mRNA_H-akashiwo_Contig123.13.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig123.13.1
Unique NamemRNA_H-akashiwo_Contig123.13.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig123.13.1 vs. uniprot
Match: A0A7S3UWR9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWR9_HETAK)

HSP 1 Score: 267 bits (682), Expect = 1.400e-84
Identity = 148/151 (98.01%), Postives = 148/151 (98.01%), Query Frame = 1 
Query:   76 MDEGRDPVVSGDVEAGEGTPLLPGRQETKGEEGTDSRSPSXXXXXXXXXXXXLYSDGGTSEGTGTNSTRKNKHIRNFDKLRAMLHKQLLEDDELFPSTGLKSSEAKERLKMYGENTLEKKQLNFVIRFLLQFCHPVPALVFMGMWVEYWLG 528
            MDEGRDPVVSGDVEAGEGTPLLPGRQETKGEEGTDSRSP XXXXXXXXXXXX YSDGGTSEGTGTNS RKNKHIRNFDKLRAMLHKQLLEDDELFPSTGLKSSEAKERLKMYGENTLEKKQLNFVIRFLLQFCHPVPALVFMGMWVEYWLG
Sbjct:    1 MDEGRDPVVSGDVEAGEGTPLLPGRQETKGEEGTDSRSPXXXXXXXXXXXXXXYSDGGTSEGTGTNSKRKNKHIRNFDKLRAMLHKQLLEDDELFPSTGLKSSEAKERLKMYGENTLEKKQLNFVIRFLLQFCHPVPALVFMGMWVEYWLG 151
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig123.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3UWR9_HETAK1.400e-8498.01Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig123contigH-akashiwo_Contig123:1199327..1200468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size530
Hectar predicted targeting categoryother localisation
Exons4
Cds size528
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387126.9785616-CDS-H-akashiwo_Contig123:1199326..11994751681387126.9785616-CDS-H-akashiwo_Contig123:1199326..1199475Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig123 1199327..1199475 +
1681387126.9875433-CDS-H-akashiwo_Contig123:1199639..11998751681387126.9875433-CDS-H-akashiwo_Contig123:1199639..1199875Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig123 1199640..1199875 +
1681387126.9982827-CDS-H-akashiwo_Contig123:1200019..12001021681387126.9982827-CDS-H-akashiwo_Contig123:1200019..1200102Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig123 1200020..1200102 +
1681387127.0076244-CDS-H-akashiwo_Contig123:1200407..12004671681387127.0076244-CDS-H-akashiwo_Contig123:1200407..1200467Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig123 1200408..1200467 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig123.13.1prot_H-akashiwo_Contig123.13.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig123 1199327..1200467 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig123.13.1

>prot_H-akashiwo_Contig123.13.1 ID=prot_H-akashiwo_Contig123.13.1|Name=mRNA_H-akashiwo_Contig123.13.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=176bp
SIQFLQGSRPLCVFCSSCEAPCVAIMDEGRDPVVSGDVEAGEGTPLLPGR
QETKGEEGTDSRSPSRSSKRSSSVRSSLYSDGGTSEGTGTNSTRKNKHIR
NFDKLRAMLHKQLLEDDELFPSTGLKSSEAKERLKMYGENTLEKKQLNFV
IRFLLQFCHPVPALVFMGMWVEYWLG
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mRNA from alignment at H-akashiwo_Contig123:1199327..1200468+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig123.13.1 ID=mRNA_H-akashiwo_Contig123.13.1|Name=mRNA_H-akashiwo_Contig123.13.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1142bp|location=Sequence derived from alignment at H-akashiwo_Contig123:1199327..1200468+ (Heterosigma akashiwo CCMP452)
TCGATTCAATTTCTTCAAGGCAGTCGACCGCTCTGTGTCTTCTGCAGCTC
TTGCGAAGCACCTTGCGTTGCCATCATGGACGAGGGGCGCGATCCAGTTG
TTTCTGGCGACGTAGAGGCAGGAGAGGGGACCCCTCTCCTACCCGGGAGG
TATTATTCTTCACGCTACTGTCCGTCACACACCACTACTGCCAGCTTTTT
CATCATGAATCCAAGAAGTGAATCAATTTAGAACAATGTTTGTTGGTGAA
CTCATGCTTATAATGATATAATACTTACTTACCTTTCAATTCTATGGATT
CGCGTCCTTACAGGCAAGAAACGAAAGGCGAGGAAGGCACCGATTCCCGG
AGCCCTTCTCGCTCGTCGAAACGCTCTTCTTCTGTTCGCTCTTCTCTTTA
CTCTGACGGCGGAACATCTGAAGGTACAGGCACCAATAGCACGCGTAAAA
ACAAGCATATTCGCAATTTTGACAAGCTGAGGGCCATGCTTCACAAGCAG
TTGCTCGAAGACGATGAGCTGTTCCCTTCAACCGGGCTAAAATCCTCGGG
TAAGTGATGTCATCCCCACCTATTTTTTCGTCAATCCCCAAACCCCAGAT
ATCGTCAAACGATGTCATCAGTTATCACGCAGCAACAATTTATACGCCAT
GTCCTGACATTTATACGCTATCTACTGACATTGACAATTTCAGAGGCCAA
GGAGCGCTTGAAAATGTATGGAGAGAACACGCTTGAAAAGAAACAATTAA
ATTTTGTAATCAGATTCCTTCTGCAGGTTGGGTTTGTCTGGGACATTATC
TATACATGGTGGACATGTGATCCAGATATAATAAGTGAATCTTACTGAAA
GTCTGACCTGAGAGGGCACTCATGTGTTCTGTCGGTACCTGACGTACACG
CCCACAATTGGGTTATTGACCATAAATAGCTATCACTGCCATGATTGGTG
CTACCTGACGTACAATGCAACAATTGGGTTATCGACGACGAATAGCTATC
ACTGCCATGGGTGGTACTATTCTGACCTAACTCCTTGCCTGCCTGCTACT
ACCTCACCCTACACAACTTCCCTGACCCCAGTTCTGCCACCCAGTACCAG
CGCTGGTTTTCATGGGCATGTGGGTCGAGTATTGGCTCGGCA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig123:1199327..1200468+

>mRNA_H-akashiwo_Contig123.13.1 ID=mRNA_H-akashiwo_Contig123.13.1|Name=mRNA_H-akashiwo_Contig123.13.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=528bp|location=Sequence derived from alignment at H-akashiwo_Contig123:1199327..1200468+ (Heterosigma akashiwo CCMP452)
TCGATTCAATTTCTTCAAGGCAGTCGACCGCTCTGTGTCTTCTGCAGCTC
TTGCGAAGCACCTTGCGTTGCCATCATGGACGAGGGGCGCGATCCAGTTG
TTTCTGGCGACGTAGAGGCAGGAGAGGGGACCCCTCTCCTACCCGGGAGG
CAAGAAACGAAAGGCGAGGAAGGCACCGATTCCCGGAGCCCTTCTCGCTC
GTCGAAACGCTCTTCTTCTGTTCGCTCTTCTCTTTACTCTGACGGCGGAA
CATCTGAAGGTACAGGCACCAATAGCACGCGTAAAAACAAGCATATTCGC
AATTTTGACAAGCTGAGGGCCATGCTTCACAAGCAGTTGCTCGAAGACGA
TGAGCTGTTCCCTTCAACCGGGCTAAAATCCTCGGAGGCCAAGGAGCGCT
TGAAAATGTATGGAGAGAACACGCTTGAAAAGAAACAATTAAATTTTGTA
ATCAGATTCCTTCTGCAGTTCTGCCACCCAGTACCAGCGCTGGTTTTCAT
GGGCATGTGGGTCGAGTATTGGCTCGGC
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