mRNA_H-akashiwo_Contig1243.3.1 (mRNA) Heterosigma akashiwo CCMP452
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Overview
Homology
BLAST of mRNA_H-akashiwo_Contig1243.3.1 vs. uniprot
Match: A0A7S3XU57_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU57_HETAK) HSP 1 Score: 374 bits (961), Expect = 4.590e-128 Identity = 176/249 (70.68%), Postives = 208/249 (83.53%), Query Frame = 1
Query: 19 KVSLPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWRVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREG*KLNPRR*KAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKRVEWTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQ 765
K LPT REMFDQL G++YFSS+DMLWAYWS+PLR+ D+HKTAFT+RNKKY + VMCFGLTNAPATFSHLVNKVFQG +DFALCFLDDVL ++G +FS HL LE+IF RMI ANLKFKLPKCLFGA+QVP+LGHI TREG K +P++ +A+K ++RP +KKQVRQ LGLASYYRQFV F+ A PLY LTK PK VEWTDDCEW++Q LKD L + PILI+P F++ F +ETDAS GLGA+LSQ
Sbjct: 26 KFPLPTPREMFDQLEGAYYFSSLDMLWAYWSVPLRDEDKHKTAFTVRNKKYAFNVMCFGLTNAPATFSHLVNKVFQGCQHDFALCFLDDVLCYTGPDFSLHLRQLEEIFIRMIKANLKFKLPKCLFGAAQVPFLGHIATREGLKPDPKKIEAIKKLQRPQTKKQVRQVLGLASYYRQFVPNFAATAAPLYTLTKKEPKGVEWTDDCEWAFQNLKDTLTTAPILIFPNFNKEFTIETDASKHGLGAILSQ 274
BLAST of mRNA_H-akashiwo_Contig1243.3.1 vs. uniprot
Match: A0A7S3XVA0_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVA0_HETAK) HSP 1 Score: 367 bits (941), Expect = 1.700e-122 Identity = 171/249 (68.67%), Postives = 208/249 (83.53%), Query Frame = 1
Query: 19 KVSLPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWRVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREG*KLNPRR*KAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKRVEWTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQ 765
K LPT REMFD LA ++YF+S+DMLWAYWS+PLRE D+ KTAFT+RN+KY + VMCFGLTNAPATFSHLVNKVFQG +FALCFLDDVL +S + F+ HL +L +IFKRM AANLKFKLPKC+FGA+Q+P+LGH+ +REG K +P++ +AV+ +RRP SKKQVRQ LGLASYYRQFV F+ IA PLY+LTKD PK V W DDCEW++Q +KD L S P+L+YPR+D+PFIVETDAS GLGA+L Q
Sbjct: 164 KFPLPTAREMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPFLGHLASREGLKPDPKKIEAVRKLRRPESKKQVRQLLGLASYYRQFVPNFASIAAPLYKLTKDKPKGVLWDDDCEWAFQEIKDSLTSAPVLMYPRWDKPFIVETDASKTGLGAILLQ 412
BLAST of mRNA_H-akashiwo_Contig1243.3.1 vs. uniprot
Match: A0A7S3XV63_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV63_HETAK) HSP 1 Score: 367 bits (941), Expect = 4.010e-120 Identity = 171/249 (68.67%), Postives = 208/249 (83.53%), Query Frame = 1
Query: 19 KVSLPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWRVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREG*KLNPRR*KAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKRVEWTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQ 765
K LPT REMFD LA ++YF+S+DMLWAYWS+PLRE D+ KTAFT+RN+KY + VMCFGLTNAPATFSHLVNKVFQG +FALCFLDDVL +S + F+ HL +L +IFKRM AANLKFKLPKC+FGA+Q+P+LGH+ +REG K +P++ +AV+ +RRP SKKQVRQ LGLASYYRQFV F+ IA PLY+LTKD PK V W DDCEW++Q +KD L S P+L+YPR+D+PFIVETDAS GLGA+L Q
Sbjct: 164 KFPLPTAREMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPFLGHLASREGLKPDPKKIEAVRKLRRPESKKQVRQLLGLASYYRQFVPNFASIAAPLYKLTKDKPKGVLWDDDCEWAFQEIKDSLTSAPVLMYPRWDKPFIVETDASKTGLGAILLQ 412
BLAST of mRNA_H-akashiwo_Contig1243.3.1 vs. uniprot
Match: A0A4Y2TZG3_ARAVE (Retrovirus-related Pol polyprotein from transposon 297 (Fragment) n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2TZG3_ARAVE) HSP 1 Score: 223 bits (567), Expect = 2.900e-68 Identity = 115/252 (45.63%), Postives = 163/252 (64.68%), Query Frame = 1
Query: 10 KEGKVSLPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWRVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREG*KLNPRR*KAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKRVEWTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQ 765
K+ LP + D L GS +F+++D+ YW I +R DR KTAFT + ++VM FGL NAPATF L+ V +G +++ L +LDD++ G+ F HL NL K+F+R+ ANLK L KC F +V +LGH+I+ G K +P + KAV RP + +R FLGL +YYR+FV+ FS IA+PL++LT + WT++CE S+ +LK L S+PIL YPR D+ FI++TDAS +G+GAVLSQ
Sbjct: 7 KKDSYPLPRIDDTLDALNGSQWFTTLDLKGGYWQIEIRPEDREKTAFTTGQGLWQFKVMPFGLCNAPATFERLMETVLRGLSSEACLVYLDDIII-VGRTFEEHLNNLRKVFQRLQKANLKLNLKKCRFFQKEVTYLGHVISA-GVKTDPEKIKAVVDWPRPETVHDLRSFLGLCTYYRRFVKNFSTIARPLHKLT-EAKSNFNWTEECEKSFNSLKQALTSSPILTYPRTDKDFILDTDASNEGIGAVLSQ 255
BLAST of mRNA_H-akashiwo_Contig1243.3.1 vs. uniprot
Match: A0A4Y2I107_ARAVE (Retrovirus-related Pol polyprotein from transposon 297 n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2I107_ARAVE) HSP 1 Score: 230 bits (586), Expect = 5.710e-68 Identity = 117/252 (46.43%), Postives = 163/252 (64.68%), Query Frame = 1
Query: 10 KEGKVSLPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWRVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREG*KLNPRR*KAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKRVEWTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQ 765
K+ LP + D L GS +F+++D+ YW I +R DR KTAFT + ++VM FGL NAP TF L+ V +G +++ L +LDD++ G+ F HL NL K+F+R+ ANLK L KC F +V +LGH+I+ EG K +P + KAV RP + +R FLGL +YYR+FV+ FS IAKPLY+LT + WT++CE S+ +LK L S+PIL YPR D+ FI++TDAS +G+GAVLSQ
Sbjct: 165 KKDSYPLPRIDDTLDALNGSQWFTTLDLKSGYWQIEIRPEDREKTAFTTGQGLWQFKVMPFGLCNAPETFERLMETVLRGLSSEACLVYLDDIII-VGRTFEEHLNNLRKVFQRLQKANLKLNLKKCRFFQKEVTYLGHVISAEGVKTDPEKIKAVVDWPRPETVHDLRSFLGLCTYYRRFVKNFSTIAKPLYKLT-EAKSNFNWTEECEKSFNSLKQALTSSPILTYPRTDKDFILDTDASNEGIGAVLSQ 414
BLAST of mRNA_H-akashiwo_Contig1243.3.1 vs. uniprot
Match: A0A4Y2LUR4_ARAVE (RNA-directed DNA polymerase (Fragment) n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2LUR4_ARAVE) HSP 1 Score: 230 bits (586), Expect = 6.800e-68 Identity = 117/252 (46.43%), Postives = 164/252 (65.08%), Query Frame = 1
Query: 10 KEGKVSLPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWRVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREG*KLNPRR*KAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKRVEWTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQ 765
K+ LP + D L GS +F+++D+ YW I +R DR KTAFT + ++VM FGL NAPATF L+ V +G +++ L +LDD++ G+ F HL NL K+F+R+ ANLK L KC F +V +LGH+I+ EG K +P + KAV RP + +R FLGL +YYR+FV+ FS IAKPL++LT + WT++CE S+ +LK L S+PIL YPR D+ FI++TDAS +G+GAVLSQ
Sbjct: 31 KKDSYPLPRIDDTLDALNGSQWFTTLDLKSGYWQIEIRPEDREKTAFTTGQGLWQFKVMPFGLCNAPATFERLMETVLRGLSSEACLVYLDDIII-VGRTFEEHLNNLRKVFQRLQKANLKLNLKKCRFFQKEVTYLGHVISAEGVKTDPEKIKAVVDWPRPETVHDLRSFLGLCTYYRRFVKNFSTIAKPLHKLT-EAKSNFNWTEECEKSFNSLKQALTSSPILTYPRTDKDFILDTDASNEGIGAVLSQ 280
BLAST of mRNA_H-akashiwo_Contig1243.3.1 vs. uniprot
Match: A0A4Y2QNW9_ARAVE (Retrovirus-related Pol polyprotein from transposon 297 (Fragment) n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2QNW9_ARAVE) HSP 1 Score: 230 bits (586), Expect = 1.530e-67 Identity = 117/252 (46.43%), Postives = 164/252 (65.08%), Query Frame = 1
Query: 10 KEGKVSLPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWRVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREG*KLNPRR*KAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKRVEWTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQ 765
K+ LP + D L GS +F+++D+ YW I +R DR KTAFT + ++VM FGL NAPATF L+ V +G +++ L +LDD++ G+ F HL NL K+F+R+ ANLK L KC F +V +LGH+I+ EG K +P + KAV RP + +R FLGL +YYR+FV+ FS IAKPL++LT + WT++CE S+ +LK L S+PIL YPR D+ FI++TDAS +G+GAVLSQ
Sbjct: 329 KKDSYPLPRIDDTLDALNGSQWFTTLDLKSGYWQIEIRPEDREKTAFTTGQGLWQFKVMPFGLCNAPATFERLMETVLRGLSSEACLVYLDDIII-VGRTFEEHLNNLRKVFQRLQKANLKLNLKKCRFFQKEVTYLGHVISAEGVKTDPEKIKAVVDWPRPETVHDLRSFLGLCTYYRRFVKNFSTIAKPLHKLT-EAKSNFNWTEECEKSFNSLKQALTSSPILTYPRTDKDFILDTDASNEGIGAVLSQ 578
BLAST of mRNA_H-akashiwo_Contig1243.3.1 vs. uniprot
Match: A0A4Y2S6G1_ARAVE (Retrovirus-related Pol polyprotein from transposon 297 n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2S6G1_ARAVE) HSP 1 Score: 221 bits (564), Expect = 2.570e-67 Identity = 114/252 (45.24%), Postives = 161/252 (63.89%), Query Frame = 1
Query: 10 KEGKVSLPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWRVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREG*KLNPRR*KAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKRVEWTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQ 765
K+ LP + D L GS +F+++D+ YW I +R DR KTAFT + ++VM FGL NAPATF L+ V +G +++ L +LDD++ G+ F HL NL K+F+R+ ANLK L K F +V +LGH+I+ EG K +P + KAV RP + +R FLGL +YYR+FV+ FS IAKPL++LT + W ++CE S+ +LK L S+PIL YPR D+ FI++ DAS +G+GAVLSQ
Sbjct: 77 KKDSYPLPRIDDTLDALNGSQWFTTLDLKSGYWQIEIRPEDREKTAFTTGQGLWQFKVMPFGLCNAPATFERLMETVLRGLSSEACLVYLDDIII-VGRTFEEHLNNLRKVFQRLQKANLKLNLKKWRFFQKEVTYLGHVISAEGVKTDPEKIKAVVDWPRPETVHDLRSFLGLCTYYRRFVKNFSTIAKPLHKLT-EAKSNFNWLEECEKSFNSLKQALTSSPILTYPRTDKDFILDADASNEGIGAVLSQ 326
BLAST of mRNA_H-akashiwo_Contig1243.3.1 vs. uniprot
Match: A0A4Y2H7A8_ARAVE (Retrovirus-related Pol polyprotein from transposon 297 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2H7A8_ARAVE) HSP 1 Score: 221 bits (564), Expect = 1.020e-66 Identity = 112/252 (44.44%), Postives = 161/252 (63.89%), Query Frame = 1
Query: 10 KEGKVSLPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWRVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREG*KLNPRR*KAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKRVEWTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQ 765
K+ LP + D L GS +F+++D+ YW + +R DR KTAFT + ++VM FGL NAPATF L+ V +G +++ L +LDD++ G+ F HL NL K+F+R+ ANLK KC F +V +LGH+I+ EG K +P + KAV RP + ++ FLGL +YYR+FV+ FS IA+PL++ T + WT++CE S+ LK L S+PIL YPR D+ FI++TDAS +G+GAVLSQ
Sbjct: 5 KKDSYPLPRIDDTLDALNGSQWFTTLDLKSGYWQVEVRPEDREKTAFTTGQGLWQFKVMPFGLCNAPATFERLMETVLRGLSSEACLVYLDDIII-VGRTFEEHLNNLRKVFQRLQKANLKLSPKKCRFFQKEVTYLGHVISAEGVKTDPGKIKAVVDWPRPETVHDLKSFLGLCTYYRRFVKNFSTIARPLHKFT-EAKSNFNWTEECEKSFNNLKQALTSSPILTYPRTDKDFILDTDASNEGIGAVLSQ 254
BLAST of mRNA_H-akashiwo_Contig1243.3.1 vs. uniprot
Match: A0A4Y2HRQ6_ARAVE (Retrovirus-related Pol polyprotein from transposon 297 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2HRQ6_ARAVE) HSP 1 Score: 225 bits (573), Expect = 1.640e-66 Identity = 114/252 (45.24%), Postives = 160/252 (63.49%), Query Frame = 1
Query: 10 KEGKVSLPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWRVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREG*KLNPRR*KAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKRVEWTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQ 765
K+ LP + D L GS +F+++D+ YW + +R DR KTAFT + + + VM FGL NAPATF L+ V +G +++ L +LDD++ G+ F HL NL K+F+R+ ANLK KC F +V +LGH+I+ EG K +P + KAV RP +R FLGL +YYR FV+ FS IA+PL++LT + WTD+CE S+ +LK L S PI+ YPR D+ FI++TDAS +G+GAVLSQ
Sbjct: 198 KKDSYPLPRIDDTLDSLNGSQWFTTLDLKSGYWQVEIRPEDREKTAFTTGHGLWQFNVMPFGLCNAPATFERLMETVLRGLSSEACLIYLDDIII-VGQTFEEHLNNLRKVFQRIQKANLKLNPKKCRFFQKEVAYLGHVISEEGVKTDPEKIKAVVDWPRPDKIHDIRSFLGLCTYYRLFVKNFSTIARPLHKLT-EAKSNFNWTDECEKSFNSLKQALTSAPIMTYPRIDKDFILDTDASNEGIGAVLSQ 447 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1243.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig1243.3.1 >prot_H-akashiwo_Contig1243.3.1 ID=prot_H-akashiwo_Contig1243.3.1|Name=mRNA_H-akashiwo_Contig1243.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=134bp MFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWRVMCFGback to top mRNA from alignment at H-akashiwo_Contig1243:242120..242884- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig1243.3.1 ID=mRNA_H-akashiwo_Contig1243.3.1|Name=mRNA_H-akashiwo_Contig1243.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=765bp|location=Sequence derived from alignment at H-akashiwo_Contig1243:242120..242884- (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig1243:242120..242884- >mRNA_H-akashiwo_Contig1243.3.1 ID=mRNA_H-akashiwo_Contig1243.3.1|Name=mRNA_H-akashiwo_Contig1243.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=402bp|location=Sequence derived from alignment at H-akashiwo_Contig1243:242120..242884- (Heterosigma akashiwo CCMP452)back to top |