mRNA_H-akashiwo_Contig1235.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1235.4.1
Unique NamemRNA_H-akashiwo_Contig1235.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1235.4.1 vs. uniprot
Match: A0A7S3XZC7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZC7_HETAK)

HSP 1 Score: 191 bits (485), Expect = 7.970e-58
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 2 
Query:    2 RQAQKLRADSSAVKASEEFKGLTVVPTAPPEGDGGDEYDERQATSLAADPESALREDIPVVMHPGRTRAQGFLTHAKAGAGQAYVEPGEEQGVHQLP 292
            RQAQKLRADSSAVKASEEFKGLTVVPTAPPEGDGGDEYDERQATSLAADPESALREDIPVVMHPGRTRAQGFLTHAKAGAGQAYVEPGEEQGVHQLP
Sbjct:   39 RQAQKLRADSSAVKASEEFKGLTVVPTAPPEGDGGDEYDERQATSLAADPESALREDIPVVMHPGRTRAQGFLTHAKAGAGQAYVEPGEEQGVHQLP 135
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1235.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XZC7_HETAK7.970e-58100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1235contigH-akashiwo_Contig1235:280383..280882 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size294
Hectar predicted targeting categoryother localisation
Exons2
Cds size294
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387127.9834816-CDS-H-akashiwo_Contig1235:280382..2805491681387127.9834816-CDS-H-akashiwo_Contig1235:280382..280549Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1235 280383..280549 -
1681387127.9949489-CDS-H-akashiwo_Contig1235:280755..2808821681387127.9949489-CDS-H-akashiwo_Contig1235:280755..280882Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1235 280756..280882 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1235.4.1prot_H-akashiwo_Contig1235.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1235 280383..280882 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1235.4.1

>prot_H-akashiwo_Contig1235.4.1 ID=prot_H-akashiwo_Contig1235.4.1|Name=mRNA_H-akashiwo_Contig1235.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=98bp
AAGAEAAGGLQRGEGQRGVQGADRGAHRPAGGRRRGRVRRAAGDLPGGGP
GERAAGGHPGGDAPRKDPRAGVPDPRQGGRGPGVRGAGGGAGRAPAAG
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mRNA from alignment at H-akashiwo_Contig1235:280383..280882-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1235.4.1 ID=mRNA_H-akashiwo_Contig1235.4.1|Name=mRNA_H-akashiwo_Contig1235.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=500bp|location=Sequence derived from alignment at H-akashiwo_Contig1235:280383..280882- (Heterosigma akashiwo CCMP452)
GCGGCAGGCGCAGAAGCTGCGGGCGGACTCCAGCGCGGTGAAGGCCAGCG
AGGAGTTCAAGGGGCTGACCGTGGTGCCCACCGCCCCGCCGGAGGGCGAC
GGCGGGGACGAGTACGACGAGCGGCAGGTGATTTTTTTTTTTTTTTTTTT
TTTCCCGTGTGCTCAGGTCTCAGGCAGAACGTGGATGCACCATTTCGGAG
TTCCAAAGTGCTTGGGGCATAGGGAGGATCGAGCAATCATGCTGTTCACT
TCGGCACACTCTAACAAAGTCTTCACCTTCGTGTTCTCTGCCTGGACCCT
CCCCCACCCCCCCCCCCGGCAAAACGGGCGCAGGCGACCTCCCTGGCGGC
GGACCCGGAGAGCGCGCTGCGGGAGGACATCCCGGTGGTGATGCACCCCG
GAAGGACCCGCGCGCAGGGGTTCCTGACCCACGCCAAGGCGGGCGCGGGC
CAGGCGTACGTGGAGCCGGGGGAGGAGCAGGGCGTGCACCAGCTGCCGGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1235:280383..280882-

>mRNA_H-akashiwo_Contig1235.4.1 ID=mRNA_H-akashiwo_Contig1235.4.1|Name=mRNA_H-akashiwo_Contig1235.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=294bp|location=Sequence derived from alignment at H-akashiwo_Contig1235:280383..280882- (Heterosigma akashiwo CCMP452)
GCGGCAGGCGCAGAAGCTGCGGGCGGACTCCAGCGCGGTGAAGGCCAGCG
AGGAGTTCAAGGGGCTGACCGTGGTGCCCACCGCCCCGCCGGAGGGCGAC
GGCGGGGACGAGTACGACGAGCGGCAGGCGACCTCCCTGGCGGCGGACCC
GGAGAGCGCGCTGCGGGAGGACATCCCGGTGGTGATGCACCCCGGAAGGA
CCCGCGCGCAGGGGTTCCTGACCCACGCCAAGGCGGGCGCGGGCCAGGCG
TACGTGGAGCCGGGGGAGGAGCAGGGCGTGCACCAGCTGCCGGG
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