350e-27
Identity = 56/87 (64.37%), Postives = 67/87 (77.01%), Query Frame = 3
Query:    6 MSITAAAVAWTGVITTAMNRFVETTALSRMSSVEASVILATEPLWAAFFAALLLHENFGVNDYVGGALIVLACLANTLKPSDFGQLF 266
            M   A AVAWTGV++T+ N  +E  AL R+ S EASVILATEPLWA+ FAA+L HE FGV+DYVGG L++ ACL NTLKPSDF + F
Sbjct:  366 MRTVALAVAWTGVLSTSTNFCIENCALGRVPSSEASVILATEPLWASLFAAILFHEEFGVSDYVGGVLMITACLVNTLKPSDFKRFF 452          
BLAST of mRNA_H-akashiwo_Contig8.134.1 vs. uniprot
Match: A0A7S2LZI7_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LZI7_9STRA)

HSP 1 Score: 104 bits (259), Expect = 6.030e-24
Identity = 55/88 (62.50%), Postives = 65/88 (73.86%), Query Frame = 3
Query:    3 SMSITAAAVAWTGVITTAMNRFVETTALSRMSSVEASVILATEPLWAAFFAALLLHENFGVNDYVGGALIVLACLANTLKPSDFGQLF 266
            +M   A AVAWTG+I+T+ N  VE TAL R+ S EASVILATEPLWA+ FAAL L  +FG NDY+GGALIV ACLA +L+  DF   F
Sbjct:  340 NMRTVAMAVAWTGIISTSTNFCVEITALGRVPSSEASVILATEPLWASLFAALWLSTDFGANDYIGGALIVAACLATSLQKDDFNGFF 427          
BLAST of mRNA_H-akashiwo_Contig8.134.1 vs. uniprot
Match: A0A7S4MWI2_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MWI2_9STRA)

HSP 1 Score: 102 bits (253), Expect = 5.470e-23
Identity = 52/91 (57.14%), Postives = 64/91 (70.33%), Query Frame = 3
Query:    3 SMSITAAAVAWTGVITTAMNRFVETTALSRMSSVEASVILATEPLWAAFFAALLLHENFGVNDYVGGALIVLACLANTLKPSDFGQLFSKE 275
            S+   A A  WTG+ITTA NR  ETT L +MSS EA+V+LATEPLWAA FA+ L+HE+ G+ D VGGALIV ACL  T++P     LF  +
Sbjct:  375 SLRNVAIAAGWTGLITTAANRVGETTGLGKMSSSEAAVLLATEPLWAAVFASFLIHESMGIEDIVGGALIVGACLTTTIRPETLQNLFGMD 465          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig8.134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XTW0_HETAK5.040e-51100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2I276_9STRA1.080e-3782.76Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A6U0SYC7_9STRA4.250e-3773.91Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S1UQJ2_9STRA3.210e-3472.73Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S1H3K2_9STRA1.240e-3073.42Hypothetical protein (Fragment) n=1 Tax=Thalassion... [more]
K0R0K3_THAOC1.440e-2866.67Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S1H1U4_9STRA1.320e-2775.00Hypothetical protein (Fragment) n=1 Tax=Thalassion... [more]
B8C9Z6_THAPS7.350e-2764.37Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2LZI7_9STRA6.030e-2462.50Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S4MWI2_9STRA5.470e-2357.14Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig8contigH-akashiwo_Contig8:6059291..6059640 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog159749.K0R0K3
PFAMsEamA
Model size350
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categorysignal peptide
Exons1
Evalue2.47e-29
EggNOG OGsCOG0697@1|root,2S80D@2759|Eukaryota,2XGJU@2836|Bacillariophyta
DescriptionEamA-like transporter family
Cds size276
COG categoryEG
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387985.714178-UTR-H-akashiwo_Contig8:6059290..60592951681387985.714178-UTR-H-akashiwo_Contig8:6059290..6059295Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig8 6059291..6059295 +
1681387985.7317362-UTR-H-akashiwo_Contig8:6059571..60596401681387985.7317362-UTR-H-akashiwo_Contig8:6059571..6059640Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig8 6059572..6059640 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387985.723376-CDS-H-akashiwo_Contig8:6059295..60595711681387985.723376-CDS-H-akashiwo_Contig8:6059295..6059571Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig8 6059296..6059571 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig8.134.1prot_H-akashiwo_Contig8.134.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig8 6059296..6059571 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig8.134.1

>prot_H-akashiwo_Contig8.134.1 ID=prot_H-akashiwo_Contig8.134.1|Name=mRNA_H-akashiwo_Contig8.134.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=92bp
MSITAAAVAWTGVITTAMNRFVETTALSRMSSVEASVILATEPLWAAFFA
ALLLHENFGVNDYVGGALIVLACLANTLKPSDFGQLFSKER*
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mRNA from alignment at H-akashiwo_Contig8:6059291..6059640+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig8.134.1 ID=mRNA_H-akashiwo_Contig8.134.1|Name=mRNA_H-akashiwo_Contig8.134.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=350bp|location=Sequence derived from alignment at H-akashiwo_Contig8:6059291..6059640+ (Heterosigma akashiwo CCMP452)
CTTCCATGAGCATAACTGCGGCTGCGGTTGCATGGACAGGAGTAATCACA ACTGCCATGAATAGATTTGTTGAGACCACTGCACTAAGCAGAATGTCTTC GGTAGAAGCGTCTGTCATATTAGCTACAGAACCATTATGGGCCGCTTTCT TTGCAGCGCTCTTGTTACACGAAAATTTCGGGGTCAATGACTATGTTGGA GGTGCTCTGATTGTCTTAGCCTGTCTTGCCAATACGCTTAAACCGTCAGA TTTCGGGCAACTTTTCAGCAAGGAAAGATGATTAAAACTGCGATGATTAA AATCATTAGAGCATGGAAGGAGTAGTATTACAGCAGGGAGGGGTATATAC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig8:6059291..6059640+

>mRNA_H-akashiwo_Contig8.134.1 ID=mRNA_H-akashiwo_Contig8.134.1|Name=mRNA_H-akashiwo_Contig8.134.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=276bp|location=Sequence derived from alignment at H-akashiwo_Contig8:6059291..6059640+ (Heterosigma akashiwo CCMP452)
ATGAGCATAACTGCGGCTGCGGTTGCATGGACAGGAGTAATCACAACTGC
CATGAATAGATTTGTTGAGACCACTGCACTAAGCAGAATGTCTTCGGTAG
AAGCGTCTGTCATATTAGCTACAGAACCATTATGGGCCGCTTTCTTTGCA
GCGCTCTTGTTACACGAAAATTTCGGGGTCAATGACTATGTTGGAGGTGC
TCTGATTGTCTTAGCCTGTCTTGCCAATACGCTTAAACCGTCAGATTTCG
GGCAACTTTTCAGCAAGGAAAGATGA
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