mRNA_H-akashiwo_Contig122.16.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig122.16.1
Unique NamemRNA_H-akashiwo_Contig122.16.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig122.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig122contigH-akashiwo_Contig122:1259226..1259789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size565
Hectar predicted targeting categoryother localisation
Exons1
Cds size528
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387124.7644112-CDS-H-akashiwo_Contig122:1259225..12597531681387124.7644112-CDS-H-akashiwo_Contig122:1259225..1259753Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig122 1259226..1259753 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387124.774598-UTR-H-akashiwo_Contig122:1259753..12597891681387124.774598-UTR-H-akashiwo_Contig122:1259753..1259789Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig122 1259754..1259789 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig122.16.1prot_H-akashiwo_Contig122.16.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig122 1259226..1259753 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig122.16.1

>prot_H-akashiwo_Contig122.16.1 ID=prot_H-akashiwo_Contig122.16.1|Name=mRNA_H-akashiwo_Contig122.16.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=176bp
LSPALLSSWQAGTRTLPEPSPHFLPVACWTAAKLCFRSSWFTFSVRHHGF
VPVVCSSCRPSLVLGCDAAAQISSDHEKLRRAHCCLTCLQLISVNSKRLD
TQKAGGAERPLQLLLLVSHSHHYSSSFIVSLLLLTKCADQVWPLATTGGR
WWDARIIRIVHSVTTNHIFFLVVIK*
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mRNA from alignment at H-akashiwo_Contig122:1259226..1259789+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig122.16.1 ID=mRNA_H-akashiwo_Contig122.16.1|Name=mRNA_H-akashiwo_Contig122.16.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=564bp|location=Sequence derived from alignment at H-akashiwo_Contig122:1259226..1259789+ (Heterosigma akashiwo CCMP452)
TTGAGCCCCGCGCTCCTCTCCTCGTGGCAGGCTGGGACGCGTACATTGCC
AGAACCCAGTCCGCATTTTTTACCAGTAGCCTGTTGGACAGCTGCAAAGC
TTTGCTTTAGAAGTTCATGGTTTACGTTCTCAGTTCGCCACCACGGATTT
GTTCCTGTTGTATGTAGTTCATGTCGCCCGTCACTTGTGCTTGGATGTGA
TGCTGCTGCTCAGATCAGCAGTGATCATGAGAAATTAAGGAGGGCACACT
GTTGTCTTACTTGTCTTCAGCTGATTTCTGTGAACAGCAAGCGGCTGGAT
ACACAGAAAGCGGGAGGAGCGGAGCGACCGTTGCAACTGCTGCTGCTAGT
TTCCCACTCACATCACTACTCATCTTCATTTATAGTTAGTTTATTGTTGC
TGACCAAGTGTGCTGACCAAGTCTGGCCTTTGGCTACGACTGGTGGGCGG
TGGTGGGATGCCAGAATAATCAGAATTGTCCACAGTGTTACCACCAACCA
CATCTTCTTCCTAGTAGTAATAAAGTAATGATTCGTTGAATGTCTTACTT
TTTCATATGTGTCG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig122:1259226..1259789+

>mRNA_H-akashiwo_Contig122.16.1 ID=mRNA_H-akashiwo_Contig122.16.1|Name=mRNA_H-akashiwo_Contig122.16.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=528bp|location=Sequence derived from alignment at H-akashiwo_Contig122:1259226..1259789+ (Heterosigma akashiwo CCMP452)
TTGAGCCCCGCGCTCCTCTCCTCGTGGCAGGCTGGGACGCGTACATTGCC
AGAACCCAGTCCGCATTTTTTACCAGTAGCCTGTTGGACAGCTGCAAAGC
TTTGCTTTAGAAGTTCATGGTTTACGTTCTCAGTTCGCCACCACGGATTT
GTTCCTGTTGTATGTAGTTCATGTCGCCCGTCACTTGTGCTTGGATGTGA
TGCTGCTGCTCAGATCAGCAGTGATCATGAGAAATTAAGGAGGGCACACT
GTTGTCTTACTTGTCTTCAGCTGATTTCTGTGAACAGCAAGCGGCTGGAT
ACACAGAAAGCGGGAGGAGCGGAGCGACCGTTGCAACTGCTGCTGCTAGT
TTCCCACTCACATCACTACTCATCTTCATTTATAGTTAGTTTATTGTTGC
TGACCAAGTGTGCTGACCAAGTCTGGCCTTTGGCTACGACTGGTGGGCGG
TGGTGGGATGCCAGAATAATCAGAATTGTCCACAGTGTTACCACCAACCA
CATCTTCTTCCTAGTAGTAATAAAGTAA
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