mRNA_H-akashiwo_Contig1244.6.1 (mRNA) Heterosigma akashiwo CCMP452
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Overview
Homology
BLAST of mRNA_H-akashiwo_Contig1244.6.1 vs. uniprot
Match: A0A6H5KK48_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KK48_9PHAE) HSP 1 Score: 117 bits (294), Expect = 8.800e-26 Identity = 97/293 (33.11%), Postives = 131/293 (44.71%), Query Frame = 1
Query: 10 DVLESSHEMLNNAEDALAGLQDNLDSLDHHFPLLPWAPEELEERAAAFRALARKHACAPARLAAVAAALRAELDAPPTPAPACRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAGRVNALLPGLGLEAAVFAVSVEA----GGGGRDKVQFTLQQPPTMAPVPLAQGASSGEKSRLLLLLEACLPPPSDHSGASWPNQ------------------------------------PVVSIMDEVDSHVGGKSAAAVGKLLFELSLSRQIISVTHSAPVAAWAGEGQHFIVEK 768
D+LE +HE LN+ +D + + + L+ P+LP EE+EER +R LARKH P RL ++ A LR ELD A A + VN ++ +GLE A F V VE G G D+VQF ++ + ASSGEKSRLLLLLE LPPP S A ++ P + DE+D+HVGG++A AVG+LL Q++ VTH+A VAA A QH +V+K
Sbjct: 483 DLLEGTHEDLNSLDDLVKSVGEKLERSVESLPVLPITLEEVEERTVKWRDLARKHGVPPERLGSMQAQLRVELDELVVAAEALPLAREKEERWRAAAEEAAGELSAVRRRAALEVEQLVNPMMADVGLEGATFKVLVEESKALGPSGADRVQFLIEANEGQTRGTVDAVASSGEKSRLLLLLETLLPPPQARSTAKVGDRRGVVVGEEGVTAEGVDADGEAAGTAAGGGGGVVRVPPCAVLYDEIDAHVGGRTAVAVGRLLANQGRDSQVVVVTHTASVAALAD--QHLVVDK 773
BLAST of mRNA_H-akashiwo_Contig1244.6.1 vs. uniprot
Match: A0A1L3R9A5_9PROT (DNA repair protein RecN n=6 Tax=Granulibacter bethesdensis TaxID=364410 RepID=A0A1L3R9A5_9PROT) HSP 1 Score: 100 bits (248), Expect = 7.280e-20 Identity = 100/299 (33.44%), Postives = 132/299 (44.15%), Query Frame = 1
Query: 37 LNNAEDALAGLQDNLDSLDHHFPLLPWAPEELEERAAAFRALARKHACAPARLAAVAAALRAELDAPPTPAPACRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAGRVNALLPGLGLEAAVFAVSVEA------GGGGRDKVQFTLQQPPTMAPVPLAQGASSGEKSRLLLLLEACLPPPSDHSGASWPNQPVVSIMDEVDSHVGGKSAAAVGKLLFELSLSRQIISVTHSAPVAAWAGEGQHFIVEKKSVQGDDGWEIDVVVDCVTGFEREQEIARMAIGDASNHLASSLAQEMLA 915
L AE+ALA + L L + P E +EER A RA ARKH L + LR L A + A L +NA LP L LE A F +E G G+D + F + P P PLA+ AS GE SRL+L L+ L AS P + + DEVDS +GG +AAAVG+ L +++ Q++ VTHS VAA GQ + KSV D V+ + G ER +EIARM G+ A + A ++LA
Sbjct: 280 LERAEEALAEAEMLLSRLINDSDADPRQLEHIEERLFALRAAARKHNVTVLELPGLLETLRQRLSALESGDHAIAALTVEENRARQAYLEAAATLSAARQQAATQLERAINAELPPLKLERARFFTRIETLPERQWGEAGQDSIAFLIAANPGQPPGPLAKVASGGELSRLMLALKVVL--------ASRSTVPTL-VFDEVDSGIGGATAAAVGERLAQVARHSQVLVVTHSPQVAA---RGQAHLRVAKSVTKD---RTATTVEVLIGAERREEIARMLSGETITEAARAAADDLLA 563
BLAST of mRNA_H-akashiwo_Contig1244.6.1 vs. uniprot
Match: A0A7S3LCQ9_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LCQ9_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 8.680e-19 Identity = 73/210 (34.76%), Postives = 110/210 (52.38%), Query Frame = 1
Query: 364 VNALLPGLGLEAAVFAVSVEA------------GGGGRDKVQFTLQ------QPPTMAPVPLAQGASSGEKSRLLLLLEACLPPP---------SDHSGASWPNQPVVSIMDEVDSHVGGKSAAAVGKLLFELSLSRQIISVTHSAPVAAWAGEGQHFIVEKKSVQGDDGWEIDVVVDCVTGFEREQEIARMAIGDASNHLASSLAQEML 912
VN LP LG+ + F +++ + G G D V+F LQ + P+ L Q ASSGEK+R+LL +E LP + SG P P+ + DE+D+HVGG++A A+G +L + SL Q+I++THS VAA A H +V+K ++ GD + V+ + ER QE+ARMA GD + A A+ ++
Sbjct: 51 VNRRLPSLGMATSEFDITINSNARKCTDSSAYSGNLGLDDVEFMLQHGTRTTKEPSRRGGTLHQVASSGEKARILLAIECSLPGSIRAATGSTNTFVSGILPPPIPITVVYDEIDAHVGGRAAVALGHMLADQSLQSQVIAITHSPAVAASADA--HIVVQK-TLSGD---RTLISVESKSEAERRQELARMASGDVAAQEAEVFAEALI 254
BLAST of mRNA_H-akashiwo_Contig1244.6.1 vs. uniprot
Match: UPI0009FBCC71 (DNA repair protein RecN n=1 Tax=Demequina sp. NBRC 110052 TaxID=1570341 RepID=UPI0009FBCC71) HSP 1 Score: 96.7 bits (239), Expect = 1.110e-18 Identity = 76/190 (40.00%), Postives = 103/190 (54.21%), Query Frame = 1
Query: 352 LAGRVNALLPGLGLEAAVFAVSV---EAGGGGRDKVQFTLQQPPTMAPVPLAQGASSGEKSRLLLLLEACLPPPSDHSGASWPNQPVVSIMDEVDSHVGGKSAAAVGKLLFELSLSRQIISVTHSAPVAAWAGEGQHFIVEKKSVQGDDGWEIDVVVDCVTGFEREQEIARMAIGDASNHLASSLAQEML 912
LA V+A L GL + A FAV V E G G D+V TL +P+AQ AS GE SR++L +E L S G ++ + DEVD+ VGGK+A AVG+ L EL+ + Q++ VTH A VAA+A H +V+K S DG V V G +R QE+AR+ G + A + A E+L
Sbjct: 379 LAADVDAELDGLAMRDASFAVEVAPAELGRHGADEVTMTLAGHVGAPALPVAQAASGGELSRVMLAIEVSLARRSRAPGHTF-------VFDEVDAGVGGKAAQAVGRRLAELARTHQVLVVTHLAQVAAFADT--HIVVQKAS----DGAVTRSQVRAVEGEDRVQEVARLLSGHEDSVAARAHAYELL 555
BLAST of mRNA_H-akashiwo_Contig1244.6.1 vs. uniprot
Match: A0A1Q3UWH0_9PROT (DNA repair protein RecN n=1 Tax=Rhodospirillales bacterium 69-11 TaxID=1895825 RepID=A0A1Q3UWH0_9PROT) HSP 1 Score: 95.5 bits (236), Expect = 2.760e-18 Identity = 103/298 (34.56%), Postives = 132/298 (44.30%), Query Frame = 1
Query: 37 LNNAEDALAGLQDNLDSLDHHFPLLPWAPEELEERAAAFRALARKHACAPARLAAVAAALRAELDAPPTPAPACRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAGRVNALLPGLGLEAAVFAVSV----EAG--GGGRDKVQFTLQQPPTMAPVPLAQGASSGEKSRLLLLLEACLPPPSDHSGASWPNQPVVSIMDEVDSHVGGKSAAAVGKLLFELSLSRQIISVTHSAPVAAWAGEGQHFIVEKKSVQGDDGWEIDVVVDCVTGFEREQEIARMAIGDASNHLASSLAQEML 912
L AE+ALA + L L P E+ EER A R ARKH+ A A L A+ L A L A T A L V LP L LE A F V EA GGG D V+F + P P PLA+ AS GE SRL+L L+ L +G++ P + DEVDS +GG +AAAVG L ++ Q++ VTHS VAA G H V K + +G VD + G +R +EIARM G+ A + A ++L
Sbjct: 280 LERAEEALAEAETLLTRLAGEAEADPRLLEQAEERLFALRGAARKHSVAVAELPALLDTLAARLGALETGAAEIVALEEAVRTARERYAAAAAALTTARQEAAQRLERAVARELPPLRLEKARFFAEVAPLPEANWAGGGADAVRFLIATNPGQPPGPLARIASGGELSRLMLALKVVLT-----AGSAVPTL----VFDEVDSGIGGATAAAVGDRLARVAEGVQVLVVTHSPQVAARGGA--HLRVMKAAERG----RAATRVDPLRGPDRREEIARMLAGETVTEAARAAADDLL 562
BLAST of mRNA_H-akashiwo_Contig1244.6.1 vs. uniprot
Match: UPI000783016B (DNA repair protein RecN n=1 Tax=Demequina pelophila TaxID=1638984 RepID=UPI000783016B) HSP 1 Score: 95.1 bits (235), Expect = 3.700e-18 Identity = 78/190 (41.05%), Postives = 100/190 (52.63%), Query Frame = 1
Query: 349 ALAGRVNALLPGLGLEAAVFAVSV---EAGGGGRDKVQFTLQQPPTMAPVPLAQGASSGEKSRLLLLLEACLPPPSDHSGASWPNQPVVSIMDEVDSHVGGKSAAAVGKLLFELSLSRQIISVTHSAPVAAWAGEGQHFIVEKKSVQGDDGWEIDVVVDCVTGFEREQEIARMAIGDASNHLASSLAQEM 909
ALA RV L L ++ A FAV V E G G D V TL P P P+AQ AS GE SR++L LE L +DH+ P + DEVD+ VGG++A AVG+ L L+ + Q+I VTH A VAA A H +V KSV DG V V G R +E+AR+ G + A + A E+
Sbjct: 376 ALAARVAQELRLLAMKDAAFAVEVTAAEPGPTGADVVAMTLAAHPGAEPRPVAQAASGGELSRIMLALEVAL---ADHA----PEGGHTFVFDEVDAGVGGRAAVAVGQRLAALARTHQVIVVTHLAQVAAHA---DHHLVVAKSV---DGGTTRTAVREVDGDARVEELARLLSGHEDSATARAHAHEL 552
BLAST of mRNA_H-akashiwo_Contig1244.6.1 vs. uniprot
Match: A0A1M3QC97_9PROT (DNA repair protein RecN n=1 Tax=Rhodospirillales bacterium 70-18 TaxID=1895826 RepID=A0A1M3QC97_9PROT) HSP 1 Score: 95.1 bits (235), Expect = 3.730e-18 Identity = 99/300 (33.00%), Postives = 134/300 (44.67%), Query Frame = 1
Query: 37 LNNAEDALAGLQDNLDSLDHHFPLLPWAPEELEERAAAFRALARKHACAPARLAAVAAALRAELDAPPTPAPACRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAGRVNALLPGLGLEAAVFAVSVEA------GGGGRDKVQFTLQQPPTMAPVPLAQGASSGEKSRLLLLLEACLPPPSDHSGASWPNQPVVSIM-DEVDSHVGGKSAAAVGKLLFELSLSRQIISVTHSAPVAAWAGEGQHFIVEKKSVQGDDGWEIDVVVDCVTGFEREQEIARMAIGDASNHLASSLAQEMLA 915
L+ AE+AL+ ++ L L P E+ EER A RA ARKH A L + A LR L A T + L V LP L LE A F + A G G D V+F + P P PLA+ AS GE SRL+L L+ L +G S P+ +++ DEVDS +GG +AAAVG+ L ++ Q++ VTHS VAA H V K++ +G + V + G ER +EIARM G+ A + A +LA
Sbjct: 280 LDRAEEALSEAENLLARLAESAEADPRLLEQAEERLFALRAAARKHGVAVTELPTLLADLRTRLAALETGSAEVDALERAAAATRTAFAELCARLSAARREAAARLDRAVARELPPLRLERARFVTDIAALDEAAWGAAGADAVRFLIATNPGQTPGPLAKVASGGELSRLMLALKVVL------AGGS----PIPTLVFDEVDSGIGGATAAAVGERLARVAERVQVLLVTHSPQVAARGAA--HLRVLKQTAKG----RAETHVQPLAGSERREEIARMLAGETVTEAARAAADSLLA 563
BLAST of mRNA_H-akashiwo_Contig1244.6.1 vs. uniprot
Match: A0A8J2Z7I4_9PROT (DNA repair protein RecN n=2 Tax=Caldovatus TaxID=2041181 RepID=A0A8J2Z7I4_9PROT) HSP 1 Score: 94.7 bits (234), Expect = 5.000e-18 Identity = 107/295 (36.27%), Postives = 140/295 (47.46%), Query Frame = 1
Query: 46 AEDALAGLQDNLDSLDHHFPLLPWAPEELEERAAAFRALARKHACAPARLAAVAAALRAELDAPPTPAPACRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAGRVNALLPGLGLEAAVFAVSV----EAGGG--GRDKVQFTLQQPPTMAPVPLAQGASSGEKSRLLLLLEACLPPPSDHSGASWPNQPVVSIMDEVDSHVGGKSAAAVGKLLFELSLSRQIISVTHSAPVAAWAGEGQHFIVEKKSVQGDDGWEIDVVVDCVTGFEREQEIARMAIGDASNHLASSLAQEML 912
A+DA+A + L+ L P E++EER A RA ARKH+ A A L A+ AALR L A XXXX L V LP L L+ A A+ V E G G G D+V F + P AP PLA+ AS GE SRL+L L+ L G+ P I DEVDS +GG +AAAVG+ L ++ Q++ VTHS VAA G +HF V K +V+G+ +V + G R +EIARM G+ A + A +L
Sbjct: 277 AQDAMAEAETLLERLLAEGGPDPRRLEQVEERLFALRAAARKHSVAVAELPALLAALRERLAALDAGTXXXXXXXXXAREARASYLAAGAALTEARRTAAARLEKAVARELPPLKLDRARLAIEVAPREEPGWGADGMDRVAFLVATNPGQAPGPLARIASGGELSRLMLALKVVLA-----RGSPVPTL----IFDEVDSGIGGATAAAVGERLARVAERLQVLVVTHSPQVAARGG--RHFRVAK-TVRGE---RAATLVQPLDGPARREEIARMLAGERVTEAARAAADSLL 556
BLAST of mRNA_H-akashiwo_Contig1244.6.1 vs. uniprot
Match: A0A1T4JPT3_9HYPH (DNA repair protein RecN n=1 Tax=Enhydrobacter aerosaccus TaxID=225324 RepID=A0A1T4JPT3_9HYPH) HSP 1 Score: 94.4 bits (233), Expect = 6.790e-18 Identity = 94/270 (34.81%), Postives = 126/270 (46.67%), Query Frame = 1
Query: 124 EELEERAAAFRALARKHACAPARLAAVAAALRAELDAPPTPAPACRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAGRVNALLPGLGLEAAVFAVSVEA------GGGGRDKVQFTLQQPPTMAPVPLAQGASSGEKSRLLLLLEACLPPPSDHSGASWPNQPVVSIMDEVDSHVGGKSAAAVGKLLFELSLSRQIISVTHSAPVAAWAGEGQHFIVEKKSVQGDDGWEIDVVVDCVTGFEREQEIARMAIGDASNHLASSLAQEMLA 915
E++EER A RA+ARKH A A LA +A ++A+L A ++ L V A L L LE A F V A G D+VQFT+ P AP P+A+ AS GE SR LL L+ CL D + + DEVDS +GG +AAAVG L L+ Q++ VTHS VAA A +H+++ K + + E+ V +D TG R +EIARM G A + A +LA
Sbjct: 305 EKIEERLFALRAMARKHNVAVAGLADLADRMKAQLAALDDGESGLKKLFAVAKTARQAYVSAAEAQATARRKGAARLDKAVAAELGPLKLEKAKFVTEVTALPEQEWSEAGTDRVQFTVSTNPGAAPAPIAKIASGGELSRFLLALKVCLAKVGDAA---------TIVFDEVDSGIGGATAAAVGDRLKRLAKEVQVLVVTHSPQVAAVAD--RHWLIRKITTRNAASTEV-VALDA-TG--RREEIARMLSGAEVTAEARAAADRLLA 559
BLAST of mRNA_H-akashiwo_Contig1244.6.1 vs. uniprot
Match: A0A421BMJ2_9RHOB (DNA repair protein RecN n=4 Tax=root TaxID=1 RepID=A0A421BMJ2_9RHOB) HSP 1 Score: 94.0 bits (232), Expect = 8.960e-18 Identity = 120/291 (41.24%), Postives = 144/291 (49.48%), Query Frame = 1
Query: 52 DALAGLQDNLDSLDHHFPLLPWAPEELEERAAAFRALARKHACAPARLAAVAAALRAELDAPPTPAPACRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAGRVNALLPGLGLEAAVFAVSV---EAGGGGRDKVQFTLQQPPTMAPVPLAQGASSGEKSRLLLLLEACLPPPSDHSGASWPNQPVVSIMDEVDSHVGGKSAAAVGKLLFELSLSRQIISVTHSAPVAAWAGEGQHFIVEKKSVQGDDGWEIDVVVDCVTGFEREQEIARMAIGDASNHLASSLAQEMLA 915
+A G++ LD+L+ P A E EER A RALARKH P L A LRA L A XXXXXXXXXXXXXXXXXXX L + A L L LE AVF + EAG G D V FT+ P PL + AS GE SR LL L+ L +D + I DE+D VGG +A AVG+ L +LSLS Q++ VTHS VAA HF V K G + V+ + ER EIARM G A + AQE++A
Sbjct: 277 EAAQGVEIALDALNFD----PRALESCEERLFAIRALARKHGVLPDELCGFAGELRARLAALDAGEAGIAALEVEXXXXXXXXXXXXXXXXXXXAEASVRLDAAMAAELAPLKLERAVFETQIAPGEAGPEGTDAVAFTVATNPGAPAGPLNRIASGGELSRFLLALKVVLARGADA---------LTLIFDEIDRGVGGATADAVGRRLAKLSLSAQVLVVTHSPQVAARGNT--HFRVAKSVSDGMTTSRVSVL----SAAERVDEIARMISGAEVTGAARAAAQELIA 548 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1244.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig1244.6.1 >prot_H-akashiwo_Contig1244.6.1 ID=prot_H-akashiwo_Contig1244.6.1|Name=mRNA_H-akashiwo_Contig1244.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=305bp SLNDVLESSHEMLNNAEDALAGLQDNLDSLDHHFPLLPWAPEELEERAAAback to top mRNA from alignment at H-akashiwo_Contig1244:200812..201726+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig1244.6.1 ID=mRNA_H-akashiwo_Contig1244.6.1|Name=mRNA_H-akashiwo_Contig1244.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=915bp|location=Sequence derived from alignment at H-akashiwo_Contig1244:200812..201726+ (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig1244:200812..201726+ >mRNA_H-akashiwo_Contig1244.6.1 ID=mRNA_H-akashiwo_Contig1244.6.1|Name=mRNA_H-akashiwo_Contig1244.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=915bp|location=Sequence derived from alignment at H-akashiwo_Contig1244:200812..201726+ (Heterosigma akashiwo CCMP452)back to top |