mRNA_H-akashiwo_Contig1245.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1245.5.1
Unique NamemRNA_H-akashiwo_Contig1245.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1245.5.1 vs. uniprot
Match: A0A7S3XZY9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZY9_HETAK)

HSP 1 Score: 107 bits (266), Expect = 4.610e-26
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 2 
Query:    2 NPAQRLGARGAAEVQAHKLFAGVPWDRLRAAALPAPITPKLDPLDLTCNFPR 157
            NPAQRLGARGAAEVQAHKLFAGVPWDRLRAAALPAPITPKLDPLDLTCNFP 
Sbjct:  290 NPAQRLGARGAAEVQAHKLFAGVPWDRLRAAALPAPITPKLDPLDLTCNFPE 341
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BLAST of mRNA_H-akashiwo_Contig1245.5.1 vs. uniprot
Match: T0RP00_SAPDV (AGC protein kinase n=3 Tax=Saprolegniaceae TaxID=4764 RepID=T0RP00_SAPDV)

HSP 1 Score: 50.4 bits (119), Expect = 8.910e-6
Identity = 23/39 (58.97%), Postives = 27/39 (69.23%), Query Frame = 2 
Query:    2 NPAQRLGARGAAEVQAHKLFAGVPWDRLRAAALPAPITP 118
            NPA+RLGARGAAEV+AH  F  + WD L A  +P P  P
Sbjct:  543 NPAERLGARGAAEVKAHPFFESIEWDDLLALKMPPPFRP 581
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1245.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3XZY9_HETAK4.610e-2698.08Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
T0RP00_SAPDV8.910e-658.97AGC protein kinase n=3 Tax=Saprolegniaceae TaxID=4... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1245contigH-akashiwo_Contig1245:145947..148299 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size167
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387130.6061049-CDS-H-akashiwo_Contig1245:145947..1459921681387130.6061049-CDS-H-akashiwo_Contig1245:145947..145992Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1245 145948..145992 -
1681387130.6189706-CDS-H-akashiwo_Contig1245:148179..1482991681387130.6189706-CDS-H-akashiwo_Contig1245:148179..148299Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1245 148180..148299 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1245.5.1prot_H-akashiwo_Contig1245.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1245 145948..148299 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1245.5.1

>prot_H-akashiwo_Contig1245.5.1 ID=prot_H-akashiwo_Contig1245.5.1|Name=mRNA_H-akashiwo_Contig1245.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=55bp
EPGPAAGRAGRGRGAGAQAVRRRPVGPPARRGPPRAHHAQAGPAGPDVQL
PEEFT
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mRNA from alignment at H-akashiwo_Contig1245:145947..148299-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1245.5.1 ID=mRNA_H-akashiwo_Contig1245.5.1|Name=mRNA_H-akashiwo_Contig1245.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2353bp|location=Sequence derived from alignment at H-akashiwo_Contig1245:145947..148299- (Heterosigma akashiwo CCMP452)
GAACCCGGCCCAGCGGCTGGGCGCGCGGGGCGCGGCCGAGGTGCAGGCGC
ACAAGCTGTTCGCCGGCGTCCCGTGGGACCGCCTGCGCGCCGCGGCCCTC
CCCGCGCCCATCACGCCCAAGTGAGCCCCCACCCCCGCTCGCCCGCCCCC
GCGGGTTGGAGTGGTGTCGGAGTGGTGGTACATGGGAGGCGCGTCTTCCT
CGTCGGTTGTGATTCGGCTTGGATAATCTCGGGCCAGTCATCGACCCTTG
GAGATGTCCAGTTCTTTGCTTGCGTGGAAAGGAAACACTGGCGTAAGTAA
GAAGTGCATGGGTGGAGATAAGCCAAAACCTTCAGAAGAGCGACTGCCGG
AGAGGTACTATCCAGTGGAGCGTTTCGGAGAAGAAGAAAGATGCCCGAGG
TGCATGGCCGTAAAAAGTGCTGGCAAGGGCCTGCCAGTCCGACCATAGCA
GCCCTACATCAACAGGCTCAGAAATCACACAACATGCTTGGGGTCGACTG
GTGGTAGAGGACGCGACGAGAGCATGGCAACGTCTATTTTTCTTGTGTAT
GTGGTTGTTGGGAAATGGTAGTGGGGTGATTGGTTAGTAGTTGAAGTGGA
AGGGTCTGCTTATAGAACCTAGAGGCTCAGCCCCGAAAGTGGTTGGAACG
GCAAGACTGAAAAATAACATCATCATCATCAGCTATGATATGTTGTGTCG
AATGATGATGATGAAACAATGATGATAATTTTAATTTAAATTCAAGAAGG
TCCGGCCTTTTGGATAACTATGTACAAGAGGACCGAAGTCCCGGCCTCCA
TACACGGACACTTCCACTTCTAGGTTCCGTATCTCGCACCCCTACTCAAC
ACCAGAACTTGTGAAGGAAAAACGGACCGCTGATGCATCACACACTCCTC
TTCCAATCCCACATACCCATCCTCCACACAACCATGTCAATCACCTACCA
CCTATAGTAGTACCTTCTCCGAAATGCTCCCTCAACCATTCCCTTATAGC
TTCCTCTGTGTCAAAGCTCCTCCCATACCAGTACTCTTCATCTTGCCGCT
TCCCTTCGCGCTCCTACCACTTCATATATTCCTGCTCTGCCTCAGCAGCA
CTCTCAAACCCATTCACCACCCAGCTCTGGTGTCTCCGGCACCCTCCTCT
GAGCCGTTGCTCTCTGAATCACCGCCGCGAGGCCGCCCCTGCCGCCAACT
CTGCCGCCAGCTCTGCCGCCACGCCGGCCGCCACCAGGACGCCCGCTGCC
GCCGCGTCCACGACCGCTGCCACCCGTGCCATCATCTTCGCTGGGCCCCT
CGTCCTCATTCCACCCTCAGCCGCCACCCCATCGCTTTCTTCCATGCATT
GTCTTCTTCCCCTCCTTCCTCCAAACTCCAGCCACTGTGGTCACCCTGGG
CCATGGTTTCCCGCTCTCTGCGTTCCCGTTCCGCCCGCACTATCGCAGCG
TCTAGTAGCTTATCCTCGCTTAGCGCTCCCCCGCCGACTGCCTCCTCCTT
TGCTACCAGCGCCTCCTCACCAGTGTGCCACTGCCCCAGGCCTGGCCCCA
CCTCCAGCTCCCATCCCGGGGCCCCAACCCTCTCCTCCTCATTGGCATGC
TCCCCTCGTGTTCGCTCTGCTGCCCACCAGAGCCCTCCAGTTGAGCATCA
GGGTTGGCTGTCTCAAACTCCCCCCCATCAGGGTTGGCTATCTCAAACTG
CCGCCCTTTGGTTTAGCCCGCTACGGTGCAATGGGGCCTTTTTGCTTCCT
CATCAGTCCTTGGTTGCACTCCACCTCAATTAAAGCGTGGCAATGCCAAA
ACGCACAGCCCTCGCCGTCACTACCCATCCAACAGTTTCTATATTTGATG
GTGAATGCACGGTGCAGCCCAACCACCAAGTGGTCCACGCACTTTAGCCA
TGACTCAACAGATAGTTTCAACTTTTTATTTCAATTTCAGATCCAGAATA
CTTACTTGTATCACGATGACGATGATGATGATTTAAACTTATTTATGAAG
GCCCAGCCACTTGGATAACTACAAGGGCGAGCTCCGGCCTCCACAAAGCG
GACCCTTACAGTTTATGTACATACACAATAACATCATATATATTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTTTTTTTTTTTTTTTTTT
TCTACGATAAGCACAAAGTGGAGAAATAGTTCAGCTAGGCTATGATGCTA
CCTCTGCTCATGTCATTTGCATTTTTCTTTCTTTCCCTTTTTTCTTTTTT
TTTTTCTTCTTTTTCTAAGACTTCTGATGTACATGACATGACTGCGCCCG
CCCCCAGGCTGGACCCGCTGGACCTGACGTGCAACTTCCCGAGGAGTTCA
CGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1245:145947..148299-

>mRNA_H-akashiwo_Contig1245.5.1 ID=mRNA_H-akashiwo_Contig1245.5.1|Name=mRNA_H-akashiwo_Contig1245.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=165bp|location=Sequence derived from alignment at H-akashiwo_Contig1245:145947..148299- (Heterosigma akashiwo CCMP452)
GAACCCGGCCCAGCGGCTGGGCGCGCGGGGCGCGGCCGAGGTGCAGGCGC
ACAAGCTGTTCGCCGGCGTCCCGTGGGACCGCCTGCGCGCCGCGGCCCTC
CCCGCGCCCATCACGCCCAAGCTGGACCCGCTGGACCTGACGTGCAACTT
CCCGAGGAGTTCACG
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