mRNA_H-akashiwo_Contig123.8.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig123.8.1
Unique NamemRNA_H-akashiwo_Contig123.8.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig123.8.1 vs. uniprot
Match: A0A5S6Q4K0_TRIMR (Beta-ketoacyl-[acyl-carrier-protein] synthase I n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6Q4K0_TRIMR)

HSP 1 Score: 57.4 bits (137), Expect = 4.070e-8
Identity = 27/59 (45.76%), Postives = 41/59 (69.49%), Query Frame = 3
Query:    6 SGITRLEEESFQRLPVQIAGKVPRGSGEYDFDEDRFFEKGEVSRLSTFMQYALVAADEA 182
            SGI +L EE F+++P ++A +VP+G  E+ FDE RF +  E  ++S    +ALVAA+EA
Sbjct:   84 SGIGKLTEEEFEKMPARVAAQVPKGKEEFQFDEKRFTD-AEWRQMSKATAFALVAAEEA 141          
BLAST of mRNA_H-akashiwo_Contig123.8.1 vs. uniprot
Match: UPI0015D51AD4 (beta-ketoacyl-ACP synthase II n=1 Tax=Azospirillum oleiclasticum TaxID=2735135 RepID=UPI0015D51AD4)

HSP 1 Score: 53.1 bits (126), Expect = 1.270e-6
Identity = 24/59 (40.68%), Postives = 36/59 (61.02%), Query Frame = 3
Query:    6 SGITRLEEESFQRLPVQIAGKVPRGSGEYDFDEDRFFEKGEVSRLSTFMQYALVAADEA 182
            SG+  + +     LP ++AG+VPRG GE  F+ DRF    E  ++  F+ YA+ AA+EA
Sbjct:   31 SGLGPITKFDVSDLPAKVAGEVPRGDGEGQFNPDRFIAPKEQRKMDEFIVYAIAAAEEA 89          
BLAST of mRNA_H-akashiwo_Contig123.8.1 vs. uniprot
Match: A0A8C5Q373_9ANUR (3-oxoacyl-[acyl-carrier-protein] synthase n=1 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5Q373_9ANUR)

HSP 1 Score: 53.1 bits (126), Expect = 1.270e-6
Identity = 22/58 (37.93%), Postives = 39/58 (67.24%), Query Frame = 3
Query:    9 GITRLEEESFQRLPVQIAGKVPRGSGEYDFDEDRFFEKGEVSRLSTFMQYALVAADEA 182
            GI  L+ + ++ LP ++A +VPRG+G+ +F E+R+  + +V  +S+    AL AA+EA
Sbjct:   71 GIDALDSDDYKNLPCRVAARVPRGTGDGEFHEERYVSRSDVKAMSSATVMALGAAEEA 128          
BLAST of mRNA_H-akashiwo_Contig123.8.1 vs. uniprot
Match: A0A8K0CKJ5_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0CKJ5_9COLE)

HSP 1 Score: 52.8 bits (125), Expect = 1.740e-6
Identity = 26/60 (43.33%), Postives = 40/60 (66.67%), Query Frame = 3
Query:    3 KSGITRLEEESFQRLPVQIAGKVPRGSGEYDFDEDRFFEKGEVSRLSTFMQYALVAADEA 182
            KSGIT+LE  S+++LP ++AG +    G  +F+ ++ F K E+   ST + YAL+AA EA
Sbjct:   31 KSGITKLEGPSYEKLPSRVAGVIRENGG--NFELNKHFSKSELRSTSTAIAYALLAAKEA 88          
BLAST of mRNA_H-akashiwo_Contig123.8.1 vs. uniprot
Match: UPI001BB108CB (3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB108CB)

HSP 1 Score: 52.8 bits (125), Expect = 1.740e-6
Identity = 23/60 (38.33%), Postives = 39/60 (65.00%), Query Frame = 3
Query:    3 KSGITRLEEESFQRLPVQIAGKVPRGSGEYDFDEDRFFEKGEVSRLSTFMQYALVAADEA 182
            +SGIT++  + F+ +P Q+AG VP+G+GE +FD  R+    ++  +S    ++L AA EA
Sbjct:   62 ESGITKITGDQFKGIPCQVAGFVPKGTGEGEFDALRYVSSSDLRSMSQATIFSLAAAQEA 121          
BLAST of mRNA_H-akashiwo_Contig123.8.1 vs. uniprot
Match: A0A7X2FXH9_9PROT (3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Alphaproteobacteria bacterium HT1-32 TaxID=2665153 RepID=A0A7X2FXH9_9PROT)

HSP 1 Score: 51.6 bits (122), Expect = 4.450e-6
Identity = 24/60 (40.00%), Postives = 37/60 (61.67%), Query Frame = 3
Query:    3 KSGITRLEEESFQRLPVQIAGKVPRGSGEYDFDEDRFFEKGEVSRLSTFMQYALVAADEA 182
            +SGIT + +   +RLP ++AG VP G GE +F+ D F    E  ++  F+ +A+ AA EA
Sbjct:   30 ESGITSITKFDTERLPSKVAGDVPLGDGEGNFNADNFILPKEQRKMDAFVIFAMAAAQEA 89          
BLAST of mRNA_H-akashiwo_Contig123.8.1 vs. uniprot
Match: A0A0K1QE53_9DELT (3-oxoacyl-[acyl-carrier-protein] synthase 2 n=2 Tax=Myxococcales TaxID=29 RepID=A0A0K1QE53_9DELT)

HSP 1 Score: 51.6 bits (122), Expect = 4.450e-6
Identity = 25/60 (41.67%), Postives = 37/60 (61.67%), Query Frame = 3
Query:    3 KSGITRLEEESFQRLPVQIAGKVPRGSGEYDFDEDRFFEKGEVSRLSTFMQYALVAADEA 182
            +SGI R+E      +P +IAG+VPRG G+ +F+        E+ RLS F+ +A+ AA EA
Sbjct:   30 QSGIRRIESFDVSDIPTKIAGQVPRGEGDGEFNPLALAPAKELRRLSDFILFAMAAASEA 89          
BLAST of mRNA_H-akashiwo_Contig123.8.1 vs. uniprot
Match: A0A484H4V3_9ZZZZ (3-oxoacyl-[acyl-carrier-protein] synthase, KASII n=1 Tax=invertebrate metagenome TaxID=1711999 RepID=A0A484H4V3_9ZZZZ)

HSP 1 Score: 51.2 bits (121), Expect = 6.080e-6
Identity = 28/60 (46.67%), Postives = 34/60 (56.67%), Query Frame = 3
Query:    3 KSGITRLEEESFQRLPVQIAGKVPRGSGEYDFDEDRFFEKGEVSRLSTFMQYALVAADEA 182
            +SGI  +       LP QIAG VPRGSGE  F+ D+F    E  R+  F+ YAL A  EA
Sbjct:   30 RSGIRAIGHFDVSDLPSQIAGIVPRGSGEGLFNPDQFVPPREQRRMDDFIIYALAATTEA 89          
BLAST of mRNA_H-akashiwo_Contig123.8.1 vs. uniprot
Match: R5XSK5_9PROT (3-oxoacyl-[acyl-carrier-protein] synthase 2 n=2 Tax=Acetobacter TaxID=434 RepID=R5XSK5_9PROT)

HSP 1 Score: 51.2 bits (121), Expect = 6.090e-6
Identity = 24/60 (40.00%), Postives = 35/60 (58.33%), Query Frame = 3
Query:    3 KSGITRLEEESFQRLPVQIAGKVPRGSGEYDFDEDRFFEKGEVSRLSTFMQYALVAADEA 182
            KSGI+R+E    + +PV IAG+VP G  E DF+ D  F   +  +   F+ Y + AA +A
Sbjct:   30 KSGISRIEGVDLKDIPVMIAGQVPFGENEPDFNPDTVFAPKDQKKNDKFIMYGMAAAGDA 89          
BLAST of mRNA_H-akashiwo_Contig123.8.1 vs. uniprot
Match: UPI000771D65C (3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial n=1 Tax=Cephus cinctus TaxID=211228 RepID=UPI000771D65C)

HSP 1 Score: 51.2 bits (121), Expect = 6.090e-6
Identity = 22/60 (36.67%), Postives = 36/60 (60.00%), Query Frame = 3
Query:    3 KSGITRLEEESFQRLPVQIAGKVPRGSGEYDFDEDRFFEKGEVSRLSTFMQYALVAADEA 182
            KSG+ +L+E  +++LP +I   VP+G   Y  + +  F K E+  +     YALVA++EA
Sbjct:   48 KSGVIKLDEPGYEKLPCKIGAVVPKGDKPYQLNIEAKFSKSEIRSMCPATAYALVASEEA 107          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig123.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5S6Q4K0_TRIMR4.070e-845.76Beta-ketoacyl-[acyl-carrier-protein] synthase I n=... [more]
UPI0015D51AD41.270e-640.68beta-ketoacyl-ACP synthase II n=1 Tax=Azospirillum... [more]
A0A8C5Q373_9ANUR1.270e-637.933-oxoacyl-[acyl-carrier-protein] synthase n=1 Tax=... [more]
A0A8K0CKJ5_9COLE1.740e-643.33Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
UPI001BB108CB1.740e-638.333-oxoacyl-[acyl-carrier-protein] synthase, mitocho... [more]
A0A7X2FXH9_9PROT4.450e-640.003-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Ta... [more]
A0A0K1QE53_9DELT4.450e-641.673-oxoacyl-[acyl-carrier-protein] synthase 2 n=2 Ta... [more]
A0A484H4V3_9ZZZZ6.080e-646.673-oxoacyl-[acyl-carrier-protein] synthase, KASII n... [more]
R5XSK5_9PROT6.090e-640.003-oxoacyl-[acyl-carrier-protein] synthase 2 n=2 Ta... [more]
UPI000771D65C6.090e-636.673-oxoacyl-[acyl-carrier-protein] synthase, mitocho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig123contigH-akashiwo_Contig123:749023..749573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size185
Hectar predicted targeting categoryother localisation
Exons3
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387126.8901193-CDS-H-akashiwo_Contig123:749022..7490781681387126.8901193-CDS-H-akashiwo_Contig123:749022..749078Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig123 749023..749078 +
1681387126.901179-CDS-H-akashiwo_Contig123:749206..7493051681387126.901179-CDS-H-akashiwo_Contig123:749206..749305Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig123 749207..749305 +
1681387126.9092488-CDS-H-akashiwo_Contig123:749543..7495711681387126.9092488-CDS-H-akashiwo_Contig123:749543..749571Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig123 749544..749571 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig123.8.1prot_H-akashiwo_Contig123.8.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig123 749023..749571 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig123.8.1

>prot_H-akashiwo_Contig123.8.1 ID=prot_H-akashiwo_Contig123.8.1|Name=mRNA_H-akashiwo_Contig123.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=61bp
GRVALRGWKKRAFNVSQFRSPGRYPEDLASMTLMKTVSSKRAKSAVCQRS
CSMLWWQLMKQ
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mRNA from alignment at H-akashiwo_Contig123:749023..749573+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig123.8.1 ID=mRNA_H-akashiwo_Contig123.8.1|Name=mRNA_H-akashiwo_Contig123.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=551bp|location=Sequence derived from alignment at H-akashiwo_Contig123:749023..749573+ (Heterosigma akashiwo CCMP452)
GGAAGAGTGGCATTACGCGGTTGGAAGAAGAGAGCTTTCAACGTCTCCCA GTTCAGGTTCCGTAGACGTGGCACCACTATGACAGAGCTACATGAAAATT ATCAGCTTGCATATTTACATTTCAAGAAACATGGATTTTTTAGTCTCATG TTTTATATTTTTGCCATTATGATATTGAAACTAGATCGCCGGGAAGGTAC CCAGAGGATCTGGCGAGTATGACTTTGATGAAGACCGTTTCTTCGAAAAG GGCGAAGTCAGCCGTTTGTCAACGTTCATGCAGGTATTTCAATGCATTTG GGATGGTGTTACTTGCATCTTCCTGAAGTGTGGGAATGTGCTCCTCTTGT AGGAAGCACGTCCAATCCATAAGAAGAAGTATACAATTCTTCATAATGAT AATAATTAATAATACCATACATGTATGTGGACATAGTTCCATCCTTCTGG TTTATTAACTAAAATGAAACCTCATAAATTTCTCAAGTAAAAACAACCTC CTTCTATATTTTCTGCACCAGTATGCTTTGGTGGCAGCTGATGAAGCAGT A
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Coding sequence (CDS) from alignment at H-akashiwo_Contig123:749023..749573+

>mRNA_H-akashiwo_Contig123.8.1 ID=mRNA_H-akashiwo_Contig123.8.1|Name=mRNA_H-akashiwo_Contig123.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=183bp|location=Sequence derived from alignment at H-akashiwo_Contig123:749023..749573+ (Heterosigma akashiwo CCMP452)
GGAAGAGTGGCATTACGCGGTTGGAAGAAGAGAGCTTTCAACGTCTCCCA
GTTCAGATCGCCGGGAAGGTACCCAGAGGATCTGGCGAGTATGACTTTGA
TGAAGACCGTTTCTTCGAAAAGGGCGAAGTCAGCCGTTTGTCAACGTTCA
TGCAGTATGCTTTGGTGGCAGCTGATGAAGCAG
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