mRNA_H-akashiwo_Contig8.108.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig8.108.1
Unique NamemRNA_H-akashiwo_Contig8.108.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig8.108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig8contigH-akashiwo_Contig8:4900410..4900962 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size415
Hectar predicted targeting categoryother localisation
Exons2
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387981.5313642-CDS-H-akashiwo_Contig8:4900409..49006401681387981.5313642-CDS-H-akashiwo_Contig8:4900409..4900640Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig8 4900410..4900640 -
1681387981.5464084-CDS-H-akashiwo_Contig8:4900778..49008171681387981.5464084-CDS-H-akashiwo_Contig8:4900778..4900817Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig8 4900779..4900817 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387981.5606725-UTR-H-akashiwo_Contig8:4900817..49009621681387981.5606725-UTR-H-akashiwo_Contig8:4900817..4900962Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig8 4900818..4900962 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig8.108.1prot_H-akashiwo_Contig8.108.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig8 4900410..4900817 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig8.108.1

>prot_H-akashiwo_Contig8.108.1 ID=prot_H-akashiwo_Contig8.108.1|Name=mRNA_H-akashiwo_Contig8.108.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=90bp
MNCNTSTTAMHEEEVAPSAAILSTTCLKGSGHHWNQASSSAQKTTRGVLE
LVATTPPTHAVSLATAKMNFAKLLTVAPEVWPRATMFQV*
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mRNA from alignment at H-akashiwo_Contig8:4900410..4900962-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig8.108.1 ID=mRNA_H-akashiwo_Contig8.108.1|Name=mRNA_H-akashiwo_Contig8.108.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=553bp|location=Sequence derived from alignment at H-akashiwo_Contig8:4900410..4900962- (Heterosigma akashiwo CCMP452)
TGGTCAACTCGGCTGAAAGCGGGTCATATATACTCAAGCAGTCACTACTA
TTGGTGGTCGTCGTGAAAACACCAGCAAACAAACACGCAAACACGAGCGG
TTCGAAGGGGGAAAACAAGGAGCGACCTGTCCGCTTGTGTTGCAAATGAA
CTGTAACACGTCTACTACTGCAATGCACGAGGAGGTAAGGGGAGTGAAAC
TGCTATCTTGGGCCAGTAATCGATTTTACTGTTAGGGCTGCGGTTTGAAC
AAACGGCACAGCCTTATACATATTACTGCAAAGCTCACAACATTCCACTG
ACTCTTGAATTTCATCAAACAGGAGGTGGCTCCCTCAGCGGCAATATTAA
GCACAACATGCCTCAAAGGTTCCGGCCATCATTGGAACCAAGCTTCCTCT
TCAGCGCAAAAAACAACGCGGGGTGTGCTAGAATTGGTCGCCACTACACC
ACCAACTCATGCTGTTTCTCTTGCCACAGCCAAAATGAATTTTGCAAAGT
TGCTCACGGTTGCTCCAGAAGTGTGGCCAAGAGCGACCATGTTTCAGGTT
TGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig8:4900410..4900962-

>mRNA_H-akashiwo_Contig8.108.1 ID=mRNA_H-akashiwo_Contig8.108.1|Name=mRNA_H-akashiwo_Contig8.108.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=270bp|location=Sequence derived from alignment at H-akashiwo_Contig8:4900410..4900962- (Heterosigma akashiwo CCMP452)
ATGAACTGTAACACGTCTACTACTGCAATGCACGAGGAGGAGGTGGCTCC
CTCAGCGGCAATATTAAGCACAACATGCCTCAAAGGTTCCGGCCATCATT
GGAACCAAGCTTCCTCTTCAGCGCAAAAAACAACGCGGGGTGTGCTAGAA
TTGGTCGCCACTACACCACCAACTCATGCTGTTTCTCTTGCCACAGCCAA
AATGAATTTTGCAAAGTTGCTCACGGTTGCTCCAGAAGTGTGGCCAAGAG
CGACCATGTTTCAGGTTTGA
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