mRNA_H-akashiwo_Contig1227.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1227.4.1
Unique NamemRNA_H-akashiwo_Contig1227.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1227.4.1 vs. uniprot
Match: A0A7S4D6C5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6C5_HETAK)

HSP 1 Score: 75.5 bits (184), Expect = 4.150e-16
Identity = 35/48 (72.92%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:    1 ERVDRIKTLDPEHTVKGVQSFLGIINYYKGFVPKVSVIAEPLTRLTQK 144
            +RVD+I T + + TVKG+QSFLGIINYYKGFVP++S IAEPLTRLT+K
Sbjct:   90 KRVDQITTKEVDRTVKGIQSFLGIINYYKGFVPRLSEIAEPLTRLTRK 137
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BLAST of mRNA_H-akashiwo_Contig1227.4.1 vs. uniprot
Match: A0A5S6QTD8_TRIMR (Reverse transcriptase domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QTD8_TRIMR)

HSP 1 Score: 52.4 bits (124), Expect = 1.340e-6
Identity = 22/47 (46.81%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    4 RVDRIKTLDPEHTVKGVQSFLGIINYYKGFVPKVSVIAEPLTRLTQK 144
            +VD +  + P   V  ++SFLG + +Y  F+P +SV+AEPLTRLT+K
Sbjct:   75 KVDAVMKMPPPSNVSRLRSFLGSVQFYSKFIPNLSVLAEPLTRLTRK 121
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BLAST of mRNA_H-akashiwo_Contig1227.4.1 vs. uniprot
Match: A0A5S6Q499_TRIMR (Reverse transcriptase domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6Q499_TRIMR)

HSP 1 Score: 52.4 bits (124), Expect = 1.430e-6
Identity = 22/47 (46.81%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    4 RVDRIKTLDPEHTVKGVQSFLGIINYYKGFVPKVSVIAEPLTRLTQK 144
            +VD +  + P   V  ++SFLG + +Y  F+P +SV+AEPLTRLT+K
Sbjct:  410 KVDAVMKMPPPSNVSRLRSFLGSVQFYSKFIPNLSVLAEPLTRLTRK 456
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BLAST of mRNA_H-akashiwo_Contig1227.4.1 vs. uniprot
Match: A0A5S6QL51_TRIMR (Reverse transcriptase domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QL51_TRIMR)

HSP 1 Score: 52.4 bits (124), Expect = 1.430e-6
Identity = 22/47 (46.81%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    4 RVDRIKTLDPEHTVKGVQSFLGIINYYKGFVPKVSVIAEPLTRLTQK 144
            +VD +  + P   V  ++SFLG + +Y  F+P +SV+AEPLTRLT+K
Sbjct:  654 KVDAVMKMPPPSNVSRLRSFLGSVQFYSKFIPNLSVLAEPLTRLTRK 700
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BLAST of mRNA_H-akashiwo_Contig1227.4.1 vs. uniprot
Match: A0A5S6QF84_TRIMR (Uncharacterized protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QF84_TRIMR)

HSP 1 Score: 52.4 bits (124), Expect = 1.430e-6
Identity = 22/47 (46.81%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    4 RVDRIKTLDPEHTVKGVQSFLGIINYYKGFVPKVSVIAEPLTRLTQK 144
            +VD +  + P   V  ++SFLG + +Y  F+P +SV+AEPLTRLT+K
Sbjct:  350 KVDAVMKMPPPSNVSRLRSFLGSVQFYSKFIPNLSVLAEPLTRLTRK 396
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BLAST of mRNA_H-akashiwo_Contig1227.4.1 vs. uniprot
Match: A0A388L6L4_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L6L4_CHABU)

HSP 1 Score: 50.8 bits (120), Expect = 5.010e-6
Identity = 23/47 (48.94%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    4 RVDRIKTLDPEHTVKGVQSFLGIINYYKGFVPKVSVIAEPLTRLTQK 144
            +V+ I+       V+G++SFLG+ +YY+ FVPK SVIA PL+R+T K
Sbjct:  756 KVEVIQNWPQPANVRGLRSFLGLASYYRKFVPKFSVIAHPLSRITSK 802
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BLAST of mRNA_H-akashiwo_Contig1227.4.1 vs. uniprot
Match: A0A5S6QVE0_TRIMR (Uncharacterized protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QVE0_TRIMR)

HSP 1 Score: 50.8 bits (120), Expect = 5.010e-6
Identity = 21/47 (44.68%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    4 RVDRIKTLDPEHTVKGVQSFLGIINYYKGFVPKVSVIAEPLTRLTQK 144
            +VD +  + P   V  ++SFLG + +Y  F+P +S +AEPLTRLT+K
Sbjct:  710 KVDAVMKMPPPSNVSRLRSFLGSVQFYSKFIPNLSALAEPLTRLTRK 756
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BLAST of mRNA_H-akashiwo_Contig1227.4.1 vs. uniprot
Match: C5KSH3_PERM5 (Retrovirus polyprotein, putative n=3 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KSH3_PERM5)

HSP 1 Score: 50.4 bits (119), Expect = 6.860e-6
Identity = 21/44 (47.73%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    4 RVDRIKTLDPEHTVKGVQSFLGIINYYKGFVPKVSVIAEPLTRL 135
            RV  I    P  TV  V+SFLG++NYY+ F+P++S +A+P+ RL
Sbjct:  573 RVQAIAEWTPPRTVSEVRSFLGLVNYYRTFIPRMSAVAKPIQRL 616
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BLAST of mRNA_H-akashiwo_Contig1227.4.1 vs. uniprot
Match: UPI00148A5B0D (uncharacterized protein LOC105349201 isoform X1 n=3 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A5B0D)

HSP 1 Score: 50.1 bits (118), Expect = 9.380e-6
Identity = 23/48 (47.92%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:    1 ERVDRIKTLDPEHTVKGVQSFLGIINYYKGFVPKVSVIAEPLTRLTQK 144
            E+V  I+   P  T K V+SFLG++ +Y+ F+P  S IA PLT LT+K
Sbjct:  726 EKVAAIQEFSPPTTKKQVRSFLGLVGFYRRFIPNFSAIAAPLTDLTRK 773
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BLAST of mRNA_H-akashiwo_Contig1227.4.1 vs. uniprot
Match: UPI001455108C (uncharacterized protein K02A2.6-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455108C)

HSP 1 Score: 50.1 bits (118), Expect = 9.380e-6
Identity = 22/48 (45.83%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:    1 ERVDRIKTLDPEHTVKGVQSFLGIINYYKGFVPKVSVIAEPLTRLTQK 144
            ++VD+I       T K V+SF+G++NYY+ F+P  S IA P+T LT+K
Sbjct:  802 DKVDKILHATKPSTKKEVRSFMGLVNYYRKFIPNFSAIAVPITDLTKK 849
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1227.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4D6C5_HETAK4.150e-1672.92Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A5S6QTD8_TRIMR1.340e-646.81Reverse transcriptase domain-containing protein n=... [more]
A0A5S6Q499_TRIMR1.430e-646.81Reverse transcriptase domain-containing protein n=... [more]
A0A5S6QL51_TRIMR1.430e-646.81Reverse transcriptase domain-containing protein n=... [more]
A0A5S6QF84_TRIMR1.430e-646.81Uncharacterized protein n=1 Tax=Trichuris muris Ta... [more]
A0A388L6L4_CHABU5.010e-648.94Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A5S6QVE0_TRIMR5.010e-644.68Uncharacterized protein n=1 Tax=Trichuris muris Ta... [more]
C5KSH3_PERM56.860e-647.73Retrovirus polyprotein, putative n=3 Tax=Perkinsus... [more]
UPI00148A5B0D9.380e-647.92uncharacterized protein LOC105349201 isoform X1 n=... [more]
UPI001455108C9.380e-645.83uncharacterized protein K02A2.6-like n=1 Tax=Aster... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1227contigH-akashiwo_Contig1227:208482..208625 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog5180.EDN94553
PFAMsChromo,Peptidase_A2E,RVT_1,rve,zf-CCHC
Model size144
Max annot lvl4751|Fungi
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0003964,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006278,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071897,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576
Exons1
Evalue1.54e-06
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3NVKU@4751|Fungi,3QP1S@4890|Ascomycota,20Z20@147548|Leotiomycetes
DescriptionChromatin organization modifier domain
Cds size144
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387126.3018508-CDS-H-akashiwo_Contig1227:208481..2086251681387126.3018508-CDS-H-akashiwo_Contig1227:208481..208625Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1227 208482..208625 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1227.4.1prot_H-akashiwo_Contig1227.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1227 208482..208625 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1227.4.1

>prot_H-akashiwo_Contig1227.4.1 ID=prot_H-akashiwo_Contig1227.4.1|Name=mRNA_H-akashiwo_Contig1227.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=48bp
ERVDRIKTLDPEHTVKGVQSFLGIINYYKGFVPKVSVIAEPLTRLTQK
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mRNA from alignment at H-akashiwo_Contig1227:208482..208625-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1227.4.1 ID=mRNA_H-akashiwo_Contig1227.4.1|Name=mRNA_H-akashiwo_Contig1227.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=144bp|location=Sequence derived from alignment at H-akashiwo_Contig1227:208482..208625- (Heterosigma akashiwo CCMP452)
GAGCGGGTAGACCGGATCAAAACGCTGGACCCAGAGCACACGGTGAAAGG
TGTCCAGTCGTTTTTGGGCATCATTAACTATTACAAGGGGTTTGTGCCCA
AAGTGTCCGTTATTGCGGAACCTCTCACGCGCCTTACCCAAAAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1227:208482..208625-

>mRNA_H-akashiwo_Contig1227.4.1 ID=mRNA_H-akashiwo_Contig1227.4.1|Name=mRNA_H-akashiwo_Contig1227.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=144bp|location=Sequence derived from alignment at H-akashiwo_Contig1227:208482..208625- (Heterosigma akashiwo CCMP452)
GAGCGGGTAGACCGGATCAAAACGCTGGACCCAGAGCACACGGTGAAAGG
TGTCCAGTCGTTTTTGGGCATCATTAACTATTACAAGGGGTTTGTGCCCA
AAGTGTCCGTTATTGCGGAACCTCTCACGCGCCTTACCCAAAAG
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