mRNA_H-akashiwo_Contig1243.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1243.3.1
Unique NamemRNA_H-akashiwo_Contig1243.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1243.3.1 vs. uniprot
Match: A0A7S3XU57_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU57_HETAK)

HSP 1 Score: 374 bits (961), Expect = 4.590e-128
Identity = 176/249 (70.68%), Postives = 208/249 (83.53%), Query Frame = 1
Query:   19 KVSLPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWRVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREG*KLNPRR*KAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKRVEWTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQ 765
            K  LPT REMFDQL G++YFSS+DMLWAYWS+PLR+ D+HKTAFT+RNKKY + VMCFGLTNAPATFSHLVNKVFQG  +DFALCFLDDVL ++G +FS HL  LE+IF RMI ANLKFKLPKCLFGA+QVP+LGHI TREG K +P++ +A+K ++RP +KKQVRQ LGLASYYRQFV  F+  A PLY LTK  PK VEWTDDCEW++Q LKD L + PILI+P F++ F +ETDAS  GLGA+LSQ
Sbjct:   26 KFPLPTPREMFDQLEGAYYFSSLDMLWAYWSVPLRDEDKHKTAFTVRNKKYAFNVMCFGLTNAPATFSHLVNKVFQGCQHDFALCFLDDVLCYTGPDFSLHLRQLEEIFIRMIKANLKFKLPKCLFGAAQVPFLGHIATREGLKPDPKKIEAIKKLQRPQTKKQVRQVLGLASYYRQFVPNFAATAAPLYTLTKKEPKGVEWTDDCEWAFQNLKDTLTTAPILIFPNFNKEFTIETDASKHGLGAILSQ 274          
BLAST of mRNA_H-akashiwo_Contig1243.3.1 vs. uniprot
Match: A0A7S3XVA0_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVA0_HETAK)

HSP 1 Score: 367 bits (941), Expect = 1.700e-122
Identity = 171/249 (68.67%), Postives = 208/249 (83.53%), Query Frame = 1
Query:   19 KVSLPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWRVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREG*KLNPRR*KAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKRVEWTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQ 765
            K  LPT REMFD LA ++YF+S+DMLWAYWS+PLRE D+ KTAFT+RN+KY + VMCFGLTNAPATFSHLVNKVFQG   +FALCFLDDVL +S + F+ HL +L +IFKRM AANLKFKLPKC+FGA+Q+P+LGH+ +REG K +P++ +AV+ +RRP SKKQVRQ LGLASYYRQFV  F+ IA PLY+LTKD PK V W DDCEW++Q +KD L S P+L+YPR+D+PFIVETDAS  GLGA+L Q
Sbjct:  164 KFPLPTAREMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPFLGHLASREGLKPDPKKIEAVRKLRRPESKKQVRQLLGLASYYRQFVPNFASIAAPLYKLTKDKPKGVLWDDDCEWAFQEIKDSLTSAPVLMYPRWDKPFIVETDASKTGLGAILLQ 412          
BLAST of mRNA_H-akashiwo_Contig1243.3.1 vs. uniprot
Match: A0A7S3XV63_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV63_HETAK)

HSP 1 Score: 367 bits (941), Expect = 4.010e-120
Identity = 171/249 (68.67%), Postives = 208/249 (83.53%), Query Frame = 1
Query:   19 KVSLPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWRVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREG*KLNPRR*KAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKRVEWTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQ 765
            K  LPT REMFD LA ++YF+S+DMLWAYWS+PLRE D+ KTAFT+RN+KY + VMCFGLTNAPATFSHLVNKVFQG   +FALCFLDDVL +S + F+ HL +L +IFKRM AANLKFKLPKC+FGA+Q+P+LGH+ +REG K +P++ +AV+ +RRP SKKQVRQ LGLASYYRQFV  F+ IA PLY+LTKD PK V W DDCEW++Q +KD L S P+L+YPR+D+PFIVETDAS  GLGA+L Q
Sbjct:  164 KFPLPTAREMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPFLGHLASREGLKPDPKKIEAVRKLRRPESKKQVRQLLGLASYYRQFVPNFASIAAPLYKLTKDKPKGVLWDDDCEWAFQEIKDSLTSAPVLMYPRWDKPFIVETDASKTGLGAILLQ 412          
BLAST of mRNA_H-akashiwo_Contig1243.3.1 vs. uniprot
Match: A0A4Y2TZG3_ARAVE (Retrovirus-related Pol polyprotein from transposon 297 (Fragment) n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2TZG3_ARAVE)

HSP 1 Score: 223 bits (567), Expect = 2.900e-68
Identity = 115/252 (45.63%), Postives = 163/252 (64.68%), Query Frame = 1
Query:   10 KEGKVSLPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWRVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREG*KLNPRR*KAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKRVEWTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQ 765
            K+    LP   +  D L GS +F+++D+   YW I +R  DR KTAFT     + ++VM FGL NAPATF  L+  V +G +++  L +LDD++   G+ F  HL NL K+F+R+  ANLK  L KC F   +V +LGH+I+  G K +P + KAV    RP +   +R FLGL +YYR+FV+ FS IA+PL++LT +      WT++CE S+ +LK  L S+PIL YPR D+ FI++TDAS +G+GAVLSQ
Sbjct:    7 KKDSYPLPRIDDTLDALNGSQWFTTLDLKGGYWQIEIRPEDREKTAFTTGQGLWQFKVMPFGLCNAPATFERLMETVLRGLSSEACLVYLDDIII-VGRTFEEHLNNLRKVFQRLQKANLKLNLKKCRFFQKEVTYLGHVISA-GVKTDPEKIKAVVDWPRPETVHDLRSFLGLCTYYRRFVKNFSTIARPLHKLT-EAKSNFNWTEECEKSFNSLKQALTSSPILTYPRTDKDFILDTDASNEGIGAVLSQ 255          
BLAST of mRNA_H-akashiwo_Contig1243.3.1 vs. uniprot
Match: A0A4Y2I107_ARAVE (Retrovirus-related Pol polyprotein from transposon 297 n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2I107_ARAVE)

HSP 1 Score: 230 bits (586), Expect = 5.710e-68
Identity = 117/252 (46.43%), Postives = 163/252 (64.68%), Query Frame = 1
Query:   10 KEGKVSLPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWRVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREG*KLNPRR*KAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKRVEWTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQ 765
            K+    LP   +  D L GS +F+++D+   YW I +R  DR KTAFT     + ++VM FGL NAP TF  L+  V +G +++  L +LDD++   G+ F  HL NL K+F+R+  ANLK  L KC F   +V +LGH+I+ EG K +P + KAV    RP +   +R FLGL +YYR+FV+ FS IAKPLY+LT +      WT++CE S+ +LK  L S+PIL YPR D+ FI++TDAS +G+GAVLSQ
Sbjct:  165 KKDSYPLPRIDDTLDALNGSQWFTTLDLKSGYWQIEIRPEDREKTAFTTGQGLWQFKVMPFGLCNAPETFERLMETVLRGLSSEACLVYLDDIII-VGRTFEEHLNNLRKVFQRLQKANLKLNLKKCRFFQKEVTYLGHVISAEGVKTDPEKIKAVVDWPRPETVHDLRSFLGLCTYYRRFVKNFSTIAKPLYKLT-EAKSNFNWTEECEKSFNSLKQALTSSPILTYPRTDKDFILDTDASNEGIGAVLSQ 414          
BLAST of mRNA_H-akashiwo_Contig1243.3.1 vs. uniprot
Match: A0A4Y2LUR4_ARAVE (RNA-directed DNA polymerase (Fragment) n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2LUR4_ARAVE)

HSP 1 Score: 230 bits (586), Expect = 6.800e-68
Identity = 117/252 (46.43%), Postives = 164/252 (65.08%), Query Frame = 1
Query:   10 KEGKVSLPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWRVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREG*KLNPRR*KAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKRVEWTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQ 765
            K+    LP   +  D L GS +F+++D+   YW I +R  DR KTAFT     + ++VM FGL NAPATF  L+  V +G +++  L +LDD++   G+ F  HL NL K+F+R+  ANLK  L KC F   +V +LGH+I+ EG K +P + KAV    RP +   +R FLGL +YYR+FV+ FS IAKPL++LT +      WT++CE S+ +LK  L S+PIL YPR D+ FI++TDAS +G+GAVLSQ
Sbjct:   31 KKDSYPLPRIDDTLDALNGSQWFTTLDLKSGYWQIEIRPEDREKTAFTTGQGLWQFKVMPFGLCNAPATFERLMETVLRGLSSEACLVYLDDIII-VGRTFEEHLNNLRKVFQRLQKANLKLNLKKCRFFQKEVTYLGHVISAEGVKTDPEKIKAVVDWPRPETVHDLRSFLGLCTYYRRFVKNFSTIAKPLHKLT-EAKSNFNWTEECEKSFNSLKQALTSSPILTYPRTDKDFILDTDASNEGIGAVLSQ 280          
BLAST of mRNA_H-akashiwo_Contig1243.3.1 vs. uniprot
Match: A0A4Y2QNW9_ARAVE (Retrovirus-related Pol polyprotein from transposon 297 (Fragment) n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2QNW9_ARAVE)

HSP 1 Score: 230 bits (586), Expect = 1.530e-67
Identity = 117/252 (46.43%), Postives = 164/252 (65.08%), Query Frame = 1
Query:   10 KEGKVSLPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWRVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREG*KLNPRR*KAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKRVEWTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQ 765
            K+    LP   +  D L GS +F+++D+   YW I +R  DR KTAFT     + ++VM FGL NAPATF  L+  V +G +++  L +LDD++   G+ F  HL NL K+F+R+  ANLK  L KC F   +V +LGH+I+ EG K +P + KAV    RP +   +R FLGL +YYR+FV+ FS IAKPL++LT +      WT++CE S+ +LK  L S+PIL YPR D+ FI++TDAS +G+GAVLSQ
Sbjct:  329 KKDSYPLPRIDDTLDALNGSQWFTTLDLKSGYWQIEIRPEDREKTAFTTGQGLWQFKVMPFGLCNAPATFERLMETVLRGLSSEACLVYLDDIII-VGRTFEEHLNNLRKVFQRLQKANLKLNLKKCRFFQKEVTYLGHVISAEGVKTDPEKIKAVVDWPRPETVHDLRSFLGLCTYYRRFVKNFSTIAKPLHKLT-EAKSNFNWTEECEKSFNSLKQALTSSPILTYPRTDKDFILDTDASNEGIGAVLSQ 578          
BLAST of mRNA_H-akashiwo_Contig1243.3.1 vs. uniprot
Match: A0A4Y2S6G1_ARAVE (Retrovirus-related Pol polyprotein from transposon 297 n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2S6G1_ARAVE)

HSP 1 Score: 221 bits (564), Expect = 2.570e-67
Identity = 114/252 (45.24%), Postives = 161/252 (63.89%), Query Frame = 1
Query:   10 KEGKVSLPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWRVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREG*KLNPRR*KAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKRVEWTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQ 765
            K+    LP   +  D L GS +F+++D+   YW I +R  DR KTAFT     + ++VM FGL NAPATF  L+  V +G +++  L +LDD++   G+ F  HL NL K+F+R+  ANLK  L K  F   +V +LGH+I+ EG K +P + KAV    RP +   +R FLGL +YYR+FV+ FS IAKPL++LT +      W ++CE S+ +LK  L S+PIL YPR D+ FI++ DAS +G+GAVLSQ
Sbjct:   77 KKDSYPLPRIDDTLDALNGSQWFTTLDLKSGYWQIEIRPEDREKTAFTTGQGLWQFKVMPFGLCNAPATFERLMETVLRGLSSEACLVYLDDIII-VGRTFEEHLNNLRKVFQRLQKANLKLNLKKWRFFQKEVTYLGHVISAEGVKTDPEKIKAVVDWPRPETVHDLRSFLGLCTYYRRFVKNFSTIAKPLHKLT-EAKSNFNWLEECEKSFNSLKQALTSSPILTYPRTDKDFILDADASNEGIGAVLSQ 326          
BLAST of mRNA_H-akashiwo_Contig1243.3.1 vs. uniprot
Match: A0A4Y2H7A8_ARAVE (Retrovirus-related Pol polyprotein from transposon 297 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2H7A8_ARAVE)

HSP 1 Score: 221 bits (564), Expect = 1.020e-66
Identity = 112/252 (44.44%), Postives = 161/252 (63.89%), Query Frame = 1
Query:   10 KEGKVSLPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWRVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREG*KLNPRR*KAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKRVEWTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQ 765
            K+    LP   +  D L GS +F+++D+   YW + +R  DR KTAFT     + ++VM FGL NAPATF  L+  V +G +++  L +LDD++   G+ F  HL NL K+F+R+  ANLK    KC F   +V +LGH+I+ EG K +P + KAV    RP +   ++ FLGL +YYR+FV+ FS IA+PL++ T +      WT++CE S+  LK  L S+PIL YPR D+ FI++TDAS +G+GAVLSQ
Sbjct:    5 KKDSYPLPRIDDTLDALNGSQWFTTLDLKSGYWQVEVRPEDREKTAFTTGQGLWQFKVMPFGLCNAPATFERLMETVLRGLSSEACLVYLDDIII-VGRTFEEHLNNLRKVFQRLQKANLKLSPKKCRFFQKEVTYLGHVISAEGVKTDPGKIKAVVDWPRPETVHDLKSFLGLCTYYRRFVKNFSTIARPLHKFT-EAKSNFNWTEECEKSFNNLKQALTSSPILTYPRTDKDFILDTDASNEGIGAVLSQ 254          
BLAST of mRNA_H-akashiwo_Contig1243.3.1 vs. uniprot
Match: A0A4Y2HRQ6_ARAVE (Retrovirus-related Pol polyprotein from transposon 297 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2HRQ6_ARAVE)

HSP 1 Score: 225 bits (573), Expect = 1.640e-66
Identity = 114/252 (45.24%), Postives = 160/252 (63.49%), Query Frame = 1
Query:   10 KEGKVSLPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWRVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREG*KLNPRR*KAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKRVEWTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQ 765
            K+    LP   +  D L GS +F+++D+   YW + +R  DR KTAFT  +  + + VM FGL NAPATF  L+  V +G +++  L +LDD++   G+ F  HL NL K+F+R+  ANLK    KC F   +V +LGH+I+ EG K +P + KAV    RP     +R FLGL +YYR FV+ FS IA+PL++LT +      WTD+CE S+ +LK  L S PI+ YPR D+ FI++TDAS +G+GAVLSQ
Sbjct:  198 KKDSYPLPRIDDTLDSLNGSQWFTTLDLKSGYWQVEIRPEDREKTAFTTGHGLWQFNVMPFGLCNAPATFERLMETVLRGLSSEACLIYLDDIII-VGQTFEEHLNNLRKVFQRIQKANLKLNPKKCRFFQKEVAYLGHVISEEGVKTDPEKIKAVVDWPRPDKIHDIRSFLGLCTYYRLFVKNFSTIARPLHKLT-EAKSNFNWTDECEKSFNSLKQALTSAPIMTYPRIDKDFILDTDASNEGIGAVLSQ 447          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1243.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XU57_HETAK4.590e-12870.68Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3XVA0_HETAK1.700e-12268.67Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3XV63_HETAK4.010e-12068.67Hypothetical protein (Fragment) n=3 Tax=Heterosigm... [more]
A0A4Y2TZG3_ARAVE2.900e-6845.63Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2I107_ARAVE5.710e-6846.43Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2LUR4_ARAVE6.800e-6846.43RNA-directed DNA polymerase (Fragment) n=2 Tax=Ara... [more]
A0A4Y2QNW9_ARAVE1.530e-6746.43Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2S6G1_ARAVE2.570e-6745.24Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2H7A8_ARAVE1.020e-6644.44Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2HRQ6_ARAVE1.640e-6645.24Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1243contigH-akashiwo_Contig1243:242120..242884 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog27289.XP_003670625.1
PFAMsPeptidase_A2E,RVT_1,rve
Model size765
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003964,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006278,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071897,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576
Exons1
Evalue1.03e-28
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3NVKU@4751|Fungi,3QP1S@4890|Ascomycota,3RRCD@4891|Saccharomycetes,3RZKH@4893|Saccharomycetaceae
Descriptionretrotransposon
Cds size402
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387130.1702979-UTR-H-akashiwo_Contig1243:242119..2424371681387130.1702979-UTR-H-akashiwo_Contig1243:242119..242437Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1243 242120..242437 -
1681387130.189898-UTR-H-akashiwo_Contig1243:242839..2428841681387130.189898-UTR-H-akashiwo_Contig1243:242839..242884Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1243 242840..242884 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387130.180746-CDS-H-akashiwo_Contig1243:242437..2428391681387130.180746-CDS-H-akashiwo_Contig1243:242437..242839Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1243 242438..242839 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1243.3.1prot_H-akashiwo_Contig1243.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1243 242438..242839 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1243.3.1

>prot_H-akashiwo_Contig1243.3.1 ID=prot_H-akashiwo_Contig1243.3.1|Name=mRNA_H-akashiwo_Contig1243.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=134bp
MFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWRVMCFG
LTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIF
KRMIAANLKFKLPKCLFGASQVPWLGHIITREG*
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mRNA from alignment at H-akashiwo_Contig1243:242120..242884-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1243.3.1 ID=mRNA_H-akashiwo_Contig1243.3.1|Name=mRNA_H-akashiwo_Contig1243.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=765bp|location=Sequence derived from alignment at H-akashiwo_Contig1243:242120..242884- (Heterosigma akashiwo CCMP452)
CCAGATTACAAAGAAGGCAAAGTTTCCTTGCCTACAACAAGAGAAATGTT TGATCAACTAGCAGGCAGTTGGTATTTCTCAAGCATGGATATGTTATGGG CATATTGGAGTATACCACTCAGAGAGACAGACAGGCACAAAACAGCATTC ACACTAAGGAACAAGAAATATTGCTGGAGAGTGATGTGTTTTGGACTTAC AAATGCACCAGCAACATTTTCACATCTGGTGAACAAAGTCTTCCAAGGAT ACAACAACGACTTTGCATTATGTTTCCTAGATGACGTACTAGCTCACTCA GGAAAGGAATTCAGTACACACTTACTGAACTTGGAAAAGATTTTCAAGAG GATGATAGCAGCCAATCTGAAGTTCAAGTTGCCGAAATGCTTGTTCGGGG CTTCACAAGTACCATGGCTGGGACACATCATCACAAGAGAAGGATAAAAA CTGAACCCCAGAAGATAGAAGGCAGTGAAAGGAATGAGAAGACCTGCATC GAAAAAACAAGTCAGGCAATTTCTAGGGTTGGCATCCTACTACAGACAGT TCGTAGAGGGATTTTCAGAAATTGCAAAACCACTATACCAACTGACGAAG GATACACCAAAAAGGGTGGAATGGACCGATGATTGTGAATGGTCATGGCA GACACTGAAGGACAAACTAGTGTCAACACCAATACTGATATACCCAAGGT TCGATAGACCCTTCATAGTGGAAACGGATGCATCAGGACAAGGATTGGGA GCTGTATTATCACAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1243:242120..242884-

>mRNA_H-akashiwo_Contig1243.3.1 ID=mRNA_H-akashiwo_Contig1243.3.1|Name=mRNA_H-akashiwo_Contig1243.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=402bp|location=Sequence derived from alignment at H-akashiwo_Contig1243:242120..242884- (Heterosigma akashiwo CCMP452)
ATGTTTGATCAACTAGCAGGCAGTTGGTATTTCTCAAGCATGGATATGTT
ATGGGCATATTGGAGTATACCACTCAGAGAGACAGACAGGCACAAAACAG
CATTCACACTAAGGAACAAGAAATATTGCTGGAGAGTGATGTGTTTTGGA
CTTACAAATGCACCAGCAACATTTTCACATCTGGTGAACAAAGTCTTCCA
AGGATACAACAACGACTTTGCATTATGTTTCCTAGATGACGTACTAGCTC
ACTCAGGAAAGGAATTCAGTACACACTTACTGAACTTGGAAAAGATTTTC
AAGAGGATGATAGCAGCCAATCTGAAGTTCAAGTTGCCGAAATGCTTGTT
CGGGGCTTCACAAGTACCATGGCTGGGACACATCATCACAAGAGAAGGAT
AA
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