mRNA_H-akashiwo_Contig8.11.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig8.11.1
Unique NamemRNA_H-akashiwo_Contig8.11.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig8.11.1 vs. uniprot
Match: A0A7S3Y8R9_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8R9_HETAK)

HSP 1 Score: 219 bits (559), Expect = 9.310e-64
Identity = 134/194 (69.07%), Postives = 139/194 (71.65%), Query Frame = 1
Query:    1 SLQSEWRFLQRLIPGSSPCFKELDDVIARVFIPALVGRRVSDLEKRLFALPTRFAGLGIGVPSKQAQTAYDLSVASTSMVREAIQEGRRLDVPGHRAFFGVKLLEHRGSGGGA*GXXXXXXAGA*A**ADEDPGSD*---LQSDGLA*CAAFSGALV*PL-R*AVARSA-------GAQVGWQLKGLPAKCDGC 549
            SLQSEWRFLQRLIPGSSPCFKELDDVIARVFIPALVGRRVSDLEKRLFALPTRFAGLGIGVPSKQAQTAYDLSVASTSMVREAIQEGRRLDVPGHRAFFGVK  EH G+            A   A   + +P        Q D  A   A+  AL  PL   +   SA         QVGWQLKGLPAKCDGC
Sbjct:  463 SLQSEWRFLQRLIPGSSPCFKELDDVIARVFIPALVGRRVSDLEKRLFALPTRFAGLGIGVPSKQAQTAYDLSVASTSMVREAIQEGRRLDVPGHRAFFGVKQREHWGAA------EAEHKAELEAVLLELEPDRRMRIRAQIDSKA--TAWLSAL--PLAEHSFDLSAEQWRDRLALQVGWQLKGLPAKCDGC 646          
BLAST of mRNA_H-akashiwo_Contig8.11.1 vs. uniprot
Match: A0A7S4DE70_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DE70_HETAK)

HSP 1 Score: 125 bits (313), Expect = 2.070e-31
Identity = 84/192 (43.75%), Postives = 104/192 (54.17%), Query Frame = 1
Query:    1 SLQSEWRFLQRLIPGSSPCFKELDDVIARVFIPALVGRR-VSDLEKRLFALPTRFAGLGIGVPSKQAQTAYDLSVASTSMVREAIQEGRRLDVPGHRAFFGVKLLEHRGSGGGA*GXXXXXXAGA*A**ADEDPGSD*LQSDGLA*CAAFSGALV*P-LR*AVARSAGA-------QVGWQLKGLPAKCDGC 549
            SLQSEW+FLQRLIPGSS  F EL+DVI R FIPAL+ RR  S+ E  LF LP R+ GLGI  P+K AQ++Y+LS ++TSMVREAI     LDVPGHRA++  +  + R  G                    +       +  G       S   V P  + +   SA         Q GW L+GLP KCDGC
Sbjct:   92 SLQSEWKFLQRLIPGSSAWFGELNDVIKREFIPALLARRQFSEAEMELFELPVRWGGLGILDPTKAAQSSYELSFSATSMVREAILGDEPLDVPGHRAYYAGQQRKRRAEGEAELKARYEEVL-------SKLRPEQRQKVQGQVDSKGMSWMSVVPRAKESFDLSAQQWRDRVHLQYGWDLQGLPEKCDGC 276          
BLAST of mRNA_H-akashiwo_Contig8.11.1 vs. uniprot
Match: A0A7S3Y8Q7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8Q7_HETAK)

HSP 1 Score: 125 bits (313), Expect = 1.940e-30
Identity = 84/192 (43.75%), Postives = 104/192 (54.17%), Query Frame = 1
Query:    1 SLQSEWRFLQRLIPGSSPCFKELDDVIARVFIPALVGRR-VSDLEKRLFALPTRFAGLGIGVPSKQAQTAYDLSVASTSMVREAIQEGRRLDVPGHRAFFGVKLLEHRGSGGGA*GXXXXXXAGA*A**ADEDPGSD*LQSDGLA*CAAFSGALV*P-LR*AVARSAGA-------QVGWQLKGLPAKCDGC 549
            SLQSEW+FLQRLIPGSS  F EL+DVI R FIPAL+ RR  S+ E  LF LP R+ GLGI  P+K AQ++Y+LS ++TSMVREAI     LDVPGHRA++  +  + R  G                    +       +  G       S   V P  + +   SA         Q GW L+GLP KCDGC
Sbjct:   92 SLQSEWKFLQRLIPGSSAWFGELNDVIKREFIPALLARRQFSEAEMELFELPVRWGGLGILDPTKAAQSSYELSFSATSMVREAILGDEPLDVPGHRAYYAGQQRKRRAEGEAELKARYEEVL-------SKLRPEQRQKVQGQVDSKGMSWMSVVPRAKESFDLSAQQWRDRVHLQYGWDLQGLPEKCDGC 276          
BLAST of mRNA_H-akashiwo_Contig8.11.1 vs. uniprot
Match: A0A0A9XPX8_LYGHE (Photosystem II reaction center Psb28 protein (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9XPX8_LYGHE)

HSP 1 Score: 77.4 bits (189), Expect = 6.870e-14
Identity = 41/95 (43.16%), Postives = 55/95 (57.89%), Query Frame = 1
Query:    1 SLQSEWRFLQRLIPGSSPCFKELDDVIARVFIPALVGRRVSDLEKRLFALPTRFAGLGIGVPSKQAQTAYDLSVASTSMVREAIQEGRRLDVPGH 285
            SL  EW FLQR++ G +  +  L D I RVFIPAL+G  VS+L+  LF LP +  GL +  P + A   Y  S  ST ++ EA+  G  LD+  H
Sbjct:   40 SLSKEWVFLQRVVEGCTGEYDPLRDCIRRVFIPALMGEDVSNLDAELFELPVKLGGLAVEDPVRTASLNYSASKRSTMILAEALVTGESLDLDLH 134          
BLAST of mRNA_H-akashiwo_Contig8.11.1 vs. uniprot
Match: A0A7S4DE02_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DE02_HETAK)

HSP 1 Score: 72.8 bits (177), Expect = 4.840e-13
Identity = 38/57 (66.67%), Postives = 43/57 (75.44%), Query Frame = 1
Query:    1 SLQSEWRFLQRLIPGSSPCFKELDDVIARVFIPALVGRR-VSDLEKRLFALPTRFAG 168
            SLQSEW+FLQRLIPGSS  F EL+DVI R FIPAL+ RR  S+ E  LF LP R+ G
Sbjct:   92 SLQSEWKFLQRLIPGSSAWFGELNDVIKREFIPALLARRQFSEAEMELFKLPVRWGG 148          
BLAST of mRNA_H-akashiwo_Contig8.11.1 vs. uniprot
Match: A0A146L2U3_LYGHE (Uncharacterized protein (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A146L2U3_LYGHE)

HSP 1 Score: 76.3 bits (186), Expect = 7.190e-13
Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 1
Query:    1 SLQSEWRFLQRLIPGSSPCFKELDDVIARVFIPALVGRRVSDLEKRLFALPTRFAGLGIGVPSKQAQTAYDLSVASTSMVREAIQEGRRLDVPGH 285
            SL  EW F QR++ G    ++ L + I +VF+PALVG  +SDLE +LF LP +  GL +  P K A   Y+ S  +T ++ EA+  GR  D   H
Sbjct:  602 SLCREWAFTQRVVGGCDDEYEPLRNAIRQVFVPALVGESLSDLEAKLFELPLKSGGLALEDPVKSAPVNYNASEKATRVLAEALATGRNFDTNQH 696          
BLAST of mRNA_H-akashiwo_Contig8.11.1 vs. uniprot
Match: A0A1X7V5K4_AMPQE (Reverse transcriptase domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7V5K4_AMPQE)

HSP 1 Score: 63.2 bits (152), Expect = 2.460e-8
Identity = 31/85 (36.47%), Postives = 49/85 (57.65%), Query Frame = 1
Query:    1 SLQSEWRFLQRLIPGSSPCFKELDDVIARVFIPALVGRRVSDLEKRLFALPTRFAGLGIGVPSKQAQTAYDLSVASTSMVREAIQ 255
            S+QS+W +LQR++P     F  L+ +I++ FIP + G  +S  E+ L  LP R  GL I  P+  + T Y  S   TS + +A++
Sbjct:  656 SVQSQWAYLQRVVPDCGSSFIPLEQLISQRFIPTIFGCEISPTERSLLTLPARLGGLNIQDPTLTSTTNYTTSRRLTSPIVDALK 740          
BLAST of mRNA_H-akashiwo_Contig8.11.1 vs. uniprot
Match: A0A0G4I0X4_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I0X4_9ALVE)

HSP 1 Score: 62.8 bits (151), Expect = 2.960e-8
Identity = 40/103 (38.83%), Postives = 56/103 (54.37%), Query Frame = 1
Query:    1 SLQSEWRFLQRLIPGSSPCFKELDDVIARVFIPALV-GRRVS------DLEKR-LFALPTRFAGLGIGVPSKQAQTAYDLSVASTSMVREAIQEGRRLDVPGH 285
            SLQ EW+F+ R++PG+     +L+D I    IPAL+ GRR        D+  R + ALP R  GLGI  P++ A   Y  S A++  + EAI  G  +D   H
Sbjct:  142 SLQHEWKFVTRVVPGAGGQMGQLEDTIRDRLIPALMKGRRNGGPPIQHDVWLRDVAALPVRLLGLGIPKPTETADKDYKTSAAASKAITEAILRGEDIDADEH 244          
BLAST of mRNA_H-akashiwo_Contig8.11.1 vs. uniprot
Match: A0A0K6SA22_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0K6SA22_9ALVE)

HSP 1 Score: 59.7 bits (143), Expect = 4.190e-8
Identity = 38/103 (36.89%), Postives = 55/103 (53.40%), Query Frame = 1
Query:    1 SLQSEWRFLQRLIPGSSPCFKELDDVIARVFIPALV-GRRVS------DLEKR-LFALPTRFAGLGIGVPSKQAQTAYDLSVASTSMVREAIQEGRRLDVPGH 285
            SLQ EW+F+ R++PG+     +L+ +I    IP L+ GRR        D+  R + ALP R  GLGI  P++ A   Y  S A++  + EAI  G  +D   H
Sbjct:   17 SLQHEWKFVARVVPGAGEQMGQLEGIIRDRLIPVLMKGRRNGGPPTQYDVWLRDVTALPVRLLGLGIPKPTETADRDYKTSAAASEAITEAIFRGEDIDADEH 119          
BLAST of mRNA_H-akashiwo_Contig8.11.1 vs. uniprot
Match: A0A0G4H122_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H122_9ALVE)

HSP 1 Score: 61.6 bits (148), Expect = 4.930e-8
Identity = 40/103 (38.83%), Postives = 56/103 (54.37%), Query Frame = 1
Query:    1 SLQSEWRFLQRLIPGSSPCFKELDDVIARVFIPALV-GRRVS------DLEKR-LFALPTRFAGLGIGVPSKQAQTAYDLSVASTSMVREAIQEGRRLDVPGH 285
            SLQ EW+F+ R++PG+     +L+  I    IPAL+ GRR        D+  R + ALP R  GLGI  P+K A   Y  S A++  + EAI +G  +D   H
Sbjct:   41 SLQHEWKFVARVVPGAGGQMGQLEGTIRDRLIPALMKGRRNGGPTTQYDVWLRDVAALPVRLLGLGIPKPTKTADRDYKTSAAASEAIIEAILQGEDIDTDEH 143          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig8.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A7S3Y8R9_HETAK9.310e-6469.07Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S4DE70_HETAK2.070e-3143.75Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y8Q7_HETAK1.940e-3043.75Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0A9XPX8_LYGHE6.870e-1443.16Photosystem II reaction center Psb28 protein (Frag... [more]
A0A7S4DE02_HETAK4.840e-1366.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A146L2U3_LYGHE7.190e-1341.05Uncharacterized protein (Fragment) n=1 Tax=Lygus h... [more]
A0A1X7V5K4_AMPQE2.460e-836.47Reverse transcriptase domain-containing protein n=... [more]
A0A0G4I0X4_9ALVE2.960e-838.83Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A0K6SA22_9ALVE4.190e-836.89Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A0G4H122_9ALVE4.930e-838.83Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig8contigH-akashiwo_Contig8:218135..218683 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog27923.ML02441a-PA
PFAMsRVT_1
Model size549
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.48e-15
EggNOG OGs2E24P@1|root,2S9D9@2759|Eukaryota,3A6X8@33154|Opisthokonta,3BYHR@33208|Metazoa
Cds size342
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387982.916077-CDS-H-akashiwo_Contig8:218134..2184761681387982.916077-CDS-H-akashiwo_Contig8:218134..218476Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig8 218135..218476 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387982.9302666-UTR-H-akashiwo_Contig8:218476..2186831681387982.9302666-UTR-H-akashiwo_Contig8:218476..218683Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig8 218477..218683 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig8.11.1prot_H-akashiwo_Contig8.11.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig8 218135..218476 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig8.11.1

>prot_H-akashiwo_Contig8.11.1 ID=prot_H-akashiwo_Contig8.11.1|Name=mRNA_H-akashiwo_Contig8.11.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=114bp
SLQSEWRFLQRLIPGSSPCFKELDDVIARVFIPALVGRRVSDLEKRLFAL
PTRFAGLGIGVPSKQAQTAYDLSVASTSMVREAIQEGRRLDVPGHRAFFG
VKLLEHRGSGGGA*
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mRNA from alignment at H-akashiwo_Contig8:218135..218683+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig8.11.1 ID=mRNA_H-akashiwo_Contig8.11.1|Name=mRNA_H-akashiwo_Contig8.11.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=549bp|location=Sequence derived from alignment at H-akashiwo_Contig8:218135..218683+ (Heterosigma akashiwo CCMP452)
TCTTTGCAGAGTGAATGGCGGTTTCTGCAGCGCCTGATTCCTGGCTCGTC TCCTTGCTTCAAGGAGCTAGACGACGTCATTGCGCGCGTGTTCATCCCAG CACTGGTGGGGAGGAGGGTGTCCGACCTTGAGAAGCGCTTGTTTGCGCTT CCTACCAGGTTTGCTGGCTTGGGTATTGGCGTCCCCTCCAAGCAGGCTCA AACTGCCTATGATCTGTCTGTTGCTTCTACTTCAATGGTGAGAGAGGCCA TCCAGGAGGGCCGGCGGCTGGATGTCCCTGGCCATCGTGCCTTCTTTGGC GTGAAGCTGCTGGAGCATCGGGGCAGCGGAGGCGGAGCATAAGGCGGAGC TGGAGGCGGTGCTGCTGGAGCTTGAGCCTGATAGGCGGATGAGGATCCGG GCTCAGATTGACTCCAAAGCGACGGCCTGGCTTAGTGCGCTGCCTTTAGC GGAGCACTCGTTTGACCTCTCCGCTGAGCAGTGGCGCGATCGGCTGGCGC CCAGGTCGGGTGGCAGCTGAAGGGGTTGCCTGCCAAATGCGATGGCTGT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig8:218135..218683+

>mRNA_H-akashiwo_Contig8.11.1 ID=mRNA_H-akashiwo_Contig8.11.1|Name=mRNA_H-akashiwo_Contig8.11.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=342bp|location=Sequence derived from alignment at H-akashiwo_Contig8:218135..218683+ (Heterosigma akashiwo CCMP452)
TCTTTGCAGAGTGAATGGCGGTTTCTGCAGCGCCTGATTCCTGGCTCGTC
TCCTTGCTTCAAGGAGCTAGACGACGTCATTGCGCGCGTGTTCATCCCAG
CACTGGTGGGGAGGAGGGTGTCCGACCTTGAGAAGCGCTTGTTTGCGCTT
CCTACCAGGTTTGCTGGCTTGGGTATTGGCGTCCCCTCCAAGCAGGCTCA
AACTGCCTATGATCTGTCTGTTGCTTCTACTTCAATGGTGAGAGAGGCCA
TCCAGGAGGGCCGGCGGCTGGATGTCCCTGGCCATCGTGCCTTCTTTGGC
GTGAAGCTGCTGGAGCATCGGGGCAGCGGAGGCGGAGCATAA
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