mRNA_H-akashiwo_Contig1222.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1222.7.1
Unique NamemRNA_H-akashiwo_Contig1222.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1222.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1222contigH-akashiwo_Contig1222:228845..229332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog67593.Physo128912
PFAMsPex16
Model size488
Max annot lvl4776|Peronosporales
KEGG koko:K13335
KEGG TC3.A.20.1,9.A.17.1
KEGG Pathwayko04146,map04146
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.03e-06
EggNOG OGsKOG4546@1|root,KOG4546@2759|Eukaryota,3QC8P@4776|Peronosporales
DescriptionPeroxisomal membrane protein (Pex16)
Cds size486
COG categoryU
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387125.5544443-CDS-H-akashiwo_Contig1222:228844..2293301681387125.5544443-CDS-H-akashiwo_Contig1222:228844..229330Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1222 228845..229330 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1222.7.1prot_H-akashiwo_Contig1222.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1222 228845..229330 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1222.7.1

>prot_H-akashiwo_Contig1222.7.1 ID=prot_H-akashiwo_Contig1222.7.1|Name=mRNA_H-akashiwo_Contig1222.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=162bp
YEAGYAGSRILNYVNETILLERGSQELISIEEKTWDHRFCEQLGGLLALV
SVLEVIAEKGAETYGGYRAKWRVIQTIERIKAITRLVILFYRASMLIDGG
KLFPGQQYLPDPDLQQANGNRLGGSVGRGPYYLRTPAQQHSRTPHHRHLE
TTDEPARAASVR
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mRNA from alignment at H-akashiwo_Contig1222:228845..229332+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1222.7.1 ID=mRNA_H-akashiwo_Contig1222.7.1|Name=mRNA_H-akashiwo_Contig1222.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=488bp|location=Sequence derived from alignment at H-akashiwo_Contig1222:228845..229332+ (Heterosigma akashiwo CCMP452)
TACGAAGCTGGGTACGCAGGCTCGCGAATTCTTAATTATGTGAATGAAAC
CATTCTACTTGAGAGAGGCTCGCAGGAGTTGATATCTATCGAGGAAAAAA
CATGGGATCATCGGTTTTGTGAGCAGCTTGGTGGGCTATTGGCACTAGTA
TCAGTTCTTGAGGTAATTGCCGAAAAAGGCGCCGAGACCTACGGCGGATA
CCGAGCGAAGTGGAGAGTCATCCAGACAATTGAAAGAATCAAAGCCATTA
CCAGGCTTGTGATACTCTTTTACAGGGCATCCATGCTTATTGATGGGGGG
AAATTGTTTCCAGGTCAGCAGTACCTGCCTGATCCTGATCTGCAACAGGC
TAATGGGAATCGCCTTGGCGGCAGCGTCGGAAGGGGGCCCTACTACCTCA
GAACACCAGCGCAGCAACACAGCCGAACACCTCATCACCGCCATTTGGAA
ACAACAGACGAGCCAGCAAGAGCGGCATCCGTTCGGCT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1222:228845..229332+

>mRNA_H-akashiwo_Contig1222.7.1 ID=mRNA_H-akashiwo_Contig1222.7.1|Name=mRNA_H-akashiwo_Contig1222.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=486bp|location=Sequence derived from alignment at H-akashiwo_Contig1222:228845..229332+ (Heterosigma akashiwo CCMP452)
TACGAAGCTGGGTACGCAGGCTCGCGAATTCTTAATTATGTGAATGAAAC
CATTCTACTTGAGAGAGGCTCGCAGGAGTTGATATCTATCGAGGAAAAAA
CATGGGATCATCGGTTTTGTGAGCAGCTTGGTGGGCTATTGGCACTAGTA
TCAGTTCTTGAGGTAATTGCCGAAAAAGGCGCCGAGACCTACGGCGGATA
CCGAGCGAAGTGGAGAGTCATCCAGACAATTGAAAGAATCAAAGCCATTA
CCAGGCTTGTGATACTCTTTTACAGGGCATCCATGCTTATTGATGGGGGG
AAATTGTTTCCAGGTCAGCAGTACCTGCCTGATCCTGATCTGCAACAGGC
TAATGGGAATCGCCTTGGCGGCAGCGTCGGAAGGGGGCCCTACTACCTCA
GAACACCAGCGCAGCAACACAGCCGAACACCTCATCACCGCCATTTGGAA
ACAACAGACGAGCCAGCAAGAGCGGCATCCGTTCGG
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