mRNA_H-akashiwo_Contig795.11.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig795.11.1
Unique NamemRNA_H-akashiwo_Contig795.11.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig795.11.1 vs. uniprot
Match: A0A7S4D4L2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4L2_HETAK)

HSP 1 Score: 106 bits (264), Expect = 5.720e-23
Identity = 56/172 (32.56%), Postives = 92/172 (53.49%), Query Frame = 1 
Query:  118 LQCFQRFRDET-DFCDIFFRVENSDFDLHSVVLATRMEDYIKAHTTTGRQMKGGGSNAEDRIIIDDLPGGSSSFREIVKFCYGDSSFTLNMENVASLHYAAGYFGMLGPENLSSRIDYFLEYHVLGDEVQSVANAMELYQSTVALEETHRLSNDFSRRCMQKIAAFISDSND 630
            LQC   FR E  +FCD+F  V+   FDLH +++A  M+ Y++ HT T +QM G GS   +RI++++  GG+S F +IV++CYG+ SF +   N A L+Y   YF M   E  S  +   ++ H+ G+++        L    + +E  H    + S   +  I++ +    D
Sbjct:    6 LQCPANFRKENNEFCDLFMSVDGKHFDLHRIIMAHSMKQYVQVHTRTAKQMDGAGSEPSNRILLENFVGGASVFEDIVQYCYGEDSFAVTDSNFAGLYYGEQYFQMSREEEGS--LYCLIQAHLFGNKIDP-QRLGHLCLEALEVEHKHGYPKELSSHILGLISSQMKSKAD 174
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BLAST of mRNA_H-akashiwo_Contig795.11.1 vs. uniprot
Match: UPI00053F6864 (BTB/POZ domain-containing protein At5g03250 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F6864)

HSP 1 Score: 56.6 bits (135), Expect = 1.040e-5
Identity = 47/157 (29.94%), Postives = 75/157 (47.77%), Query Frame = 1 
Query:  160 DIFFRVENSDFDLHSVVLATR---MEDYIKAHTTTGRQMKGGGSNAEDRIIIDDLPGGSSSFREIVKFCYGDSSFTLNMENVASLHYAAGYFGML---GPENLSSRIDYFLE--YHVLGDEVQSVANAMELYQSTVALEETHRLSNDFSRRCMQKIA 606
            D+   +  + F LH   L +R   +E  I+  T+T       GSN    + +DD+PGGS++F  + +FCYG     +N  NV SL  AA +  M    G  NL S+ + FL   +    D +Q++    ++ Q     E+ H +S     RC+  +A
Sbjct:   29 DVVIEIGEASFQLHKFPLISRSGLLEKRIEEFTSTED-----GSNCI--VKLDDIPGGSTTFELVTRFCYG-MKLEINPSNVVSLRCAAEFLEMTEDYGEGNLISQTEAFLSEVFSSWADSMQALETCEDVLQQA---EDAHVVS-----RCINSLA 169
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BLAST of mRNA_H-akashiwo_Contig795.11.1 vs. uniprot
Match: A0A1R3JW72_COCAP (BTB/POZ-like protein n=2 Tax=Magnoliopsida TaxID=3398 RepID=A0A1R3JW72_COCAP)

HSP 1 Score: 55.8 bits (133), Expect = 2.000e-5
Identity = 36/113 (31.86%), Postives = 59/113 (52.21%), Query Frame = 1 
Query:  160 DIFFRVENSDFDLHSVVLATR---MEDYIKAHTTTGRQMKGGGSNAEDRIIIDDLPGGSSSFREIVKFCYGDSSFTLNMENVASLHYAAGYFGM---LGPENLSSRIDYFLEY 480
            D+  +V +  F LH + + ++   +   + A T+T  +    GS+   +I++ DLPGGS SF+ +V FCYG     +   NVA L+ AA +  M       NL S+ + FL +
Sbjct:   81 DLIVQVGDVSFHLHKLAMVSKSGYLSRLVLARTSTEEEK---GSSRLIKIVLQDLPGGSKSFKSVVDFCYG-RKVDVTASNVAPLYCAANFLEMNEGFHQGNLISQTEAFLSF 189
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig795.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S4D4L2_HETAK5.720e-2332.56Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
UPI00053F68641.040e-529.94BTB/POZ domain-containing protein At5g03250 n=1 Ta... [more]
A0A1R3JW72_COCAP2.000e-531.86BTB/POZ-like protein n=2 Tax=Magnoliopsida TaxID=3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig795contigH-akashiwo_Contig795:176035..178383 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4538.ORGLA03G0074500.1
PFAMsBTB,NPH3
Model size696
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
GOsGO:0006950,GO:0006952,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0042742,GO:0043207,GO:0050896,GO:0051704,GO:0051707,GO:0098542
Exons5
Evalue5.44e-12
EggNOG OGs28MXB@1|root,2QUFV@2759|Eukaryota,37NZQ@33090|Viridiplantae,3GF0U@35493|Streptophyta,3KXE1@4447|Liliopsida,3I2Q8@38820|Poales
DescriptionBelongs to the NPH3 family
Cds size609
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig795.11.1prot_H-akashiwo_Contig795.11.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig795 176035..178296 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387978.7870245-CDS-H-akashiwo_Contig795:176034..1760781681387978.7870245-CDS-H-akashiwo_Contig795:176034..176078Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig795 176035..176078 -
1681387978.8021023-CDS-H-akashiwo_Contig795:176288..1764061681387978.8021023-CDS-H-akashiwo_Contig795:176288..176406Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig795 176289..176406 -
1681387978.8146462-CDS-H-akashiwo_Contig795:177161..1772761681387978.8146462-CDS-H-akashiwo_Contig795:177161..177276Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig795 177162..177276 -
1681387978.8260715-CDS-H-akashiwo_Contig795:177857..1779801681387978.8260715-CDS-H-akashiwo_Contig795:177857..177980Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig795 177858..177980 -
1681387978.836821-CDS-H-akashiwo_Contig795:178087..1782961681387978.836821-CDS-H-akashiwo_Contig795:178087..178296Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig795 178088..178296 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387978.8531232-UTR-H-akashiwo_Contig795:178296..1783831681387978.8531232-UTR-H-akashiwo_Contig795:178296..178383Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig795 178297..178383 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig795.11.1

>prot_H-akashiwo_Contig795.11.1 ID=prot_H-akashiwo_Contig795.11.1|Name=mRNA_H-akashiwo_Contig795.11.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=203bp
MEGSALTESILQCFQRFRDETDFCDIFFRVENSDFDLHSVVLATRMEDYI
KAHTTTGRQMKGGGSNAEDRIIIDDLPGGSSSFREIVKFCYGDSSFTLNM
ENVASLHYAAGYFGMLGPENLSSRIDYFLEYHVLGDEVQSVANAMELYQS
TVALEETHRLSNDFSRRCMQKIAAFISDSNDGFIEEFSGLLDRPSAASII
EV*
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mRNA from alignment at H-akashiwo_Contig795:176035..178383-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig795.11.1 ID=mRNA_H-akashiwo_Contig795.11.1|Name=mRNA_H-akashiwo_Contig795.11.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2349bp|location=Sequence derived from alignment at H-akashiwo_Contig795:176035..178383- (Heterosigma akashiwo CCMP452)
CTTTTTCAGAATTTTATAATTAGCTCCGGAGGAGGAAGGAATTAGAGCTG
CTAGAGTGCACTTCGATTCGAGCCAGCCAAATCCAAAATGGAAGGAAGTG
CTCTGACTGAATCGATTCTTCAATGTTTTCAGCGTTTCCGTGACGAAACA
GACTTCTGTGATATATTTTTCCGTGTAGAAAATTCAGATTTTGACCTCCA
TAGTGTTGTGTTGGCAACAAGAATGGAAGATTACATCAAGGCACACACCA
CCACTGGAAGGCAAATGAAAGGAGGTGGAAGCAACGCAGAGGACAGGTAT
TCTTGGAAATTGCCTTGGAATTCGAGCACATGTAATGTGAAAGCATCCCT
CGTGAACTTTGTTGAACCGTATATCTCTCCATATTGCCCCCCCCCCCAAA
TAGGATTATTATTGACGATCTCCCAGGCGGGTCCTCTTCATTCCGTGAAA
TTGTCAAGTTCTGTTACGGCGACTCCTCCTTCACTCTGAATATGGAAAAT
GTAGCATCACTTCACTACGCTGCAGGGTAAGGCAGAGTAGCCAAATGTTT
ACTATAATATAATATGTGCGACCACTGTAGTGTAAAGTGCTGTCATTGAG
GAAGGACAGAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA
GAAAGAAAGAAAGAAAGAAACAACGAAATGTTATAAGATTATGTGTACAT
AGTATGATTTTTAAACTCTCCATTCATTCATATACACATTGACAGCCTCC
TCTTCCCGGTGACACACTCCACTGTGTTTCTACATGTTGCCAAATTTTAA
CAGCCTCGTCAGTGCCATATGGTTCGGTAAAAATCCTTGACCACCCTTGG
GTCTAGACGGCCGGCCTATAGGAATTGTCCGTTTCTATTATCATGAATTA
TTATACTCGGGCTGACTTTTCTTTCAGCACTCACTATTCCTGGCCACGCA
ACAAGAAGAAAACAAAAGCAACAACAAATGTGCACATATTTTACCCCTCC
CAACAAGGGAAGCTTGCTTTTAGGGCTATCACGCCGAAAGTGAGTCATGA
GTGTAAGCAAAATCTTTCTTCGAATCAGTCTTCTGTTCAACATCTTTTGA
ATTTCAGGTACTTTGGTATGCTTGGTCCAGAGAACCTGTCGAGCCGGATC
GACTACTTCTTGGAATACCATGTACTGGGCGATGAGGTCCAGAGCGTTGC
AAACGCAATGGAGTTATACCAGGTGCACATTGCTCCAGGGCCAAGTTAAA
ACCACGACTTCAACAATAGCGAGTGTAAAAGAAGGTTGTGGATCTTGGAA
TGCTGGACAGCATTTTCCTATCCTTTTTTTTTTGCGCTTCTACCAGTACA
GAAGGAGGAGGGAGGAAAATGAGAGTAGTGGAATGATAACCATTACTTCT
TATGTTTGTCAGCTGCTTATTGGCGTTATCGGGTGGCTGCGCCGCATTTT
CCACATTTATGTGACTGGGTCGGACAAGGCCAACTTGGTTCACCACTTTG
TGACGACGGCATAACTTCATGCCGAAGCGCCGGGAGCTGGAGAGGCGAAA
GGCCTATTATTTTCCAGAAGAAAGAAGCTGAAGGGTTGCGTAAACCATAT
TATTGTCTCCCGAACACCAGTCAGCAGTTTTAGTCAAGAATTAAGAAAGA
AAAGAAAGAAAAAAAAGACAAGACAAGACAAGACAAGAAAATGCAAATGA
CATGGGTAGAGGTAGCAATAGCCTAGCTGAACTATTTTCTTCACTTTATG
CGTAAACTTATGTAGTAAACAAAAAAGAAGAAGAAAGTAGCTGAATGATG
ATTTGTCCACACTATCGATATAATCATTTTGAAACTGTCCTGTTGTATTG
TTATTATATATTACAGACAGAAGTGGCTGCTTTTCTTTTGTTTTGGTTCT
TTCTGTCCTCTTCATTACTGAAATGTTGCTTTTCTTTTATTGTGGATCCC
TGGTCATCACTGGATAAACCCATCCAGTCTACTGTGGCCCTGGAGGAGAC
CCACAGACTGTCAAATGATTTTAGCAGAAGGTGCATGCAGAAGATTGCAG
CATTTATCAGTGACAGCAATGATGGGTTCATCGAAGAATTTTCAGGTACT
TTGTTCATTGTGTGGTTTTCCAAGTGACTGGACCTTAAATTCAAATTACA
AAATCATAGTCATCATCAGTGTATGTGATGCTGGTTTTTATTCTCTTTTC
GGTCCTTTTTCTTTTACAAACTACAACGACTATCCCGGCTGCAATGTACA
CTCTTCAGCCTTTCATATCTCTATACTCTCTCTGTTGCCCTGTTTTCATC
ATCAGGTCTCCTTGACCGGCCATCAGCAGCCTCAATCATTGAGGTTTAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig795:176035..178383-

>mRNA_H-akashiwo_Contig795.11.1 ID=mRNA_H-akashiwo_Contig795.11.1|Name=mRNA_H-akashiwo_Contig795.11.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=609bp|location=Sequence derived from alignment at H-akashiwo_Contig795:176035..178383- (Heterosigma akashiwo CCMP452)
ATGGAAGGAAGTGCTCTGACTGAATCGATTCTTCAATGTTTTCAGCGTTT
CCGTGACGAAACAGACTTCTGTGATATATTTTTCCGTGTAGAAAATTCAG
ATTTTGACCTCCATAGTGTTGTGTTGGCAACAAGAATGGAAGATTACATC
AAGGCACACACCACCACTGGAAGGCAAATGAAAGGAGGTGGAAGCAACGC
AGAGGACAGGATTATTATTGACGATCTCCCAGGCGGGTCCTCTTCATTCC
GTGAAATTGTCAAGTTCTGTTACGGCGACTCCTCCTTCACTCTGAATATG
GAAAATGTAGCATCACTTCACTACGCTGCAGGGTACTTTGGTATGCTTGG
TCCAGAGAACCTGTCGAGCCGGATCGACTACTTCTTGGAATACCATGTAC
TGGGCGATGAGGTCCAGAGCGTTGCAAACGCAATGGAGTTATACCAGTCT
ACTGTGGCCCTGGAGGAGACCCACAGACTGTCAAATGATTTTAGCAGAAG
GTGCATGCAGAAGATTGCAGCATTTATCAGTGACAGCAATGATGGGTTCA
TCGAAGAATTTTCAGGTCTCCTTGACCGGCCATCAGCAGCCTCAATCATT
GAGGTTTAA
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