mRNA_H-akashiwo_Contig1251.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1251.2.1
Unique NamemRNA_H-akashiwo_Contig1251.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1251.2.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 613 bits (1580), Expect = 3.720e-215
Identity = 295/333 (88.59%), Postives = 318/333 (95.50%), Query Frame = 1
Query:  970 MELHDHLLSLGFQRSGHESCLYIRREGGRELMVAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALSKFGLDYLPACAAPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQCNPEAKHFEAAERAFRYLKGTQSEPLRLGGDLVLRAFSDSDFCSDRIDGKSVTGYVLFLGDAPILWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVVEDNSACIEWANDLLVSKKNRHFHVSYHLAKEQVSLGTIRMFFIKTHNQVADIFTK 1968
            MELHDHL SLGF+RSGHESCLYI R+GG ELMVAVYVDDLV+SGSS A+VS+FKQSLASKY LTDQGELTQILGIKVVRDKRNKCF+LSQTSFIKDAL+KFGLDYLPAC  P+DHTVDLTPTPGFKAELSDAN+YRSMVGTLAWVANWTRPELAFTVHKLQRTQ NPE KHFEA +RAFRYLKGTQSE LRLGGDLVLRAFSDSDFC+DR+DGKSVTGY+LFLGDAPI+WSSKLQGAVTTSTVEAEYLALRS+VKDIMWLR LL ++GCPQ EPTPVVEDNSAC+EWAND+LV+K+NRHFHVSYHLAKEQVSLGTIRMF+IKTH+QVADI TK
Sbjct:    1 MELHDHLESLGFKRSGHESCLYIHRDGGNELMVAVYVDDLVISGSSQAVVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTK 333          
BLAST of mRNA_H-akashiwo_Contig1251.2.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK)

HSP 1 Score: 441 bits (1135), Expect = 3.950e-149
Identity = 215/268 (80.22%), Postives = 235/268 (87.69%), Query Frame = 1
Query:  781 EFGVDYRQTYSPVVNAASLRLLLAISANKGYA-----------------------PPGFVDPEHPDKVWKLNKALYGLRQSPRIWYMELHDHLLSLGFQRSGHESCLYIRREGGRELMVAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALSKFGLDYLPACAAPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQCNPEAKHFEAAERAFRYL 1515
            +FG+D++QTYSPVVNAASLRLLLAISANKGYA                       PP +VDP+HP+KVWKLNKALYGL+QSPR+WYMELHDHL SLGF+RSGHESCLYI R+GG ELMVAVYVDDLV+SGSS A+VS+FKQSLASKY+LTDQGELTQILGIKVVRDKRNKCF+LSQTSFIKDAL+KFGLDYLPAC  P+DHTVDLTPTPGFKAELSDAN+YRSMVGTLAWVANWTRPELAFTVHKLQRTQ NPE KHFEA +RAFRYL
Sbjct:    1 KFGIDFQQTYSPVVNAASLRLLLAISANKGYAVDSLDISTAFLNGAMTDDVYVRQPPSYVDPQHPNKVWKLNKALYGLKQSPRVWYMELHDHLESLGFKRSGHESCLYIHRDGGNELMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYL 268          
BLAST of mRNA_H-akashiwo_Contig1251.2.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 379 bits (972), Expect = 1.530e-115
Identity = 204/502 (40.64%), Postives = 305/502 (60.76%), Query Frame = 1
Query:  571 SARLPQSPGEARRLPDWPEWRDALNGELSSITDKNTYTLVDRPPHANVIGTLSVLSKKSDADGHLVSH---------TQEFGVDYRQTYSPVVNAASLRLLLAISANKGYA-----------------------PPGFVDPEHPDKVWKLNKALYGLRQSPRIWYMELHDHLLSLGFQRSGHESCLY--IRREGGRELMVAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALSKFGLDYLPACAAPMDHTVDLTPTPGFKAELS--DANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQCNPEAKHFEAAERAFRYLKGTQSEPLRLGGDLVLRAFSDSDFCSDRIDGKSVTGYVLFLGDAPILWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVVEDNSACIEWANDLLVSKKNRHFHVSYHLAKEQVSLGTIRMFFIKTHNQVADIFTK 1968
            S + P +   A+R PDW  WR+A+  E  S+   N + LVD+P  AN++G   +L+KK DADG+L  +         +Q  GVDY  T+SPVV++ASLR +L I+A++                          P G+  P    KV KL K+LYGL+Q+P+ WY  L+  LL  G+ R+G++SC+Y  +   GG+ L ++VYVDD+V++ S  + +S  K++++  Y+++D GE+  ILGIKV RD+  +   LSQ SFI++A  KF +        P++  +D+         LS  +A  +RS+VGT+ W+A WT PE+A+++H L +   +P A    A+    RYL  T+ + + LGG L L A++D+DFCS+R  G+S +G+ +FLG +PI+WSS++Q  VT +T EAEY++LR++V D+MWL+ LL  LG  +Q   P+ EDN ACI WAND  VSK  RH HVSYH  KE V    I + ++ T +Q+AD+FTK
Sbjct:  480 SEQNPWNLAHAQRSPDWMRWREAVADEYDSLLRHNVWELVDKPSGANIVGCRWILAKKYDADGNLSKYKARLCAQGYSQIEGVDYTNTFSPVVSSASLRTVLTIAASEDMEIHCMDIKTAFLHGKLEEDIYMKQPEGYEVPGMEHKVLKLKKSLYGLKQAPKCWYQNLNGFLLQQGYTRNGYDSCVYSKVSSTGGKTL-ISVYVDDIVLASSDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGY-KQGCVPIYEDNKACITWANDETVSKSARHIHVSYHYTKEMVQSKEIEVKYVDTKHQIADVFTK 979          
BLAST of mRNA_H-akashiwo_Contig1251.2.1 vs. uniprot
Match: A0A438J1J0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=4 Tax=Vitis vinifera TaxID=29760 RepID=A0A438J1J0_VITVI)

HSP 1 Score: 327 bits (837), Expect = 2.250e-94
Identity = 221/694 (31.84%), Postives = 345/694 (49.71%), Query Frame = 1
Query:   22 PNGNSIAETSIKVCCQRMRASLHSSNLSGSYWSEALLHSVETTSRLPTKGLPNHISPYESWYGHRPSILHLRSFGASCYAYLPVELRPGKLSSKGVLHKFLSYG-SSTGYS----DSGASSSSHD-----DSSANSLPSVNLPAPPVSSPSTKNLSPSGTGRXXXXXXXXXXXXXXXXXXSRTANYARKLRRTSARLPQSPGEARRLPDWPEWRDALNGELSSITDKNTYTLVDRPPHANVIGTLSVLSKKSDADGHL---------VSHTQEFGVDYRQTYSPVVNAASLRLLLAISANKGYA-----------------------PPGFVDPEHPDKVWKLNKALYGLRQSPRIWYMELHDHLLSLGFQRSGHESCLYIRREGGRELMVAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALSKFGLDYLPACAAPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQCNPEAKHFEAAERAFRYLKGTQSEPLRLG--GDLVLRAFSDSDFCSDRIDGKSVTGYVLFLGDAPILWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVVEDNSACIEWANDLLVSKKNRHFHVS-YHLAKEQVSLGTIRMFFIKTHNQVADIFTK 1968
            P  N ++E   +   +  R  LH   L    W+EA   +V   +RLPT+ L    +P+E+W+G++P + +LR+FG  C++Y+P +++  KL  K     F+ Y  SS  Y      +G    S D     D   N   S+ +  P V     +++                         S +  Y R            P E        +W +A+  EL  I   +T+ LVDRP H  VIG   V   K +ADG +           ++Q FGVD+ +T++PV    ++R+LLA++A KG+                        P GF      +KV+ L KALYGL+Q+PR WY  + +HL SLGF +S  E+ LY++      ++V+VYVDDL+V+GS+  LV +FK  +   +++TD G ++  LG++V +D      ++SQ  + K+ L+KF +D     + PM+     +   G   E  D + YRS++G L ++   TRP++ F+V  L R        HF+AA+R  RY+KGT +  ++     +  L  +SDSD+     D +S TG+    G     WSSK Q  +  ST EAEY+A  ++V   +W+R +LADL   Q EPT +  DN A I  +ND +   K +HF +  YHL +EQ   G +++ + KT +Q+AD+ TK
Sbjct:  609 PQQNGVSERKNRSIMEMTRCMLHEKELPKKLWAEAANTAVFLLNRLPTRVLQKK-TPFEAWFGYKPDLKNLRTFGCLCFSYVP-QVKRDKLDKKAEPGVFIGYSNSSKAYRIFQPQNGKILVSRDVKFMEDRQWNWEESIKMQLPKVPQYFDEDID----------------DVPVRGIRSLSDVYERNNVAVF-----EPAEFEEAEKDDKWIEAMKEELRMIEKNDTWELVDRPQHRKVIGVKWVYRTKLNADGSVNKYKARLVVKGYSQVFGVDFSETFAPVARLDTIRMLLALTAQKGWKTYQLDVKSAFLNGYLQEEIYVEQPEGFQVKGQEEKVYLLKKALYGLKQAPRAWYSRIDEHLQSLGFVKSPSEATLYVKGTDANLIVVSVYVDDLLVTGSNEKLVKEFKAEMLKVFEMTDLGLMSYFLGMEVKQDHDG--VFISQKKYAKEILNKFHMDDCKRTSTPMNQKEKFSKDDG--TEKVDESQYRSLIGCLMYLTA-TRPDIMFSVSLLSRFMHCASEVHFQAAKRIVRYIKGTTNYGIKYSYYQNFKLHGYSDSDWAGSIDDMRSTTGFCFNFGSGIFSWSSKKQDVIAQSTAEAEYVAANATVNQAIWIRKILADLHMKQNEPTQIHVDNQAAIAISNDSVFHGKTKHFKIKLYHLREEQKD-GEVKLLYCKTEDQIADVLTK 1273          
BLAST of mRNA_H-akashiwo_Contig1251.2.1 vs. uniprot
Match: A0A438IYC9_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438IYC9_VITVI)

HSP 1 Score: 315 bits (806), Expect = 5.630e-94
Identity = 217/695 (31.22%), Postives = 328/695 (47.19%), Query Frame = 1
Query:    7 TGRSNPNGNSIAETSIKVCCQRMRASLHSSNLSGSYWSEALLHSVETTSRLPTKGLPNHISPYESWYGHRPSILHLRSFGASCYAYLPVELRPGKLSSKGVLHKFLSYGSSTGYSDSGASSSSHDDSSANSLPSVNLPAPPVSSPSTKNLSPSGTGRXXXXXXXXXXXXXXXXXXSRTANYARKLRRTSARLPQ-------SPGEARRLPDWPEWRDALNGELSSITDKNTYTLVDRPPHANVIGTLSVLSKKSDADGHLVSH---------TQEFGVDYRQTYSPVVNAASLRLLLAISANK---------------GYA--------PPGFVDPEHPDKVWKLNKALYGLRQSPRIWYMELHDHLLSLGFQRSGHESCLYIRREGGRELMVAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALSKFGLDYLPACAAPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQCNPEAKHFEAAERAFRYLKGTQSEPLRLGG--DLVLRAFSDSDFCSDRIDGKSVTGYVLFLGDAPILWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVVEDNSACIEWANDLLVSKKNRHFHVSYHLAKEQVSLGTIRMFFIKTHNQVADIFTK 1968
            T    P  N + E   +   +  R  LH   L  S+W+EA   +V   +RLPTK L    +P+E+W+G++P +++L++FG  C++Y+P +++  KL  K     F+ Y S++                          A  +  P    +  S   +                          +  RT   + Q        P       +   WR A+  EL+ I   NT+ LVDRP H   IG   V   K ++DG +  H          Q FGVD+ +T++PV    ++R+LLA++A +               GY         P GF      +KV+ L KALYGLRQ+PR WY  +  HLL+LGF +S  E  LYI++     L+V++YVDDL+V+GS+   V+ FK  +   +++TD GE++  LG++V   K+N+ F + Q  + K+ L KF ++   + + PM+         G  AE  D  +YRSM+G L ++   TRP++   V  L R        HF+AA+R  RY+KGT    ++           FSDSD+     D +S +GY    G     WSS+ Q  V  ST EAEY+A  ++V   +WLR LL DL   Q+  T V  DN A I  AND +   K +HF +  +  +E    G I++ +  T +Q ADI TK
Sbjct:   40 TAPYTPQQNGVVERKNRTIMEMTRCLLHEKELPKSFWAEAANTAVFLLNRLPTKALQKQ-TPFEAWFGYKPMLMNLKTFGCLCFSYVP-QVKRDKLDKKSEPGIFIGYSSTS-------------------------KAYRIYLPQNNKIVVSRDVKFLETEKWSWDEQNQQYVDEDVDELPVRGFRTLFDIYQRCNIAVLEPAGFVEAAENKRWRVAMQEELNMIDKNNTWELVDRPSHKKPIGVKWVYRTKLNSDGSINKHKARLVVKGYAQMFGVDFSETFAPVARLDTIRMLLALAAQRKWKIYQLDVKSAFLNGYLEEEIFVEQPEGFAIKGKEEKVYLLKKALYGLRQAPRAWYSRIDTHLLTLGFHKSLSEFTLYIKKIEEDILIVSLYVDDLLVTGSNAGFVNKFKAEMEQVFEMTDLGEMSYFLGMEV-HQKQNEIF-ICQQKYAKEILKKFKMEECKSTSTPMNQKEKFCKEDG--AEKVDEGLYRSMIGCLMYLTA-TRPDIMHAVSLLSRYMHCASEIHFQAAKRVIRYVKGTVDYGIKFSQVQSFNFHGFSDSDWAGCVDDMRSTSGYCFSFGSGVSSWSSRKQEVVAQSTAEAEYIAAVAAVNQALWLRKLLTDLDMKQEVSTKVFVDNQATISIANDPVFHGKTKHFKIKLYFLREVQKEGDIQLVYCNTESQNADILTK 702          
BLAST of mRNA_H-akashiwo_Contig1251.2.1 vs. uniprot
Match: A0A7S3Y3B6_HETAK (Hypothetical protein (Fragment) n=6 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3B6_HETAK)

HSP 1 Score: 305 bits (781), Expect = 5.760e-94
Identity = 161/296 (54.39%), Postives = 193/296 (65.20%), Query Frame = 1
Query:  583 PQSPGEARRLPDWPEWRDALNGELSSITDKNTYTLVDRPPHANVIGTLSVLSKKSDADGHLVSH---------TQEFGVDYRQTYSPVVNAASLRLLLAISANKGYA-----------------------PPGFVDPEHPDKVWKLNKALYGLRQSPRIWYMELHDHLLSLGFQRSGHESCLYIRREG--GRELMVAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALSKFGLDYLPACAAPMDHTVDLTPTPGFKAELSDAN 1368
            P  P ++RRLPD  E+  A+  EL S+       LVD PP A+ IGT  +LSKK DADG+L  +         TQ  GVD+  TYSPV+ A SLRL+L+I+ANKG+A                       PPGFVD +HP KVWKL KALYGLRQSPR+WY  LH+ LL   F RS +ESCLY R+    G + MVAVYVDDLV+S + P++VS  K S  S++ +TD G LT ILGIKV RD  NKCFYLSQ SF++DA+SKFGLDYLPAC  PM +  DLTPTPGFKA L DAN
Sbjct:  114 PYGPNQSRRLPDKEEYDQAMLKELDSMESHGVKELVDLPPGAHAIGTRWILSKKFDADGNLQKYKARLVAQGFTQREGVDFSTTYSPVIAAPSLRLMLSIAANKGHAVEALDISTAFLNSDIDGDVYVKQPPGFVDKDHPHKVWKLKKALYGLRQSPRLWYNTLHEFLLQQNFVRSDYESCLYTRKNSVTGEDTMVAVYVDDLVLSSNIPSVVSSLKSSFVSRFSITDLGPLTSILGIKVSRDHTNKCFYLSQASFVRDAISKFGLDYLPACRTPMTNATDLTPTPGFKASLPDAN 409          
BLAST of mRNA_H-akashiwo_Contig1251.2.1 vs. uniprot
Match: A0A2I0B6L3_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0B6L3_9ASPA)

HSP 1 Score: 320 bits (820), Expect = 4.210e-93
Identity = 209/688 (30.38%), Postives = 323/688 (46.95%), Query Frame = 1
Query:    7 TGRSNPNGNSIAETSIKVCCQRMRASLHSSNLSGSYWSEALLHSVETTSRLPTKGLPNHISPYESWYGHRPSILHLRSFGASCYAYLPVELRPGKLSSKGVLHKFLSYGSSTGYSDSGASSSSHDDSSANSLPSVNLPAPPVSSPSTKNLSPSGTGRXXXXXXXXXXXXXXXXXXSRTANYARKLRRTSARLPQSPGEARRLPDWPEWRDALNGELSSITDKNTYTLVDRPPHANVIGTLSVLSKKSDADGHLVSH---------TQEFGVDYRQTYSPVVNAASLRLLLAISANKGYA-----------------------PPGFVDPEHPDKVWKLNKALYGLRQSPRIWYMELHDHLLSLGFQRSGHESCLYIRREGGRELMVAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALSKFGLDYLPACAAPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQCNPEAKHFEAAERAFRYLKGTQSEPL--RLGGDLVLRAFSDSDFCSDRIDGKSVTGYVLFLGDAPILWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVVEDNSACIEWANDLLVSKKNRHFHVSYHLAKEQVSLGTIRMFFIKTHNQVADIFTK 1968
            T    P  N  AE   +   +   A +    L   +W+EA+  +V   +R PTK L + I+P+E+W   +PS+ HL+ FG+ C+  +P E R  K   +     FL Y + T                                   K                            +  NY                EA+   D  EW+DA+  E+  I    T+TLV RPP   +IG   V   K ++DG +  +         +Q+ G DY +T++PV    ++R+L A++A + +                        PPGF      DKV KL+KALYGL+Q+PR W  E+    L  GFQ+S +E+ LY   + G  L++++YVDDL+V+G    L+ +FK  + SKY+++D G+L   LG++V   + +K  ++SQ ++I++ L +F ++   A   P+  +  L    G  A  +++ +YRS++G+L +V   +RP+L F    L R    P  KHF  A+R  RYLKGT    L  R  GD  L  F DSD+     D KS +GY+ FL  A   W SK Q  V  S+ EAEY+A+  +   +MWL+ +LADLG    E T +  DN++ +  A + +   + +H  + +H  ++ V  G +   F  T NQ+ADI TK
Sbjct:  423 TAPYTPQQNGTAERKNRTLVEMATAMMEEKGLPKIFWAEAISTAVYLQNRCPTKALKD-ITPFEAWNSFKPSVSHLKIFGSICFVQVPTEKRI-KFDRRSTKCIFLGYDART-----------------------------------KGYRAYDVENKSLIVSRDVIFDENSAWNWKQTNYE---------------EAK---DQKEWQDAMKEEIHMIQKNKTWTLVPRPPGKQIIGVKWVYKIKYNSDGTVQKNKARLVAKGFSQKAGEDYSETFAPVARMETIRILFAVAAMRRWIIHHLDVKSAFLNGMLEEDVYCNQPPGFEVDGEEDKVLKLHKALYGLKQAPRAWNAEIDRFFLQNGFQKSCNEATLYTLNQNGHILIISIYVDDLLVTGDDEGLIQNFKDQMKSKYEMSDMGQLRYFLGLEV--HQSSKGIFISQKNYIQNVLKRFRMNECKAIDTPLSTSDKLKKEDG--APEANSEIYRSLIGSLLYVTI-SRPDLMFAASLLSRYMHQPSKKHFSTAKRVLRYLKGTIDHGLFYRSEGDCQLWGFCDSDWAGCVDDSKSTSGYIFFLNGAICSWMSKKQSVVAQSSAEAEYIAMAKATSQLMWLKRILADLGVKVDEKTVIYCDNTSAMAIAKNPVFHDRTKHIQIKFHFIRDAVKEGLVEFKFCSTENQLADILTK 1050          
BLAST of mRNA_H-akashiwo_Contig1251.2.1 vs. uniprot
Match: A0A498M2F0_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498M2F0_LABRO)

HSP 1 Score: 311 bits (798), Expect = 1.600e-92
Identity = 205/697 (29.41%), Postives = 339/697 (48.64%), Query Frame = 1
Query:   22 PNGNSIAETSIKVCCQRMRASLHSSNLSGSYWSEALLHSVETTSRLPTKGLPNHISPYESWYGHRPSILHLRSFGASCYAYLPVELRPGKLSSKGVLHKFLSYGSST-GYSDSGASSSSHDDSSANSLPSVNLPAPPVSSPSTKNLSPSGTGRXXXXXXXXXXXXXXXXXXSRTANYARKLRR-------------TSARLPQSPGEARRLPDWPEWRDALNGELSSITDKNTYTLVDRPPHANVIGTLSVLSKKSDADGHLVSH---------TQEFGVDYRQTYSPVVNAASLRLLLAISANKGYA-----------------------PPGFVDPEHPDKVWKLNKALYGLRQSPRIWYMELHDHLLSLGFQRSGHESCLYIRREGGRELMVAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALSKFGLDYLPACAAPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQCNPEAKHFEAAERAFRYLKGTQSEPLRLGGDLVLRA--FSDSDFCSDRIDGKSVTGYVLFLGDAPILWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVVEDNSACIEWANDLLVSKKNRHFHVSYHLAKEQVSLGTIRMFFIKTHNQVADIFTK 1968
            P  N +AE   K   + +R+ L  + L   +W+EAL  +V   +R PTK +   ++P+E+W G +P + HLR FG + YA++P + R  KL  K      L YG+ T GY         +D   A    S ++     +    K    +  G                    +    + +LR+                  P++  +    PD  +W++A+  E+ S+   N + LV+ P     +G+  V   K DADG    H         +Q+FG DY +T+SPVV   S+R ++A +   G                         P GFV       V KLN+++YGL+QSPR W + L + L  +GF ++  + C+Y    G    ++AVYVDD++++G S   + + K+ LA  +++ D GELT  LG+K+++       ++ Q ++ ++ L KFG++     + P+D    L       +E+ D   ++S VG+L +++  TRP++A+ V+ + R    P  +H+ A +R  RYLKGT +  L    D       FSD+D+  D+ D KS++GY+  +  A + W SK Q  V  ST EAEY+AL S+ ++ +W+R L+ DL   Q  PT + EDN + I  A +     + +H  + YH  +E+++ G I + +  T + VAD+FTK
Sbjct:   45 PEQNGVAERMNKTLMETVRSMLADAKLPQKFWAEALSTAVYLRNRSPTKSVKG-MTPFEAWTGEKPKVDHLRIFGCTVYAHVPKDERK-KLDPKAKKCILLGYGTETKGYR-------LYDSKLAKVFFSRDVIFNESNHAFEKEPVANEDGAVNRYVEFDCQEPDNEESPEQKVQRSERLRKPPDYYGEWVTVASNPTTEPKTVKDVLSSPDKAKWKEAMEKEMESLYANNVWNLVELPKGRKAVGSKWVFKVKVDADGTFERHKARLVAQGFSQKFGSDYDETFSPVVRFESVRTIIAQAVQYGLKLHQMDVKTAFLNGELKEEVYMQQPEGFVVKGKEHLVCKLNRSIYGLKQSPRCWNIVLDEQLKKMGFVQTTGDPCIYTAATG-EMFIIAVYVDDILLAGCSDKRMMEVKKMLAKHFEIKDMGELTHFLGVKIIQKPETGEIWMGQATYAENVLKKFGMENSKPVSTPVDINTKLVKHSD-DSEVMDPKQFQSAVGSLLYLSTRTRPDIAYAVNNVARFCAKPTKQHWTAVKRIMRYLKGTLNLGLLYNKDKPKECIGFSDADWAGDQNDRKSMSGYMFQISGAAVSWRSKKQTCVALSTAEAEYMALASAAQEAVWMRQLMTDLKVNQAGPTVMFEDNQSAICMAKNSQFHGRAKHIDIKYHFIREKIAGGVIDLQYCNTDDMVADMFTK 730          
BLAST of mRNA_H-akashiwo_Contig1251.2.1 vs. uniprot
Match: A0A8J5ZME6_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5ZME6_9ROSI)

HSP 1 Score: 311 bits (796), Expect = 7.140e-92
Identity = 221/692 (31.94%), Postives = 342/692 (49.42%), Query Frame = 1
Query:   22 PNGNSIAETSIKVCCQRMRASLHSSNLSGSYWSEALLHSVETTSRLPTKGLPNHISPYESWYGHRPSILHLRSFGASCYAYLPVELRPGKLSSKGVLHKFLSYGSST-GY-----SDSGASSSSHDDSSANSLPSVNLPAPPV--SSPSTKNLSPSGTGRXXXXXXXXXXXXXXXXXXSRTANYARKLRRTSARLPQSPGEARRLPDWPEWRDALNGELSSITDKNTYTLVDRPPHANVIGTLSVLSKKSDADGHL---------VSHTQEFGVDYRQTYSPVVNAASLRLLLAISANKGYA-----------------------PPGFVDPEHPDKVWKLNKALYGLRQSPRIWYMELHDHLLSLGFQRSGHESCLYIRREGGRELM-VAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALSKFGLDYLPACAAPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQCNPEAKHFEAAERAFRYLKGTQSEPL--RLGGDLVLRAFSDSDFCSDRIDGKSVTGYVLFLGDAPILWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVVEDNSACIEWANDLLVSKKNRHFHVSYHLAKEQVSLGTIRMFFIKTHNQVADIFTK 1968
            P  N + E   +      R  L  S L  ++W+EA+  SV   +RLPT  + +  +P+E+W+G +P++ HL+ FG  CYA++PVE R  KL  + V   F+ Y S+  GY     S  G   S       + + S N     +     S  NL P+                      +RT       +R +A L +       + D   W+ A+  EL  I    T+ LV+RP H  VIG   V   K +ADG L           ++Q++G+D+ +T++PV    +++LL A++A K +                        P GF      DKV++L KALYGL+Q+PR WY  +  +L  LGF++S  E+ LY++R  G  L+ V++YVDDL+V+GS   L+++FK+ +   +++TD G +T  LG++V  ++ ++  ++SQ  F    LSKF +        P+     L+ +     E  D   YRS+VG L ++   TRP++ F V  L R        HF+AA+R  RY+KGT +  +  +   +L L  +SDSD+     D KS +GY   LG     WSSK Q  V  ST EAEY+A  ++V   +WLR LL+DL   Q E T ++ DN + +  A + +   K +HF +  H  +E    G I + +  +  Q+ADI TK
Sbjct:   88 PQQNGVCERKNRTVLNMARCLLFQSKLPSNFWAEAVNTSVYLLNRLPTHAVKDK-TPFEAWHGLKPTVSHLKVFGCVCYAHIPVEKR-NKLEERAVPVIFVGYSSTKKGYRVYNPSTKGILVSRDVKFDEDKIWSWNGDNAKLFEEDQSNDNLEPA------EDEPSNEDFDDTPVRGTRTIEDI--YQRCNAALLEPSDYEEAVKD-KHWKKAMEAELDMIHKNETWELVNRPDHQKVIGVKWVFRTKYNADGSLNKYKARLVVKGYSQQYGIDFMETFAPVARLDTIKLLFALAAQKDWKVHQLDVKSAFLNGFLREEIFIEQPEGFKVQGQEDKVYRLKKALYGLKQAPRAWYDRIDTYLSRLGFEKSVSEATLYVKRLKGETLLIVSLYVDDLLVTGSKEELINEFKEQMLKVFEMTDLGVMTYFLGMEV--NQSDQGIFISQHIFALKILSKFCMANCKPVNTPVAQGEKLSRSES--VERVDEKEYRSLVGCLLYLTA-TRPDIMFGVSLLSRFMHCCNVTHFKAAKRILRYVKGTLNHGVMFKKEKELKLIGYSDSDWAGSVDDMKSTSGYFFTLGSGVFCWSSKKQQTVAQSTAEAEYIAAAAAVNQAIWLRKLLSDLNEEQSEATEIMVDNQSAVAIAKNPVFHGKTKHFKIKLHFVRETEQSGEISLIYCSSQEQLADILTK 763          
BLAST of mRNA_H-akashiwo_Contig1251.2.1 vs. uniprot
Match: A5B0R8_VITVI (Integrase catalytic domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5B0R8_VITVI)

HSP 1 Score: 312 bits (800), Expect = 1.540e-91
Identity = 207/687 (30.13%), Postives = 332/687 (48.33%), Query Frame = 1
Query:   22 PNGNSIAETSIKVCCQRMRASLHSSNLSGSYWSEALLHSVETTSRLPTKGLPNHISPYESWYGHRPSILHLRSFGASCYAYLPVELRPGKLSSKGVLHKFLSYGSST-GYSDSGASSSSHDDSSANSLPSVNLPAPPVSSPSTKNLSPSGTGRXXXXXXXXXXXXXXXXXXSRTANYARKLRRTSARLPQSPGEARRLPDWPEWRDALNGELSSITDKNTYTLVDRPPHANVIGTLSVLSKKSDADGHLVSH---------TQEFGVDYRQTYSPVVNAASLRLLLAISANKGY-----------------------APPGFVDPEHPDKVWKLNKALYGLRQSPRIWYMELHDHLLSLGFQRSGHESCLYIRREGGRELMVAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALSKFGL-DYLPACAAPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQCNPEAKHFEAAERAFRYLKGTQSEPLRLG----GDLVLRAFSDSDFCSDRIDGKSVTGYVLFLGDAPILWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVVEDNSACIEWANDLLVSKKNRHFHVSYHLAKEQVSLGTIRMFFIKTHNQVADIFTK 1968
            P  N ++E   +   +  R  L    +  ++W+EA+  SV   +RLPTK L N  +PYE WYG +P + HL+ FG+ CY ++P E +  KL S+      + YG+ST GY      ++         + S N+    +++   KN   + +                     R       + +  +     P       D   WR A+  EL  I    T+ LV+RP +  VIG   V   K ++DG +  H          Q++GVDY++T++PV    ++RLL  ++A   +                        P G V P   D V+ L KALYGL+Q+PR WY  +  HL  LGF RS  E+ LY++    + L++++YVDD++V+G+ P L+  FK  +   +++TD G +   LG++V++       ++ Q  +  D L KF + DY P  + PM     L+   G  +E  +  +YRS++G+L ++   +RP++ F V  L R   +P  KHF AA+R  RY+KGT    ++       DL L  +S+SD+     D +S +GY+  LG     WS K Q     STVEAEY+A  S++   +WL+ +L DLG  Q E T ++ DN + +    + +   + +H  + YH  +E      + +    + NQ+ DIFTK
Sbjct:  188 PQQNGVSERKNRTVMEMARCLLFEKKMPSNFWAEAVNTSVYLLNRLPTKSLKNK-TPYEEWYGVKPFVNHLKIFGSICYYHVP-EPKRSKLDSRAQKGILIGYGTSTKGYRIFCLQTNKV-------VLSRNVKVDEMATWDCKNKKYAQSDVDFNNHEDFQTSKSVDDFPVRGIRSLEDIYQRCSLAITEPTSYVEAKDSEAWRRAMQEELKMINKNETWQLVERPKNHKVIGVKWVFKTKLNSDGSICKHKAKLVVKGYAQQYGVDYKETFAPVARYDTIRLLFVLAAQNSWHIHQLDVKSAFLNGFVDKEIYVEQPDGVVAPSKEDYVYLLRKALYGLKQAPRAWYETMDKHLTKLGFVRSQSEATLYVKTNDVQLLIISLYVDDMLVTGNQPKLIQSFKDEMNKVFEMTDLGAMKYFLGMEVMQSCSR--IFICQQKYAMDMLKKFKMQDYKPV-STPMTTNEKLSKDDG--SEKINEGLYRSLIGSLLYLTA-SRPDILFAVSVLSRFMHSPSEKHFSAAKRVLRYIKGTIDLGVQFSKSAEDDLKLLGYSNSDWGGCVDDSRSTSGYLFSLGLGCFTWSLKKQETTAQSTVEAEYIAAASAINQALWLKKILKDLGQEQVEATNIMCDNISAVSILKNPVFHGRTKHIKIKYHFIREVQQSNEVLLVHCSSDNQLVDIFTK 859          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1251.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DD78_HETAK3.720e-21588.59Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y6S2_HETAK3.950e-14980.22Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y1P1_HETAK1.530e-11540.64Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A438J1J0_VITVI2.250e-9431.84Retrovirus-related Pol polyprotein from transposon... [more]
A0A438IYC9_VITVI5.630e-9431.22Retrovirus-related Pol polyprotein from transposon... [more]
A0A7S3Y3B6_HETAK5.760e-9454.39Hypothetical protein (Fragment) n=6 Tax=Heterosigm... [more]
A0A2I0B6L3_9ASPA4.210e-9330.38Retrovirus-related Pol polyprotein from transposon... [more]
A0A498M2F0_LABRO1.600e-9229.41Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A8J5ZME6_9ROSI7.140e-9231.94Integrase catalytic domain-containing protein n=1 ... [more]
A5B0R8_VITVI1.540e-9130.13Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1251contigH-akashiwo_Contig1251:47870..50250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog3750.XP_008337255.1
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size1968
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons4
Evalue6.49e-83
EggNOG OGsCOG2801@1|root,KOG4197@1|root,KOG0017@2759|Eukaryota,KOG4197@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta
DescriptionMitochondrial protein
Cds size1968
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387133.699119-CDS-H-akashiwo_Contig1251:47869..482151681387133.699119-CDS-H-akashiwo_Contig1251:47869..48215Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1251 47870..48215 +
1681387133.71006-CDS-H-akashiwo_Contig1251:48457..486891681387133.71006-CDS-H-akashiwo_Contig1251:48457..48689Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1251 48458..48689 +
1681387133.7187548-CDS-H-akashiwo_Contig1251:48791..490891681387133.7187548-CDS-H-akashiwo_Contig1251:48791..49089Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1251 48792..49089 +
1681387133.7276077-CDS-H-akashiwo_Contig1251:49158..502501681387133.7276077-CDS-H-akashiwo_Contig1251:49158..50250Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1251 49159..50250 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1251.2.1prot_H-akashiwo_Contig1251.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1251 47870..50250 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1251.2.1

>prot_H-akashiwo_Contig1251.2.1 ID=prot_H-akashiwo_Contig1251.2.1|Name=mRNA_H-akashiwo_Contig1251.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=656bp
LPTGRSNPNGNSIAETSIKVCCQRMRASLHSSNLSGSYWSEALLHSVETT
SRLPTKGLPNHISPYESWYGHRPSILHLRSFGASCYAYLPVELRPGKLSS
KGVLHKFLSYGSSTGYSDSGASSSSHDDSSANSLPSVNLPAPPVSSPSTK
NLSPSGTGRGGGSSVSQTNARLRRRARSRTANYARKLRRTSARLPQSPGE
ARRLPDWPEWRDALNGELSSITDKNTYTLVDRPPHANVIGTLSVLSKKSD
ADGHLVSHTQEFGVDYRQTYSPVVNAASLRLLLAISANKGYAPPGFVDPE
HPDKVWKLNKALYGLRQSPRIWYMELHDHLLSLGFQRSGHESCLYIRREG
GRELMVAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKV
VRDKRNKCFYLSQTSFIKDALSKFGLDYLPACAAPMDHTVDLTPTPGFKA
ELSDANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQCNPEAKHFEAAER
AFRYLKGTQSEPLRLGGDLVLRAFSDSDFCSDRIDGKSVTGYVLFLGDAP
ILWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPV
VEDNSACIEWANDLLVSKKNRHFHVSYHLAKEQVSLGTIRMFFIKTHNQV
ADIFTK
back to top

mRNA from alignment at H-akashiwo_Contig1251:47870..50250+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1251.2.1 ID=mRNA_H-akashiwo_Contig1251.2.1|Name=mRNA_H-akashiwo_Contig1251.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2381bp|location=Sequence derived from alignment at H-akashiwo_Contig1251:47870..50250+ (Heterosigma akashiwo CCMP452)
CTGCCTACGGGTAGGTCGAACCCGAACGGCAACAGCATCGCTGAGACCTC TATTAAAGTCTGTTGTCAGAGAATGCGTGCTTCTTTGCACTCCAGCAACC TCTCTGGTTCCTATTGGTCTGAAGCCCTTCTTCATTCCGTTGAAACGACC AGTCGGTTGCCGACAAAGGGTCTGCCCAATCACATCTCTCCTTATGAGTC GTGGTATGGTCATAGACCTTCCATCCTTCATCTTAGGTCTTTCGGTGCTT CTTGCTATGCCTACCTCCCTGTCGAGCTTCGTCCTGGCAAGCTCTCCTCT AAGGGAGTTCTTCACAAGTTTCTCTCCTATGGCTCCAGCACGGGGTGTAT CGCCTCTTGTCGCCCAAGAATAAGGTCGTCCTCACTAAATTCGTCGTTTT TGACGAAACGTCAGTCTTTTCGAAATCTTCTCTTTCTGATGACGACACTT CCAATCACCCAGCTGAATCTTCCTCTTCTGATAGCGAAATTTCAAATAAT TCGTCTACTTCTGGTGACGTTCTCCCCCTGCCACGGGAGTCGTGATCCAA TTCTCAACATTCGTCATCGAATTCTTCTGTCCAATCAGATTCTGATTCTG GTGCTTCTTCCTCCTCCCATGATGACTCGTCAGCGAATTCGTTGCCGTCA GTGAATCTGCCTGCTCCTCCTGTCTCCTCTCCCTCCACCAAGAACCTGTC GCCTTCTGGTACTGGTCGTGGTGGTGGTTCTTCGGTCTCTCAAACGAATG CGCGTCTTCGTCGTCGTGCCAGGTCTCGTACTGCAAACTATGCACGCAAA CTTCGCAGAACTTCTGCACGGTTTTAAAGCGCAAAACATCGGCAGCCCAT CTCGATCCGTGAGCTTCAGAATATGAGCAATGCCTTTGCCTTTcTCGGTA CCCATGGCGACTCCACTGACAGGCTGCCTCAGAGTCCTGGTGAGGCCCGT CGTCTCCCTGACTGGCCTGAGTGGCGGGATGCTCTTAATGGCGAGCTGAG CAGTATCACTGACAAGAATACCTACACTCTGGTTGACCGTCCTCCTCACG CAAATGTTATTGGTACTCTCTCGGTGCTCTCAAAAAAATCCGATGCCGAT GGTCACTTGGTTAGCCACACTCAGGAGTTTGGTGTTGATTATCGGCAGAC CTACTCGCCCGTTGTCAATGCGGCCAGTCTTAGGCTGCTGCTTGCTATCT CCGCGAACAAGGGCTATGCAGTTGACTCTCTGGACATTAGTACAGCTTTT CTGAATGGGGATATGGCCGAGGACGTCTACGTAAAGCAGCCTCCAGGCTT TGTGGATCCTGAGCATCCCGATAAAGTTTGGAAACTGAACAAGGCGCTGT ACGGGTTGCGCCAAAGCCCACGCATCTGGTACATGGAGTTGCATGATCAT CTCCTGTCTTTGGGTTTTCAGCGTAGTGGGCATGAATCCTGCTTGTACAT TCGTCGCGAAGGAGGCCGCGAGCTGATGGTGGCTGTATACGTTGATGATC TTGTCGTTAGTGGCAGCTCTCCCGCCCTTGTCTCTGATTTCAAGCAGTCT CTTGCGTCCAAATACGATCTCACCGATCAGGGGGAGCTTACTCAAATCCT CGGCATCAAGGTCGTTCGAGACAAGCGCAACAAGTGCTTCTATCTCTCCC AAACCTCTTTCATTAAGGATGCACTCTCCAAGTTCGGGCTCGATTACCTA CCTGCGTGCGCGGCGCCGATGGATCACACCGTTGATCTGACGCCTACCCC TGGCTTCAAGGCCGAGCTCTCCGACGCGAATATGTATAGGTCCATGGTTG GCACGTTGGCCTGGGTTGCAAACTGGACGAGGCCGGAGCTGGCTTTTACG GTTCACAAGCTTCAGCGCACTCAGTGTAACCCAGAGGCTAAGCATTTCGA GGCGGCCGAGCGTGCTTTTCGTTATCTTAAAGGCACTCAGTCTGAACCGT TGCGACTAGGTGGCGATCTGGTGCTACGTGCGTTCTCTGATTCGGATTTC TGCTCTGACCGTATTGATGGCAAGTCTGTCACAGGGTACGTTCTGTTTCT GGGTGACGCGCCTATACTTTGGTCCTCAAAGCTTCAAGGGGCGGTCACTA CCTCCACAGTGGAAGCAGAGTATCTCGCTCTTCGGTCGTCTGTCAAAGAC ATCATGTGGCTCCGGCATCTTCTTGCTGATCTTGGGTGTCCCCAGCAGGA GCCTACTCCTGTTGTAGAGGACAACAGTGCCTGCATTGAATGGGCAAATG ACTTATTGGTCTCCAAAAAGAATAGGCATTTCCATGTATCCTACCATCTT GCTAAGGAGCAGGTGAGCCTTGGGACTATCAGGATGTTCTTCATTAAGAC TCATAACCAGGTGGCTGATATTTTTACCAAA
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1251:47870..50250+

>mRNA_H-akashiwo_Contig1251.2.1 ID=mRNA_H-akashiwo_Contig1251.2.1|Name=mRNA_H-akashiwo_Contig1251.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=1968bp|location=Sequence derived from alignment at H-akashiwo_Contig1251:47870..50250+ (Heterosigma akashiwo CCMP452)
CTGCCTACGGGTAGGTCGAACCCGAACGGCAACAGCATCGCTGAGACCTC
TATTAAAGTCTGTTGTCAGAGAATGCGTGCTTCTTTGCACTCCAGCAACC
TCTCTGGTTCCTATTGGTCTGAAGCCCTTCTTCATTCCGTTGAAACGACC
AGTCGGTTGCCGACAAAGGGTCTGCCCAATCACATCTCTCCTTATGAGTC
GTGGTATGGTCATAGACCTTCCATCCTTCATCTTAGGTCTTTCGGTGCTT
CTTGCTATGCCTACCTCCCTGTCGAGCTTCGTCCTGGCAAGCTCTCCTCT
AAGGGAGTTCTTCACAAGTTTCTCTCCTATGGCTCCAGCACGGGGTATTC
TGATTCTGGTGCTTCTTCCTCCTCCCATGATGACTCGTCAGCGAATTCGT
TGCCGTCAGTGAATCTGCCTGCTCCTCCTGTCTCCTCTCCCTCCACCAAG
AACCTGTCGCCTTCTGGTACTGGTCGTGGTGGTGGTTCTTCGGTCTCTCA
AACGAATGCGCGTCTTCGTCGTCGTGCCAGGTCTCGTACTGCAAACTATG
CACGCAAACTTCGCAGAACTTCTGCACGGCTGCCTCAGAGTCCTGGTGAG
GCCCGTCGTCTCCCTGACTGGCCTGAGTGGCGGGATGCTCTTAATGGCGA
GCTGAGCAGTATCACTGACAAGAATACCTACACTCTGGTTGACCGTCCTC
CTCACGCAAATGTTATTGGTACTCTCTCGGTGCTCTCAAAAAAATCCGAT
GCCGATGGTCACTTGGTTAGCCACACTCAGGAGTTTGGTGTTGATTATCG
GCAGACCTACTCGCCCGTTGTCAATGCGGCCAGTCTTAGGCTGCTGCTTG
CTATCTCCGCGAACAAGGGCTATGCACCTCCAGGCTTTGTGGATCCTGAG
CATCCCGATAAAGTTTGGAAACTGAACAAGGCGCTGTACGGGTTGCGCCA
AAGCCCACGCATCTGGTACATGGAGTTGCATGATCATCTCCTGTCTTTGG
GTTTTCAGCGTAGTGGGCATGAATCCTGCTTGTACATTCGTCGCGAAGGA
GGCCGCGAGCTGATGGTGGCTGTATACGTTGATGATCTTGTCGTTAGTGG
CAGCTCTCCCGCCCTTGTCTCTGATTTCAAGCAGTCTCTTGCGTCCAAAT
ACGATCTCACCGATCAGGGGGAGCTTACTCAAATCCTCGGCATCAAGGTC
GTTCGAGACAAGCGCAACAAGTGCTTCTATCTCTCCCAAACCTCTTTCAT
TAAGGATGCACTCTCCAAGTTCGGGCTCGATTACCTACCTGCGTGCGCGG
CGCCGATGGATCACACCGTTGATCTGACGCCTACCCCTGGCTTCAAGGCC
GAGCTCTCCGACGCGAATATGTATAGGTCCATGGTTGGCACGTTGGCCTG
GGTTGCAAACTGGACGAGGCCGGAGCTGGCTTTTACGGTTCACAAGCTTC
AGCGCACTCAGTGTAACCCAGAGGCTAAGCATTTCGAGGCGGCCGAGCGT
GCTTTTCGTTATCTTAAAGGCACTCAGTCTGAACCGTTGCGACTAGGTGG
CGATCTGGTGCTACGTGCGTTCTCTGATTCGGATTTCTGCTCTGACCGTA
TTGATGGCAAGTCTGTCACAGGGTACGTTCTGTTTCTGGGTGACGCGCCT
ATACTTTGGTCCTCAAAGCTTCAAGGGGCGGTCACTACCTCCACAGTGGA
AGCAGAGTATCTCGCTCTTCGGTCGTCTGTCAAAGACATCATGTGGCTCC
GGCATCTTCTTGCTGATCTTGGGTGTCCCCAGCAGGAGCCTACTCCTGTT
GTAGAGGACAACAGTGCCTGCATTGAATGGGCAAATGACTTATTGGTCTC
CAAAAAGAATAGGCATTTCCATGTATCCTACCATCTTGCTAAGGAGCAGG
TGAGCCTTGGGACTATCAGGATGTTCTTCATTAAGACTCATAACCAGGTG
GCTGATATTTTTACCAAA
back to top