mRNA_H-akashiwo_Contig1229.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1229.5.1
Unique NamemRNA_H-akashiwo_Contig1229.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1229.5.1 vs. uniprot
Match: A0A7S2UZV4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZV4_9STRA)

HSP 1 Score: 208 bits (529), Expect = 3.800e-65
Identity = 97/161 (60.25%), Postives = 123/161 (76.40%), Query Frame = 1
Query:   37 ELKSDMGMDYVPLENMLMAADWEGADQFTRDALIKIAGPTAVKTGFVYFTQVKNIPTTDLHTIERLWKKHSDGKFGYSEQRKIWDKQGGDFDKFCEKIGWKIQDGDNLRLRKWFGKSEFIYDLNEAPKGHFPLTSALRGVTLLKELLTHPAWDDEEFAARK 519
            +L S  G+DY+PL  MLM  D+E ADQFTRD LI IAG  A + GFVY+TQVK++P  D+ T+ERLW K+S+GKFGY+ QRK++    G+F+ FC K+ W + D    R R+WFGKSEFIYDL +AP+GH PLTSALRG TLLKEL+ +PAWD+EEF A+K
Sbjct:   66 DLPSSCGVDYIPLATMLMTGDFEAADQFTRDNLIFIAGEKAQERGFVYWTQVKDLPPVDMATMERLWLKYSNGKFGYTMQRKLYRLGKGNFEAFCRKVDWNVVDEGVERKRRWFGKSEFIYDLEKAPRGHLPLTSALRGTTLLKELMNYPAWDNEEFQAKK 226          
BLAST of mRNA_H-akashiwo_Contig1229.5.1 vs. uniprot
Match: B8C9C4_THAPS (GUN4 domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C9C4_THAPS)

HSP 1 Score: 202 bits (513), Expect = 8.820e-64
Identity = 96/151 (63.58%), Postives = 112/151 (74.17%), Query Frame = 1
Query:   40 LKSDMGMDYVPLENMLMAADWEGADQFTRDALIKIAGPTAVKTGFVYFTQVKNIPTTDLHTIERLWKKHSDGKFGYSEQRKIWDKQGGDFDKFCEKIGWKIQDGDNLRLRKWFGKSEFIYDLNEAPKGHFPLTSALRGVTLLKELLTHPAW 492
            L SD+GMDYVPL  ML       ADQFTRDALI +AG  A    FVYFT+VKNIP+TDL TIERLW K S GKFGYS Q++IW K  GDF+ +C KIGW  +DG+  R ++WFG SEF YD+ +APKGH PLTSALRG +L+KELL HP W
Sbjct:    1 LPSDVGMDYVPLATMLATGQLAEADQFTRDALIVLAGSKAKGRDFVYFTEVKNIPSTDLATIERLWTKFSGGKFGYSVQKQIWKKSKGDFEVWCNKIGWTTKDGEIERKKRWFGASEFTYDVKKAPKGHLPLTSALRGTSLIKELLNHPVW 151          
BLAST of mRNA_H-akashiwo_Contig1229.5.1 vs. uniprot
Match: A0A1Z5KQ11_FISSO (GUN4 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KQ11_FISSO)

HSP 1 Score: 204 bits (518), Expect = 1.770e-63
Identity = 96/156 (61.54%), Postives = 115/156 (73.72%), Query Frame = 1
Query:   40 LKSDMGMDYVPLENMLMAADWEGADQFTRDALIKIAGPTAVKTGFVYFTQVKNIPTTDLHTIERLWKKHSDGKFGYSEQRKIWDKQGGDFDKFCEKIGWKIQDGDNLRLRKWFGKSEFIYDLNEAPKGHFPLTSALRGVTLLKELLTHPAWDDEEF 507
            L S  GMDYVPL  ML   D   ADQFTRDALI+I+G  A    FVYFT VKNIP+TDL T+ERLW K S GKFGYS Q+K W++  GDF+ FC KIGW   DG+  R ++WFG SEFIYD+ +AP+GH PLTSALRG +L+K LL HP WD+E++
Sbjct:   68 LPSACGMDYVPLATMLATGDLVAADQFTRDALIEISGAKAKGRNFVYFTDVKNIPSTDLATMERLWNKFSKGKFGYSVQKKKWNQSKGDFEVFCRKIGWTTTDGEVERKKRWFGASEFIYDVKKAPEGHLPLTSALRGTSLIKSLLKHPVWDNEDW 223          
BLAST of mRNA_H-akashiwo_Contig1229.5.1 vs. uniprot
Match: A0A7S2UF66_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UF66_9STRA)

HSP 1 Score: 204 bits (518), Expect = 2.070e-63
Identity = 95/156 (60.90%), Postives = 115/156 (73.72%), Query Frame = 1
Query:   40 LKSDMGMDYVPLENMLMAADWEGADQFTRDALIKIAGPTAVKTGFVYFTQVKNIPTTDLHTIERLWKKHSDGKFGYSEQRKIWDKQGGDFDKFCEKIGWKIQDGDNLRLRKWFGKSEFIYDLNEAPKGHFPLTSALRGVTLLKELLTHPAWDDEEF 507
            L SD+GMDYVPL  ML       ADQFTRDALI IAG       FVYFT+VKN+P TDL T+ERLW K S GKFGYS Q+K W +  GDF+ FC KIGW  +DGD  R ++WFG SEFIYD+ +AP+GH PLTSALRG +LLK++L HP WD++++
Sbjct:   73 LPSDVGMDYVPLATMLATGQLAEADQFTRDALIVIAGSKEKGRDFVYFTEVKNMPATDLATMERLWNKFSKGKFGYSVQKKKWKQSKGDFEAFCSKIGWTTKDGDVERKKRWFGASEFIYDVKKAPEGHLPLTSALRGTSLLKQMLNHPVWDNDDW 228          
BLAST of mRNA_H-akashiwo_Contig1229.5.1 vs. uniprot
Match: A0A4D9CXN1_9STRA (GUN4 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CXN1_9STRA)

HSP 1 Score: 204 bits (518), Expect = 2.920e-63
Identity = 100/163 (61.35%), Postives = 121/163 (74.23%), Query Frame = 1
Query:   19 PTEKGIELKSDMGMDYVPLENMLMAADWEGADQFTRDALIKIAGPTAVKTGFVYFTQVKNIPTTDLHTIERLWKKHSDGKFGYSEQRKIWDKQ--GGDFDKFCEKIGWKIQDGDNLRLRKWFGKSEFIYDLNEAPKGHFPLTSALRGVTLLKELLTHPAWDDE 501
            PT +   LKS+ GMDYVPL NML+  D++GADQFTRDALI+IAG  A K G+VYFT+VK +P  D+ TIE+LW K+S GKFGY+ QR IW++   G DF++FC KIGW   +    R  KWFGKSEFIYDL +AP GH PLTSALRG +LLK LLT+P W  E
Sbjct:   73 PTMEKDVLKSECGMDYVPLANMLLIGDFKGADQFTRDALIQIAGENARKRGYVYFTEVKGLPEADMATIEKLWLKYSKGKFGYTVQRAIWNQVTVGKDFERFCRKIGWNTVENGIERKLKWFGKSEFIYDLEKAPVGHLPLTSALRGTSLLKNLLTYPLWATE 235          
BLAST of mRNA_H-akashiwo_Contig1229.5.1 vs. uniprot
Match: A0A7S2R3S6_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R3S6_9STRA)

HSP 1 Score: 203 bits (516), Expect = 5.340e-63
Identity = 95/156 (60.90%), Postives = 116/156 (74.36%), Query Frame = 1
Query:   40 LKSDMGMDYVPLENMLMAADWEGADQFTRDALIKIAGPTAVKTGFVYFTQVKNIPTTDLHTIERLWKKHSDGKFGYSEQRKIWDKQGGDFDKFCEKIGWKIQDGDNLRLRKWFGKSEFIYDLNEAPKGHFPLTSALRGVTLLKELLTHPAWDDEEF 507
            L SDMGMDYVPL  ML       ADQFTRDALIK+ G T     FVY+T+VK IP+TDL TIERLW K S GKFGYS Q+K W +   DF+ FC KIGW  +DGD  R ++WFG SEFIYD+ +AP+GH PLTSALRG +L+K+LLTHP W+++++
Sbjct:   81 LPSDMGMDYVPLATMLATGQLAEADQFTRDALIKLCGATEKGRNFVYWTEVKLIPSTDLATIERLWNKFSGGKFGYSVQKKKWRQSKNDFEVFCRKIGWTTKDGDVERKKRWFGASEFIYDVKKAPEGHLPLTSALRGTSLIKQLLTHPVWENDDW 236          
BLAST of mRNA_H-akashiwo_Contig1229.5.1 vs. uniprot
Match: A0A6U3XS79_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3XS79_9STRA)

HSP 1 Score: 202 bits (513), Expect = 1.220e-62
Identity = 94/156 (60.26%), Postives = 115/156 (73.72%), Query Frame = 1
Query:   40 LKSDMGMDYVPLENMLMAADWEGADQFTRDALIKIAGPTAVKTGFVYFTQVKNIPTTDLHTIERLWKKHSDGKFGYSEQRKIWDKQGGDFDKFCEKIGWKIQDGDNLRLRKWFGKSEFIYDLNEAPKGHFPLTSALRGVTLLKELLTHPAWDDEEF 507
            L SD+GMDYVPL  ML    W  ADQFTRDALI +AG       FVY+T+VK IP+TDL TIERLW K S GKFGYS Q+K W +   DF+ +C+KIGW   DGD  R ++WFG SEFIYDL +AP+GH PLTSALRG +L+KELL HP W+++++
Sbjct:   74 LPSDVGMDYVPLATMLATGQWAEADQFTRDALIVLAGSKEKGRTFVYWTEVKRIPSTDLATIERLWNKFSKGKFGYSVQKKKWRQSKNDFEAWCKKIGWTTTDGDVERKKRWFGASEFIYDLKKAPEGHLPLTSALRGTSLIKELLNHPVWENDDW 229          
BLAST of mRNA_H-akashiwo_Contig1229.5.1 vs. uniprot
Match: A0A7S2MK00_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MK00_9STRA)

HSP 1 Score: 201 bits (512), Expect = 1.740e-62
Identity = 94/156 (60.26%), Postives = 116/156 (74.36%), Query Frame = 1
Query:   40 LKSDMGMDYVPLENMLMAADWEGADQFTRDALIKIAGPTAVKTGFVYFTQVKNIPTTDLHTIERLWKKHSDGKFGYSEQRKIWDKQGGDFDKFCEKIGWKIQDGDNLRLRKWFGKSEFIYDLNEAPKGHFPLTSALRGVTLLKELLTHPAWDDEEF 507
            L SD+GMDYVPL  ML       ADQFTRDALI +AG       FVYFT+VKNIP+TDL TIERLW K S GKFGYS Q++ W +  GDFD FC KIGW  +DG+  R ++WFG SEFIYD+ +AP+GH PLTSALRG +L +ELL+HP W+++++
Sbjct:   72 LPSDVGMDYVPLATMLATGQLAEADQFTRDALIVLAGSKEKGRDFVYFTEVKNIPSTDLATIERLWNKFSGGKFGYSVQKRKWKQSKGDFDLFCRKIGWLTKDGEVERKKRWFGASEFIYDVKKAPEGHLPLTSALRGTSLCRELLSHPVWENDDW 227          
BLAST of mRNA_H-akashiwo_Contig1229.5.1 vs. uniprot
Match: A0A6S8ZHG1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8ZHG1_9STRA)

HSP 1 Score: 199 bits (507), Expect = 1.060e-61
Identity = 94/156 (60.26%), Postives = 116/156 (74.36%), Query Frame = 1
Query:   40 LKSDMGMDYVPLENMLMAADWEGADQFTRDALIKIAGPTAVKTGFVYFTQVKNIPTTDLHTIERLWKKHSDGKFGYSEQRKIWDKQGGDFDKFCEKIGWKIQDGDNLRLRKWFGKSEFIYDLNEAPKGHFPLTSALRGVTLLKELLTHPAWDDEEF 507
            L SD+GMDYVPL  ML       ADQFTRDALI +AG  A    FVYFT+VKNIP+TDL TIERLW K S GKFGYS Q++ + +   DF+ FC KIGW  +DG+  R ++WFG SEFIYD+ +AP+GH PLTSALRG +L+KELL HP WD++++
Sbjct:   74 LPSDVGMDYVPLATMLATGQLAEADQFTRDALIVLAGSKAKGRDFVYFTEVKNIPSTDLATIERLWSKFSKGKFGYSVQKRKYRQAKNDFEAFCRKIGWTTKDGEVERKKRWFGASEFIYDVKKAPEGHLPLTSALRGTSLIKELLNHPVWDNDDW 229          
BLAST of mRNA_H-akashiwo_Contig1229.5.1 vs. uniprot
Match: A0A836C7C7_9STRA (GUN4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7C7_9STRA)

HSP 1 Score: 199 bits (506), Expect = 1.100e-61
Identity = 93/154 (60.39%), Postives = 111/154 (72.08%), Query Frame = 1
Query:   40 LKSDMGMDYVPLENMLMAADWEGADQFTRDALIKIAGPTAVKTGFVYFTQVKNIPTTDLHTIERLWKKHSDGKFGYSEQRKIWDKQGGDFDKFCEKIGWKIQDGDNLRLRKWFGKSEFIYDLNEAPKGHFPLTSALRGVTLLKELLTHPAWDDE 501
            L SD G+DYVPL  ML   D++GADQFTRDALI+ AG  + K GFVY+T VKNIP  DL TIE+LW K+S GKFGYS Q ++W ++ GDF+ FC  IGW  +  +  R  +WFG +EFIYD   APKGH PLTSALRG  LLKELL HP W+ E
Sbjct:   68 LSSDAGIDYVPLATMLATGDFKGADQFTRDALIRAAGEGSQKRGFVYWTDVKNIPNKDLATIEKLWLKYSGGKFGYSVQAEVWKRKKGDFENFCRTIGWNTKSEEIERKLRWFGANEFIYDAERAPKGHLPLTSALRGTQLLKELLNHPVWETE 221          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1229.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2UZV4_9STRA3.800e-6560.25Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
B8C9C4_THAPS8.820e-6463.58GUN4 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A1Z5KQ11_FISSO1.770e-6361.54GUN4 domain-containing protein n=2 Tax=Fistulifera... [more]
A0A7S2UF66_9STRA2.070e-6360.90Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A4D9CXN1_9STRA2.920e-6361.35GUN4 domain-containing protein n=2 Tax=Monodopsida... [more]
A0A7S2R3S6_9STRA5.340e-6360.90Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A6U3XS79_9STRA1.220e-6260.26Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2MK00_9STRA1.740e-6260.26Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A6S8ZHG1_9STRA1.060e-6160.26Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A836C7C7_9STRA1.100e-6160.39GUN4 domain-containing protein n=1 Tax=Tribonema m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1229contigH-akashiwo_Contig1229:229044..229571 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog35128.Thaps263658
PFAMsGUN4
Model size528
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.45e-64
EggNOG OGs28PU6@1|root,2QWGS@2759|Eukaryota,2XCTR@2836|Bacillariophyta
DescriptionGUN4-like
Cds size528
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387126.8375945-CDS-H-akashiwo_Contig1229:229043..2295711681387126.8375945-CDS-H-akashiwo_Contig1229:229043..229571Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1229 229044..229571 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1229.5.1prot_H-akashiwo_Contig1229.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1229 229044..229571 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1229.5.1

>prot_H-akashiwo_Contig1229.5.1 ID=prot_H-akashiwo_Contig1229.5.1|Name=mRNA_H-akashiwo_Contig1229.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=176bp
MSTTEEPTEKGIELKSDMGMDYVPLENMLMAADWEGADQFTRDALIKIAG
PTAVKTGFVYFTQVKNIPTTDLHTIERLWKKHSDGKFGYSEQRKIWDKQG
GDFDKFCEKIGWKIQDGDNLRLRKWFGKSEFIYDLNEAPKGHFPLTSALR
GVTLLKELLTHPAWDDEEFAARKRR*
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mRNA from alignment at H-akashiwo_Contig1229:229044..229571-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1229.5.1 ID=mRNA_H-akashiwo_Contig1229.5.1|Name=mRNA_H-akashiwo_Contig1229.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=528bp|location=Sequence derived from alignment at H-akashiwo_Contig1229:229044..229571- (Heterosigma akashiwo CCMP452)
ATGTCGACAACCGAGGAGCCTACTGAAAAAGGGATTGAATTGAAGTCCGA CATGGGGATGGATTACGTGCCTTTGGAGAACATGCTGATGGCTGCAGATT GGGAAGGTGCAGATCAATTTACCCGTGATGCTTTGATTAAGATCGCCGGT CCCACCGCCGTGAAGACCGGATTCGTGTACTTTACCCAGGTAAAGAACAT CCCTACCACAGACCTTCACACAATTGAGCGGTTGTGGAAGAAGCACAGCG ATGGAAAGTTTGGGTATTCCGAGCAAAGAAAAATCTGGGACAAGCAGGGG GGCGATTTTGATAAATTCTGCGAAAAGATTGGATGGAAGATCCAGGATGG CGACAACCTCAGGTTGCGGAAGTGGTTCGGTAAGAGCGAATTCATCTATG ACCTCAATGAAGCTCCCAAGGGCCACTTTCCTTTGACCAGCGCGCTGCGG GGAGTTACGCTTCTGAAGGAGCTTCTGACCCACCCTGCGTGGGATGATGA AGAGTTTGCTGCCCGGAAGAGGAGATGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1229:229044..229571-

>mRNA_H-akashiwo_Contig1229.5.1 ID=mRNA_H-akashiwo_Contig1229.5.1|Name=mRNA_H-akashiwo_Contig1229.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=528bp|location=Sequence derived from alignment at H-akashiwo_Contig1229:229044..229571- (Heterosigma akashiwo CCMP452)
ATGTCGACAACCGAGGAGCCTACTGAAAAAGGGATTGAATTGAAGTCCGA
CATGGGGATGGATTACGTGCCTTTGGAGAACATGCTGATGGCTGCAGATT
GGGAAGGTGCAGATCAATTTACCCGTGATGCTTTGATTAAGATCGCCGGT
CCCACCGCCGTGAAGACCGGATTCGTGTACTTTACCCAGGTAAAGAACAT
CCCTACCACAGACCTTCACACAATTGAGCGGTTGTGGAAGAAGCACAGCG
ATGGAAAGTTTGGGTATTCCGAGCAAAGAAAAATCTGGGACAAGCAGGGG
GGCGATTTTGATAAATTCTGCGAAAAGATTGGATGGAAGATCCAGGATGG
CGACAACCTCAGGTTGCGGAAGTGGTTCGGTAAGAGCGAATTCATCTATG
ACCTCAATGAAGCTCCCAAGGGCCACTTTCCTTTGACCAGCGCGCTGCGG
GGAGTTACGCTTCTGAAGGAGCTTCTGACCCACCCTGCGTGGGATGATGA
AGAGTTTGCTGCCCGGAAGAGGAGATGA
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