mRNA_H-akashiwo_Contig8.132.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig8.132.1
Unique NamemRNA_H-akashiwo_Contig8.132.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig8.132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig8contigH-akashiwo_Contig8:5923048..5923619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size572
Hectar predicted targeting categoryother localisation
Exons1
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387982.3019106-UTR-H-akashiwo_Contig8:5923047..59232731681387982.3019106-UTR-H-akashiwo_Contig8:5923047..5923273Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig8 5923048..5923273 +
1681387982.3223686-UTR-H-akashiwo_Contig8:5923588..59236191681387982.3223686-UTR-H-akashiwo_Contig8:5923588..5923619Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig8 5923589..5923619 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387982.3120918-CDS-H-akashiwo_Contig8:5923273..59235881681387982.3120918-CDS-H-akashiwo_Contig8:5923273..5923588Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig8 5923274..5923588 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig8.132.1prot_H-akashiwo_Contig8.132.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig8 5923274..5923588 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig8.132.1

>prot_H-akashiwo_Contig8.132.1 ID=prot_H-akashiwo_Contig8.132.1|Name=mRNA_H-akashiwo_Contig8.132.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=105bp
MVQQADQAHCTQLQQPTRQGQSRPPCSKSKYPTEVYETMPGTRELTFLPR
CPSVMFIVARNSFLRPSLEKRVASDAFNPKNILGALGVKGSQSAELGKRG
YEVS*
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mRNA from alignment at H-akashiwo_Contig8:5923048..5923619+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig8.132.1 ID=mRNA_H-akashiwo_Contig8.132.1|Name=mRNA_H-akashiwo_Contig8.132.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=572bp|location=Sequence derived from alignment at H-akashiwo_Contig8:5923048..5923619+ (Heterosigma akashiwo CCMP452)
CTTTCTTATAGACCAGAAAAGACTGGCTGCCCCTATTATGCTGACCCATA
AAGGGGGGTAGGGTGTGTGTGTGCCCGAAAAACAAATAAAAAATATAACT
ACAAATATATTCACTACCAAGTAGCAAACAACCTAACAAATATAATCTAA
TAAAAAAATATCAACACACATATCATCAACATCAAACCAAGTAACGACCT
ATGATTGACTTATCATCAGACCAGTCATGGTTCAGCAGGCAGACCAAGCA
CATTGCACCCAACTCCAACAACCAACTCGTCAAGGGCAATCTCGACCTCC
TTGTTCCAAATCAAAGTATCCCACTGAGGTGTATGAAACTATGCCCGGAA
CAAGGGAGCTTACTTTCCTGCCCAGGTGCCCTAGTGTAATGTTTATCGTT
GCTAGGAACTCTTTTCTACGACCCTCTTTGGAGAAAAGAGTGGCCAGTGA
TGCTTTCAACCCAAAAAATATTCTGGGTGCCTTAGGTGTGAAGGGTAGTC
AGTCTGCTGAGTTGGGAAAGAGGGGGTACGAAGTCTCATAACATTTACTA
TATTCATTTATGAGTCTCCCTA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig8:5923048..5923619+

>mRNA_H-akashiwo_Contig8.132.1 ID=mRNA_H-akashiwo_Contig8.132.1|Name=mRNA_H-akashiwo_Contig8.132.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=315bp|location=Sequence derived from alignment at H-akashiwo_Contig8:5923048..5923619+ (Heterosigma akashiwo CCMP452)
ATGGTTCAGCAGGCAGACCAAGCACATTGCACCCAACTCCAACAACCAAC
TCGTCAAGGGCAATCTCGACCTCCTTGTTCCAAATCAAAGTATCCCACTG
AGGTGTATGAAACTATGCCCGGAACAAGGGAGCTTACTTTCCTGCCCAGG
TGCCCTAGTGTAATGTTTATCGTTGCTAGGAACTCTTTTCTACGACCCTC
TTTGGAGAAAAGAGTGGCCAGTGATGCTTTCAACCCAAAAAATATTCTGG
GTGCCTTAGGTGTGAAGGGTAGTCAGTCTGCTGAGTTGGGAAAGAGGGGG
TACGAAGTCTCATAA
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