mRNA_H-akashiwo_Contig1250.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1250.3.1
Unique NamemRNA_H-akashiwo_Contig1250.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1250.3.1 vs. uniprot
Match: A0A7S3YJ72_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YJ72_HETAK)

HSP 1 Score: 553 bits (1424), Expect = 8.780e-198
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 1
Query:    1 PGGDTSAPSSDLLQECLSPQQFGLPSPPHVAPVRRYKKEIRQGLRKKVNQRLAGNGYKPAITEDHGSFTVEIYAPTRRNAPTTRKSTRSLPVHYKSNQGGHHTTTEGPIDQRNPVSHHRENEGTDAACSQPVKAKTPAGMIKHGLTSFSTLAFLKAQEIARLSELSSFYKDWVTAHEGAWQAMCISLWQSDGVHLPDSAPPGGWKEYFWDHAYPARQKWTAAVPSGGGGGRDFKIQVAVRFKPGPKAAGRGFLLPLHQRLQLLDR 795
            PGGDTSAPSSDLLQECLSPQQFGLPSPPHVAPVRRYKKEIRQGLRKKVNQRLAGNGYKPAITEDHGSFTVEIYAPTRRNAPTTRKSTRSLPVHYKSNQGGHHTTTEGPIDQRNPVSHHRENEGTDAACSQPVKAKTPAGMIKHGLTSFSTLAFLKAQEIARLSELSSFYKDWVTAHEGAWQAMCISLWQSDGVHLPDSAPPGGWKEYFWDHAYPARQKWTAAVPSGGGGGRDFKIQVAVRFKPGPKAAGRGFLLPLHQRLQLLDR
Sbjct:   37 PGGDTSAPSSDLLQECLSPQQFGLPSPPHVAPVRRYKKEIRQGLRKKVNQRLAGNGYKPAITEDHGSFTVEIYAPTRRNAPTTRKSTRSLPVHYKSNQGGHHTTTEGPIDQRNPVSHHRENEGTDAACSQPVKAKTPAGMIKHGLTSFSTLAFLKAQEIARLSELSSFYKDWVTAHEGAWQAMCISLWQSDGVHLPDSAPPGGWKEYFWDHAYPARQKWTAAVPSGGGGGRDFKIQVAVRFKPGPKAAGRGFLLPLHQRLQLLDR 301          
BLAST of mRNA_H-akashiwo_Contig1250.3.1 vs. uniprot
Match: A0A7S1GQB9_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GQB9_HEMAN)

HSP 1 Score: 70.5 bits (171), Expect = 4.270e-10
Identity = 36/89 (40.45%), Postives = 53/89 (59.55%), Query Frame = 1
Query:  538 WQAMCISLWQSDGVHLPDSAPPGGW---KEYFWDHAYPARQKWTAAVPSGGGGGRDFKIQVAVRFKPGPKAAGRGFLLPLHQRLQLLDR 795
            W  +C  +    G+ LP ++  G +   K+ F++H YPAR KW  +  +      DFKI+V VRFKPGP  + R  +LPLHQRL++L +
Sbjct:  132 WSTLCEVMASDLGLFLPRNSS-GTYVKNKKIFFEHLYPARNKWAESEVAS-----DFKIRVGVRFKPGPPLSNRDLVLPLHQRLKMLKK 214          
BLAST of mRNA_H-akashiwo_Contig1250.3.1 vs. uniprot
Match: A0A6T9CI09_9DINO (Hypothetical protein (Fragment) n=2 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A6T9CI09_9DINO)

HSP 1 Score: 67.4 bits (163), Expect = 3.810e-9
Identity = 40/103 (38.83%), Postives = 51/103 (49.51%), Query Frame = 1
Query:  535 AWQAMCISLWQSDGVHLPD--SAPPGGWKEYFWDHAYPARQKWTAAVPSGGGG-----------------GRDFKIQVAVRFKPGPKAAGRGFLLPLHQRLQL 786
            AWQ  C +L +   +  P       G W+  F++  +PAR KWTA   SG                    GRDF IQVAVRF+PG  + GR  L+PLHQ+L L
Sbjct:  179 AWQVACSTLARERALWCPTPVDGSRGHWRAMFFEQLWPARWKWTADAASGSAARQRQRRLGELGVVEEETGRDFTIQVAVRFRPGAISQGR-LLVPLHQKLML 280          
BLAST of mRNA_H-akashiwo_Contig1250.3.1 vs. uniprot
Match: A0A7S1CR04_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CR04_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 4.920e-9
Identity = 51/129 (39.53%), Postives = 67/129 (51.94%), Query Frame = 1
Query:  448 TLAFLKAQEI-ARLSELSSFYKDWVTA--HEGA-WQAMCISLWQSDGVHLPDSAPPG------GWKEYFWDHAYPARQKWTAAVPSGGGGGRD------FKIQVAVRFKPGPKAAGRGFLLPLHQRLQL 786
            +L FL  QE+ A +  LS  ++  +T+  H  A W + C SL    G+ LP  A          WK+ F++  +PAR KWT A      GG D      FKIQVAVRFKPG + +     LPLHQ L+L
Sbjct:  193 SLTFLTWQELLATIPRLSRRWRAMLTSDWHAPAVWASACNSLVAEHGLWLPHGAHSWLGVGVKAWKKLFFEQLWPARHKWTTAE-----GGTDPAAAHGFKIQVAVRFKPGDRGSS-ALSLPLHQFLRL 315          
BLAST of mRNA_H-akashiwo_Contig1250.3.1 vs. uniprot
Match: A0A8J5XYJ6_DIALT (Kinesin motor domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XYJ6_DIALT)

HSP 1 Score: 67.4 bits (163), Expect = 5.080e-9
Identity = 40/109 (36.70%), Postives = 49/109 (44.95%), Query Frame = 1
Query:  529 EGAWQAMCISLWQSDGVHLPDS-APP--------------GGWKEYFWDHAYPARQKWTAAVPSGGGGGRD--------FKIQVAVRFKPGPKAAGRGFLLPLHQRLQL 786
            E  W  MC++L +   ++ P   APP              G W   +W+  YPAR  W AA     G            FKI VAVR KPGP+      LLPLHQRL+L
Sbjct:  392 ESVWHVMCVALARGAQLYCPPLVAPPSAEARVLAAAASGGGRWARVWWEALYPARNAWRAAAARAAGDEPGAHAGVVARFKIDVAVRLKPGPRDVDAKLLLPLHQRLRL 500          
BLAST of mRNA_H-akashiwo_Contig1250.3.1 vs. uniprot
Match: A0A7S4RDI1_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4RDI1_9DINO)

HSP 1 Score: 63.9 bits (154), Expect = 7.280e-8
Identity = 42/105 (40.00%), Postives = 55/105 (52.38%), Query Frame = 1
Query:  535 AWQAMCISLWQSDGVHLPDSAPPGG--WKEYFWDHAYPARQKWTAAVPSGGGG----------------GRDFKIQVAVRFKPGPKAAGRGFLLPLHQRLQLLDR 795
            AW+  C SL +   +  P+    G   W+  F++  +PAR KW AA   GG                  GRDF IQVAVRF+PG  + GR F+ PLHQ+L LL+R
Sbjct:  478 AWRMACESLTRERALWCPEPVESGHGQWRTMFFEELWPARWKWAAA--DGGSEVRQRRLGELGVVEEETGRDFSIQVAVRFRPGATSQGRLFV-PLHQKL-LLER 578          
BLAST of mRNA_H-akashiwo_Contig1250.3.1 vs. uniprot
Match: A0A7S0M3X0_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M3X0_9CRYP)

HSP 1 Score: 61.2 bits (147), Expect = 2.100e-7
Identity = 42/145 (28.97%), Postives = 69/145 (47.59%), Query Frame = 1
Query:  364 EGTDAACSQPVKAKTPAGMIKHGLTSFSTLAFLKAQEIARLSELSSFYKDWVTAHEGAWQAMCISLWQSDGVHLPDS-APPGGWKEYFWDHAYPARQKWTAAVPSGGGGGRDFKIQVAVRFKPGPKAAGRGFLLPLHQRLQLLDR 795
            E +D     PVK      +I   ++    L  L  Q + +L ++S+   + +   E  ++ +  S+    G++  D  A   GW+  FW+H YPAR KW     S      + KI VAVR +   ++     +LPLHQRL++L +
Sbjct:   10 EVSDTPDCAPVKGTCHTHIIS-AVSHPDLLRLLGWQGVMKLRQVSATLCEALDNGEDGFKLLSRSIADDVGLYFTDEFAATVGWRNLFWEHLYPARNKWADQKCSV----IEHKISVAVRMRHDDQSRLEDIILPLHQRLRMLKK 149          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1250.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A7S3YJ72_HETAK8.780e-198100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1GQB9_HEMAN4.270e-1040.45Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A6T9CI09_9DINO3.810e-938.83Hypothetical protein (Fragment) n=2 Tax=Pyrodinium... [more]
A0A7S1CR04_9STRA4.920e-939.53Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A8J5XYJ6_DIALT5.080e-936.70Kinesin motor domain-containing protein n=2 Tax=Di... [more]
A0A7S4RDI1_9DINO7.280e-840.00Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7S0M3X0_9CRYP2.100e-728.97Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1250contigH-akashiwo_Contig1250:54748..55679 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size797
Hectar predicted targeting categoryother localisation
Exons2
Cds size795
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387133.2536068-CDS-H-akashiwo_Contig1250:54748..550001681387133.2536068-CDS-H-akashiwo_Contig1250:54748..55000Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1250 54749..55000 -
1681387133.2760882-CDS-H-akashiwo_Contig1250:55136..556791681387133.2760882-CDS-H-akashiwo_Contig1250:55136..55679Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1250 55137..55679 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1250.3.1prot_H-akashiwo_Contig1250.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1250 54749..55679 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1250.3.1

>prot_H-akashiwo_Contig1250.3.1 ID=prot_H-akashiwo_Contig1250.3.1|Name=mRNA_H-akashiwo_Contig1250.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=265bp
PGGDTSAPSSDLLQECLSPQQFGLPSPPHVAPVRRYKKEIRQGLRKKVNQ
RLAGNGYKPAITEDHGSFTVEIYAPTRRNAPTTRKSTRSLPVHYKSNQGG
HHTTTEGPIDQRNPVSHHRENEGTDAACSQPVKAKTPAGMIKHGLTSFST
LAFLKAQEIARLSELSSFYKDWVTAHEGAWQAMCISLWQSDGVHLPDSAP
PGGWKEYFWDHAYPARQKWTAAVPSGGGGGRDFKIQVAVRFKPGPKAAGR
GFLLPLHQRLQLLDR
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mRNA from alignment at H-akashiwo_Contig1250:54748..55679-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1250.3.1 ID=mRNA_H-akashiwo_Contig1250.3.1|Name=mRNA_H-akashiwo_Contig1250.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=932bp|location=Sequence derived from alignment at H-akashiwo_Contig1250:54748..55679- (Heterosigma akashiwo CCMP452)
CCAGGAGGCGACACGAGTGCCCCAAGCAGTGACCTGCTGCAGGAATGCTT GTCGCCTCAGCAATTTGGCCTTCCCAGCCCTCCACATGTCGCACCAGTGA GGCGTTACAAGAAGGAGATCAGGCAAGGTCTCAGGAAAAAAGTCAACCAA CGGCTGGCTGGAAATGGGTACAAGCCTGCAATCACTGAAGACCATGGGAG CTTTACCGTCGAAATTTACGCTCCCACCAGGAGGAACGCCCCCACCACGA GAAAGTCAACGAGAAGCTTACCTGTGCACTATAAATCTAATCAAGGGGGG CATCATACCACTACAGAAGGGCCAATAGACCAAAGAAATCCAGTATCACA CCACAGAGAGAATGAGGGCACTGATGCGGCATGCTCACAGCCGGTCAAAG CAAAAACTCCAGCAGGCATGATCAAACACGGGCTCACCTCGTTCAGCACT TTGGCCTTCCTCAAGGCCCAGGAAATTGCCCGTCTTAGCGAGCTCAGCTC GTTCTACAAGGACTGGGTGACCGCCCATGAGGGTGCATGGCAGGTGTATG GGTACTTTGGGGGCCACAGGCCATCGTAGGAACGCTTTTGTGATCATCTC CATCAAAACGTAATGAACTCTTCCCTACATTAAATTGCTGTTGTTGACTG CTATTGCACTTTACTTACTGTAATTGCAGGCCATGTGCATCAGCCTTTGG CAGTCTGATGGAGTGCACCTGCCGGACTCTGCCCCTCCCGGAGGGTGGAA GGAGTACTTTTGGGACCACGCCTACCCAGCGCGGCAGAAGTGGACTGCCG CCGTCCCTAGCGGCGGCGGCGGCGGCCGCGACTTCAAGATACAGGTAGCC GTTCGCTTCAAGCCCGGCCCCAAGGCCGCCGGCCGGGGGTTCCTGCTCCC CCTCCACCAGCGGCTGCAGCTGCTCGACCGCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1250:54748..55679-

>mRNA_H-akashiwo_Contig1250.3.1 ID=mRNA_H-akashiwo_Contig1250.3.1|Name=mRNA_H-akashiwo_Contig1250.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=795bp|location=Sequence derived from alignment at H-akashiwo_Contig1250:54748..55679- (Heterosigma akashiwo CCMP452)
CCAGGAGGCGACACGAGTGCCCCAAGCAGTGACCTGCTGCAGGAATGCTT
GTCGCCTCAGCAATTTGGCCTTCCCAGCCCTCCACATGTCGCACCAGTGA
GGCGTTACAAGAAGGAGATCAGGCAAGGTCTCAGGAAAAAAGTCAACCAA
CGGCTGGCTGGAAATGGGTACAAGCCTGCAATCACTGAAGACCATGGGAG
CTTTACCGTCGAAATTTACGCTCCCACCAGGAGGAACGCCCCCACCACGA
GAAAGTCAACGAGAAGCTTACCTGTGCACTATAAATCTAATCAAGGGGGG
CATCATACCACTACAGAAGGGCCAATAGACCAAAGAAATCCAGTATCACA
CCACAGAGAGAATGAGGGCACTGATGCGGCATGCTCACAGCCGGTCAAAG
CAAAAACTCCAGCAGGCATGATCAAACACGGGCTCACCTCGTTCAGCACT
TTGGCCTTCCTCAAGGCCCAGGAAATTGCCCGTCTTAGCGAGCTCAGCTC
GTTCTACAAGGACTGGGTGACCGCCCATGAGGGTGCATGGCAGGCCATGT
GCATCAGCCTTTGGCAGTCTGATGGAGTGCACCTGCCGGACTCTGCCCCT
CCCGGAGGGTGGAAGGAGTACTTTTGGGACCACGCCTACCCAGCGCGGCA
GAAGTGGACTGCCGCCGTCCCTAGCGGCGGCGGCGGCGGCCGCGACTTCA
AGATACAGGTAGCCGTTCGCTTCAAGCCCGGCCCCAAGGCCGCCGGCCGG
GGGTTCCTGCTCCCCCTCCACCAGCGGCTGCAGCTGCTCGACCGC
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