mRNA_H-akashiwo_Contig8.11.1 (mRNA) Heterosigma akashiwo CCMP452
Overview
Homology
BLAST of mRNA_H-akashiwo_Contig8.11.1 vs. uniprot
Match: A0A7S3Y8R9_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8R9_HETAK) HSP 1 Score: 219 bits (559), Expect = 9.310e-64 Identity = 134/194 (69.07%), Postives = 139/194 (71.65%), Query Frame = 1 Query: 1 SLQSEWRFLQRLIPGSSPCFKELDDVIARVFIPALVGRRVSDLEKRLFALPTRFAGLGIGVPSKQAQTAYDLSVASTSMVREAIQEGRRLDVPGHRAFFGVKLLEHRGSGGGA*GXXXXXXAGA*A**ADEDPGSD*---LQSDGLA*CAAFSGALV*PL-R*AVARSA-------GAQVGWQLKGLPAKCDGC 549 SLQSEWRFLQRLIPGSSPCFKELDDVIARVFIPALVGRRVSDLEKRLFALPTRFAGLGIGVPSKQAQTAYDLSVASTSMVREAIQEGRRLDVPGHRAFFGVK EH G+ A A + +P Q D A A+ AL PL + SA QVGWQLKGLPAKCDGC Sbjct: 463 SLQSEWRFLQRLIPGSSPCFKELDDVIARVFIPALVGRRVSDLEKRLFALPTRFAGLGIGVPSKQAQTAYDLSVASTSMVREAIQEGRRLDVPGHRAFFGVKQREHWGAA------EAEHKAELEAVLLELEPDRRMRIRAQIDSKA--TAWLSAL--PLAEHSFDLSAEQWRDRLALQVGWQLKGLPAKCDGC 646
BLAST of mRNA_H-akashiwo_Contig8.11.1 vs. uniprot
Match: A0A7S4DE70_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DE70_HETAK) HSP 1 Score: 125 bits (313), Expect = 2.070e-31 Identity = 84/192 (43.75%), Postives = 104/192 (54.17%), Query Frame = 1 Query: 1 SLQSEWRFLQRLIPGSSPCFKELDDVIARVFIPALVGRR-VSDLEKRLFALPTRFAGLGIGVPSKQAQTAYDLSVASTSMVREAIQEGRRLDVPGHRAFFGVKLLEHRGSGGGA*GXXXXXXAGA*A**ADEDPGSD*LQSDGLA*CAAFSGALV*P-LR*AVARSAGA-------QVGWQLKGLPAKCDGC 549 SLQSEW+FLQRLIPGSS F EL+DVI R FIPAL+ RR S+ E LF LP R+ GLGI P+K AQ++Y+LS ++TSMVREAI LDVPGHRA++ + + R G + + G S V P + + SA Q GW L+GLP KCDGC Sbjct: 92 SLQSEWKFLQRLIPGSSAWFGELNDVIKREFIPALLARRQFSEAEMELFELPVRWGGLGILDPTKAAQSSYELSFSATSMVREAILGDEPLDVPGHRAYYAGQQRKRRAEGEAELKARYEEVL-------SKLRPEQRQKVQGQVDSKGMSWMSVVPRAKESFDLSAQQWRDRVHLQYGWDLQGLPEKCDGC 276
BLAST of mRNA_H-akashiwo_Contig8.11.1 vs. uniprot
Match: A0A7S3Y8Q7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8Q7_HETAK) HSP 1 Score: 125 bits (313), Expect = 1.940e-30 Identity = 84/192 (43.75%), Postives = 104/192 (54.17%), Query Frame = 1 Query: 1 SLQSEWRFLQRLIPGSSPCFKELDDVIARVFIPALVGRR-VSDLEKRLFALPTRFAGLGIGVPSKQAQTAYDLSVASTSMVREAIQEGRRLDVPGHRAFFGVKLLEHRGSGGGA*GXXXXXXAGA*A**ADEDPGSD*LQSDGLA*CAAFSGALV*P-LR*AVARSAGA-------QVGWQLKGLPAKCDGC 549 SLQSEW+FLQRLIPGSS F EL+DVI R FIPAL+ RR S+ E LF LP R+ GLGI P+K AQ++Y+LS ++TSMVREAI LDVPGHRA++ + + R G + + G S V P + + SA Q GW L+GLP KCDGC Sbjct: 92 SLQSEWKFLQRLIPGSSAWFGELNDVIKREFIPALLARRQFSEAEMELFELPVRWGGLGILDPTKAAQSSYELSFSATSMVREAILGDEPLDVPGHRAYYAGQQRKRRAEGEAELKARYEEVL-------SKLRPEQRQKVQGQVDSKGMSWMSVVPRAKESFDLSAQQWRDRVHLQYGWDLQGLPEKCDGC 276
BLAST of mRNA_H-akashiwo_Contig8.11.1 vs. uniprot
Match: A0A0A9XPX8_LYGHE (Photosystem II reaction center Psb28 protein (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9XPX8_LYGHE) HSP 1 Score: 77.4 bits (189), Expect = 6.870e-14 Identity = 41/95 (43.16%), Postives = 55/95 (57.89%), Query Frame = 1 Query: 1 SLQSEWRFLQRLIPGSSPCFKELDDVIARVFIPALVGRRVSDLEKRLFALPTRFAGLGIGVPSKQAQTAYDLSVASTSMVREAIQEGRRLDVPGH 285 SL EW FLQR++ G + + L D I RVFIPAL+G VS+L+ LF LP + GL + P + A Y S ST ++ EA+ G LD+ H Sbjct: 40 SLSKEWVFLQRVVEGCTGEYDPLRDCIRRVFIPALMGEDVSNLDAELFELPVKLGGLAVEDPVRTASLNYSASKRSTMILAEALVTGESLDLDLH 134
BLAST of mRNA_H-akashiwo_Contig8.11.1 vs. uniprot
Match: A0A7S4DE02_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DE02_HETAK) HSP 1 Score: 72.8 bits (177), Expect = 4.840e-13 Identity = 38/57 (66.67%), Postives = 43/57 (75.44%), Query Frame = 1 Query: 1 SLQSEWRFLQRLIPGSSPCFKELDDVIARVFIPALVGRR-VSDLEKRLFALPTRFAG 168 SLQSEW+FLQRLIPGSS F EL+DVI R FIPAL+ RR S+ E LF LP R+ G Sbjct: 92 SLQSEWKFLQRLIPGSSAWFGELNDVIKREFIPALLARRQFSEAEMELFKLPVRWGG 148
BLAST of mRNA_H-akashiwo_Contig8.11.1 vs. uniprot
Match: A0A146L2U3_LYGHE (Uncharacterized protein (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A146L2U3_LYGHE) HSP 1 Score: 76.3 bits (186), Expect = 7.190e-13 Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 1 Query: 1 SLQSEWRFLQRLIPGSSPCFKELDDVIARVFIPALVGRRVSDLEKRLFALPTRFAGLGIGVPSKQAQTAYDLSVASTSMVREAIQEGRRLDVPGH 285 SL EW F QR++ G ++ L + I +VF+PALVG +SDLE +LF LP + GL + P K A Y+ S +T ++ EA+ GR D H Sbjct: 602 SLCREWAFTQRVVGGCDDEYEPLRNAIRQVFVPALVGESLSDLEAKLFELPLKSGGLALEDPVKSAPVNYNASEKATRVLAEALATGRNFDTNQH 696
BLAST of mRNA_H-akashiwo_Contig8.11.1 vs. uniprot
Match: A0A1X7V5K4_AMPQE (Reverse transcriptase domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7V5K4_AMPQE) HSP 1 Score: 63.2 bits (152), Expect = 2.460e-8 Identity = 31/85 (36.47%), Postives = 49/85 (57.65%), Query Frame = 1 Query: 1 SLQSEWRFLQRLIPGSSPCFKELDDVIARVFIPALVGRRVSDLEKRLFALPTRFAGLGIGVPSKQAQTAYDLSVASTSMVREAIQ 255 S+QS+W +LQR++P F L+ +I++ FIP + G +S E+ L LP R GL I P+ + T Y S TS + +A++ Sbjct: 656 SVQSQWAYLQRVVPDCGSSFIPLEQLISQRFIPTIFGCEISPTERSLLTLPARLGGLNIQDPTLTSTTNYTTSRRLTSPIVDALK 740
BLAST of mRNA_H-akashiwo_Contig8.11.1 vs. uniprot
Match: A0A0G4I0X4_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I0X4_9ALVE) HSP 1 Score: 62.8 bits (151), Expect = 2.960e-8 Identity = 40/103 (38.83%), Postives = 56/103 (54.37%), Query Frame = 1 Query: 1 SLQSEWRFLQRLIPGSSPCFKELDDVIARVFIPALV-GRRVS------DLEKR-LFALPTRFAGLGIGVPSKQAQTAYDLSVASTSMVREAIQEGRRLDVPGH 285 SLQ EW+F+ R++PG+ +L+D I IPAL+ GRR D+ R + ALP R GLGI P++ A Y S A++ + EAI G +D H Sbjct: 142 SLQHEWKFVTRVVPGAGGQMGQLEDTIRDRLIPALMKGRRNGGPPIQHDVWLRDVAALPVRLLGLGIPKPTETADKDYKTSAAASKAITEAILRGEDIDADEH 244
BLAST of mRNA_H-akashiwo_Contig8.11.1 vs. uniprot
Match: A0A0K6SA22_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0K6SA22_9ALVE) HSP 1 Score: 59.7 bits (143), Expect = 4.190e-8 Identity = 38/103 (36.89%), Postives = 55/103 (53.40%), Query Frame = 1 Query: 1 SLQSEWRFLQRLIPGSSPCFKELDDVIARVFIPALV-GRRVS------DLEKR-LFALPTRFAGLGIGVPSKQAQTAYDLSVASTSMVREAIQEGRRLDVPGH 285 SLQ EW+F+ R++PG+ +L+ +I IP L+ GRR D+ R + ALP R GLGI P++ A Y S A++ + EAI G +D H Sbjct: 17 SLQHEWKFVARVVPGAGEQMGQLEGIIRDRLIPVLMKGRRNGGPPTQYDVWLRDVTALPVRLLGLGIPKPTETADRDYKTSAAASEAITEAIFRGEDIDADEH 119
BLAST of mRNA_H-akashiwo_Contig8.11.1 vs. uniprot
Match: A0A0G4H122_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H122_9ALVE) HSP 1 Score: 61.6 bits (148), Expect = 4.930e-8 Identity = 40/103 (38.83%), Postives = 56/103 (54.37%), Query Frame = 1 Query: 1 SLQSEWRFLQRLIPGSSPCFKELDDVIARVFIPALV-GRRVS------DLEKR-LFALPTRFAGLGIGVPSKQAQTAYDLSVASTSMVREAIQEGRRLDVPGH 285 SLQ EW+F+ R++PG+ +L+ I IPAL+ GRR D+ R + ALP R GLGI P+K A Y S A++ + EAI +G +D H Sbjct: 41 SLQHEWKFVARVVPGAGGQMGQLEGTIRDRLIPALMKGRRNGGPTTQYDVWLRDVAALPVRLLGLGIPKPTKTADRDYKTSAAASEAIIEAILQGEDIDTDEH 143 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig8.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig8.11.1 >prot_H-akashiwo_Contig8.11.1 ID=prot_H-akashiwo_Contig8.11.1|Name=mRNA_H-akashiwo_Contig8.11.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=114bp SLQSEWRFLQRLIPGSSPCFKELDDVIARVFIPALVGRRVSDLEKRLFALback to top mRNA from alignment at H-akashiwo_Contig8:218135..218683+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig8.11.1 ID=mRNA_H-akashiwo_Contig8.11.1|Name=mRNA_H-akashiwo_Contig8.11.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=549bp|location=Sequence derived from alignment at H-akashiwo_Contig8:218135..218683+ (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig8:218135..218683+ >mRNA_H-akashiwo_Contig8.11.1 ID=mRNA_H-akashiwo_Contig8.11.1|Name=mRNA_H-akashiwo_Contig8.11.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=342bp|location=Sequence derived from alignment at H-akashiwo_Contig8:218135..218683+ (Heterosigma akashiwo CCMP452)back to top |