mRNA_H-akashiwo_Contig1245.8.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1245.8.1
Unique NamemRNA_H-akashiwo_Contig1245.8.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1245.8.1 vs. uniprot
Match: A0A6V1RZ10_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RZ10_HETAK)

HSP 1 Score: 203 bits (517), Expect = 2.040e-63
Identity = 99/102 (97.06%), Postives = 102/102 (100.00%), Query Frame = 1 
Query:   10 SDDAKTGRQRQREFERFYFACIGYSQTEVSMGTRKSSNQASIPNCEFGLNMTILSTPKEPEDVVHLREASGGNGCPDLAPSVNPTKFKSSNDSSENQPGVGK 315
            +DDAKTGRQRQREFERFYFACIGYSQTEVSMGTRKSSNQASIP+CEFGLNMTILSTPKEPEDVVHLREASGGNGCPDLAPSVNPTKFK+SNDSSENQPGVGK
Sbjct:   91 ADDAKTGRQRQREFERFYFACIGYSQTEVSMGTRKSSNQASIPSCEFGLNMTILSTPKEPEDVVHLREASGGNGCPDLAPSVNPTKFKNSNDSSENQPGVGK 192
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1245.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6V1RZ10_HETAK2.040e-6397.06Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1245contigH-akashiwo_Contig1245:205142..205666 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size317
Hectar predicted targeting categoryother localisation
Exons2
Cds size315
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387130.6545377-CDS-H-akashiwo_Contig1245:205141..2053461681387130.6545377-CDS-H-akashiwo_Contig1245:205141..205346Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1245 205142..205346 -
1681387130.670344-CDS-H-akashiwo_Contig1245:205556..2056661681387130.670344-CDS-H-akashiwo_Contig1245:205556..205666Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1245 205557..205666 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1245.8.1prot_H-akashiwo_Contig1245.8.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1245 205142..205666 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1245.8.1

>prot_H-akashiwo_Contig1245.8.1 ID=prot_H-akashiwo_Contig1245.8.1|Name=mRNA_H-akashiwo_Contig1245.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=105bp
MSLSDDAKTGRQRQREFERFYFACIGYSQTEVSMGTRKSSNQASIPNCEF
GLNMTILSTPKEPEDVVHLREASGGNGCPDLAPSVNPTKFKSSNDSSENQ
PGVGK
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mRNA from alignment at H-akashiwo_Contig1245:205142..205666-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1245.8.1 ID=mRNA_H-akashiwo_Contig1245.8.1|Name=mRNA_H-akashiwo_Contig1245.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=525bp|location=Sequence derived from alignment at H-akashiwo_Contig1245:205142..205666- (Heterosigma akashiwo CCMP452)
ATGTCACTTTCAGATGATGCGAAGACGGGAAGGCAAAGGCAAAGAGAATT
CGAAAGGTTCTATTTTGCCTGCATTGGGTATTCTCAAACTGAAGTGAGCA
TGGGCACTCGGTGAGTACTTGTTATATTTTATCACCCTTTTCAGGTAGTT
TGAAAGATTTTTTGCTTGTTTTGAAGACATCACAAACAGCCAGCCTCGCA
GCATGTTTCAAAACGCCTGCAAGTCTTCTCCCAACACAAGTGGCTTTCCC
ACCCATAGAGAGGGTATAAAGATGCATCTTGATAGATTCGGGTGCCTTTC
CTTTTTTCTGCCAATCCCAGAAAAAGTTCAAATCAAGCTTCTATCCCCAA
TTGCGAGTTTGGCCTGAACATGACAATTTTGAGCACACCCAAGGAACCAG
AAGATGTTGTGCACCTTCGTGAAGCATCTGGCGGGAATGGCTGTCCAGAT
TTGGCACCATCTGTGAACCCAACCAAATTTAAAAGCAGTAATGACAGCTC
AGAAAATCAACCTGGAGTTGGGAAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1245:205142..205666-

>mRNA_H-akashiwo_Contig1245.8.1 ID=mRNA_H-akashiwo_Contig1245.8.1|Name=mRNA_H-akashiwo_Contig1245.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=315bp|location=Sequence derived from alignment at H-akashiwo_Contig1245:205142..205666- (Heterosigma akashiwo CCMP452)
ATGTCACTTTCAGATGATGCGAAGACGGGAAGGCAAAGGCAAAGAGAATT
CGAAAGGTTCTATTTTGCCTGCATTGGGTATTCTCAAACTGAAGTGAGCA
TGGGCACTCGAAAAAGTTCAAATCAAGCTTCTATCCCCAATTGCGAGTTT
GGCCTGAACATGACAATTTTGAGCACACCCAAGGAACCAGAAGATGTTGT
GCACCTTCGTGAAGCATCTGGCGGGAATGGCTGTCCAGATTTGGCACCAT
CTGTGAACCCAACCAAATTTAAAAGCAGTAATGACAGCTCAGAAAATCAA
CCTGGAGTTGGGAAA
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