mRNA_H-akashiwo_Contig122.14.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig122.14.1
Unique NamemRNA_H-akashiwo_Contig122.14.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig122.14.1 vs. uniprot
Match: A0A7S3XY60_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XY60_HETAK)

HSP 1 Score: 178 bits (451), Expect = 7.250e-49
Identity = 78/127 (61.42%), Postives = 101/127 (79.53%), Query Frame = 3
Query:   84 FTHLDDETNAFLLRTMLKLVCGPGGLSPMASPLAATADPLFAAAHSLFHRHWSYLRLTNPNWDATFHQNMD-CYGHRANDVLPWQGFQGEEGEASRQYTNQDLMQVFAPSNPSLPFIHDSLDFSYCS 461
            F ++D   N FL+R MLK++C  GGLSPM+SPL ++ADPLFAA HSL++RHWSYLRL NP+WDATF++    CYG  A+DV+ WQGF GEEG+    YT Q+L+ +F+PSN +LP++HDSLDFSYCS
Sbjct:  545 FKNVDSIKNEFLMRAMLKILCSAGGLSPMSSPLGSSADPLFAATHSLYNRHWSYLRLANPDWDATFYEGTQTCYGFNADDVMVWQGFLGEEGDDLHFYTQQELLDIFSPSNAALPYMHDSLDFSYCS 671          
BLAST of mRNA_H-akashiwo_Contig122.14.1 vs. uniprot
Match: A0A7S3XK93_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XK93_HETAK)

HSP 1 Score: 144 bits (363), Expect = 8.440e-41
Identity = 70/126 (55.56%), Postives = 88/126 (69.84%), Query Frame = 3
Query:   84 FTHLDDETNAFLLRTMLKLVCGPGGLSPMASPLAATADPLFAAAHSLFHRHWSYLRLTNPNWDATFHQNMDCYGHRANDVLPWQGFQGEEGEASRQYTNQDLMQ-VFAPSNPSLPFIHDSLDFSYC 458
            F  +  E +  L R +++L CGPGGL  MA+  A+  DPLF   HS FHRHWS LRL   +WD TF ++MDCYGHRA+DV+PW+GF GEE     +YT Q+L+  V  P+NP+LPFIHDSLDFS C
Sbjct:   10 FAGVGAEEDHRLKRALVRLACGPGGLGTMATNSAS--DPLFVLVHSYFHRHWSALRLARRDWDTTFVEDMDCYGHRASDVMPWEGFLGEE--TPYRYTQQELVSSVLDPANPALPFIHDSLDFSSC 131          
BLAST of mRNA_H-akashiwo_Contig122.14.1 vs. uniprot
Match: A0A7S2CT26_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CT26_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.770e-17
Identity = 46/132 (34.85%), Postives = 84/132 (63.64%), Query Frame = 3
Query:   84 FTHLDDETNAFLLRTMLKLVCGPGGLSPMASPLAATADPLFAAAHSLFHRHWSYLRLTNPNWDATFH----QNMDCYG-HRANDVLPWQGF-QGEEGEASRQYTNQDLMQVFAPSNPSLPFIHDSLDFSYCS 461
            F ++ ++ N+ LL  +L  +C PG +    +PLAAT DPLF   HS + R W+Y+RL+ P++D+  +    ++ +C G +  +D LP++ F  GE+G+  + Y+N++L+ +F P NP LP+++    +S+C+
Sbjct:  174 FVNMTEDENSELLVFLLMAICHPGKMGQYGTPLAATNDPLFWPTHSSWGRLWAYVRLS-PDFDSFNNSWQNESPNCQGMYELHDTLPFKNFLPGEDGD--KFYSNKELIDLFDPKNPKLPYMYSGFQWSHCA 302          
BLAST of mRNA_H-akashiwo_Contig122.14.1 vs. uniprot
Match: A0A6V1TY89_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TY89_HETAK)

HSP 1 Score: 87.0 bits (214), Expect = 2.150e-16
Identity = 44/127 (34.65%), Postives = 75/127 (59.06%), Query Frame = 3
Query:   84 FTHLDDETNAFLLRTMLKLVCGPGGLSPMASPLAATADPLFAAAHSLFHRHWSYLRLT-NPNWDATFH-QNMDCYGHRANDVLPWQ--GFQGEEGEASRQYTNQDLMQVFAPSNPSLPFIHDSLDFS 452
            F   D+  +  L R +LK  C    +SP A+PL ++ADP+F   HS + ++++ + LT  P++D ++  +  DC+GH   D   W   G + + G +  +  N+++M+ F PSNP LP++HD L+FS
Sbjct:  412 FKEADESEDKALKRFLLKQACTASPISPFATPLGSSADPMFFPIHSYWMKYFARMALTATPDFDWSWDTRETDCWGHGEWDAPGWTDAGLRADGGGSGLRMKNREIMEFFNPSNPRLPYVHDHLEFS 538          
BLAST of mRNA_H-akashiwo_Contig122.14.1 vs. uniprot
Match: A0A7S2BXX5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BXX5_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.330e-15
Identity = 45/135 (33.33%), Postives = 74/135 (54.81%), Query Frame = 3
Query:   84 FTHLDDETNAFLLRTMLKLVCGPGGLSPMASPLAATADPLFAAAHSLFHRHWSYLRL----TNPNWDATFHQNMDCYGHRANDVLPWQGFQGEEGEASRQYTNQDLMQVFAPSNPSLPFIHDSLDFSYCS*IILN 476
            FT++  + N      +L   C PG +  M++  AA  DPLF   H LF R W+Y+RL    +  N++ T+  +  C G    D++PW+    +EG + + YTN+DL  +F P+N  L ++++  D+ +CS  I N
Sbjct:  394 FTNMTSDENREFFVFLLNYACNPGKMGAMSTGAAAN-DPLFWPIHPLFDRLWAYIRLDVDGSFSNFNHTWVDDASCQGRSYEDIMPWKDLL-DEG-SGKFYTNEDLYDLFDPTNEKLTYVYEHFDWEHCSSFIQN 525          
BLAST of mRNA_H-akashiwo_Contig122.14.1 vs. uniprot
Match: F0Y8X2_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8X2_AURAN)

HSP 1 Score: 72.8 bits (177), Expect = 2.050e-11
Identity = 44/122 (36.07%), Postives = 64/122 (52.46%), Query Frame = 3
Query:  129 MLKLVCGPGGLSPMASPLAATADPLFAAAHSLFHRHWSYLRLTNPN------------------WDATFHQNMD----CYGHRANDVLPWQGFQGEEGEASRQYTNQDLMQVFAPSNPSLPF 428
            + KLV  P  ++P A+PLAA+ DPLF   H+ + R W Y++L +P+                  WD   H  ++    C+G   +  LP+  F GE G   + YTN +LMQ+F P+NP LPF
Sbjct:  366 LAKLVLHPAKVAPYATPLAASNDPLFWVTHNAWERVWHYVQL-HPSTQYGNALYADSAERLKQYWDVN-HAGLEPYRVCWGRYWDAKLPFSDFLGE-GNHGQDYTNGELMQIFQPTNPDLPF 484          
BLAST of mRNA_H-akashiwo_Contig122.14.1 vs. uniprot
Match: A0A7S2FUY7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FUY7_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 5.000e-7
Identity = 30/119 (25.21%), Postives = 63/119 (52.94%), Query Frame = 3
Query:  117 LLRTMLKLVCGPGGLSPMASPLAATADPLFAAAHSLFHRHWSYLRLTNPNWDATFHQNMDCYGHRA----NDVLPWQGFQGEEGEASRQY-TNQDLMQVFAPSNPSLPFIHDSLDFSYC 458
            ++R  L++       S  +SPL +  DP+F   H+ + ++W+Y+RL   ++++++  +++    +     ++V+P     G        Y TN++L+++F PS P LP+I D   +  C
Sbjct:  321 IIRLALRIWAQIPKFSQFSSPLGSANDPIFWPIHTSYEKNWNYMRLKPGSFNSSWGNSLETMKVKGWDFDDEVMPCDDAYGIRRRPIGSYFTNRELVELFDPSRPELPYIFDDFGYEQC 439          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig122.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A7S3XY60_HETAK7.250e-4961.42Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
A0A7S3XK93_HETAK8.440e-4155.56Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2CT26_9STRA1.770e-1734.85Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6V1TY89_HETAK2.150e-1634.65Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2BXX5_9STRA1.330e-1533.33Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
F0Y8X2_AURAN2.050e-1136.07Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2FUY7_9STRA5.000e-725.21Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig122contigH-akashiwo_Contig122:1038254..1038869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009037158.1
PFAMsAbhydrolase_3,Say1_Mug180
Model size616
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.72e-13
EggNOG OGsCOG0657@1|root,KOG1515@2759|Eukaryota
Descriptioncarboxylic ester hydrolase activity
Cds size336
COG categoryI
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387124.803714-UTR-H-akashiwo_Contig122:1038253..10383811681387124.803714-UTR-H-akashiwo_Contig122:1038253..1038381Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig122 1038254..1038381 +
1681387124.8248599-UTR-H-akashiwo_Contig122:1038717..10388691681387124.8248599-UTR-H-akashiwo_Contig122:1038717..1038869Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig122 1038718..1038869 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387124.8150008-CDS-H-akashiwo_Contig122:1038381..10387171681387124.8150008-CDS-H-akashiwo_Contig122:1038381..1038717Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig122 1038382..1038717 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig122.14.1prot_H-akashiwo_Contig122.14.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig122 1038382..1038717 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig122.14.1

>prot_H-akashiwo_Contig122.14.1 ID=prot_H-akashiwo_Contig122.14.1|Name=mRNA_H-akashiwo_Contig122.14.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=112bp
MLKLVCGPGGLSPMASPLAATADPLFAAAHSLFHRHWSYLRLTNPNWDAT
FHQNMDCYGHRANDVLPWQGFQGEEGEASRQYTNQDLMQVFAPSNPSLPF
IHDSLDFSYCS*
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mRNA from alignment at H-akashiwo_Contig122:1038254..1038869+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig122.14.1 ID=mRNA_H-akashiwo_Contig122.14.1|Name=mRNA_H-akashiwo_Contig122.14.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=616bp|location=Sequence derived from alignment at H-akashiwo_Contig122:1038254..1038869+ (Heterosigma akashiwo CCMP452)
AAGATAAGATTGAAGCGATCGACCCGAGTTTTGCTGACATCATAGGGCTG GCGGAAAACAACAAATTTGCGCTGCAGCTTGCGTTTACACATTTGGACGA TGAAACGAACGCGTTTCTGCTGCGCACCATGCTCAAATTAGTCTGTGGCC CTGGAGGACTGAGCCCCATGGCCAGCCCACTTGCCGCCACAGCCGACCCA CTTTTTGCTGCGGCCCATTCGCTTTTTCACCGGCACTGGAGCTATCTGCG CTTGACCAACCCCAACTGGGATGCTACCTTTCACCAGAACATGGACTGCT ATGGCCATCGAGCGAATGATGTACTCCCGTGGCAAGGGTTTCAGGGGGAA GAAGGGGAGGCTTCGCGGCAATACACCAATCAGGACCTGATGCAAGTCTT TGCTCCGAGCAATCCATCCCTACCTTTCATCCATGACAGTCTGGACTTCT CTTACTGCTCTTAAATCATCTTGAATGAATAGATATTTCGCATTCTTCCA GAAGCATATTAGGAATACATTGCGACGTATTTCCATTGATAACTCGAAAT TTGTTAATGCTAACCCAGAGACGGTCATTTGACTTATTAATCAAATAAAA AATACATGGATAATTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig122:1038254..1038869+

>mRNA_H-akashiwo_Contig122.14.1 ID=mRNA_H-akashiwo_Contig122.14.1|Name=mRNA_H-akashiwo_Contig122.14.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=336bp|location=Sequence derived from alignment at H-akashiwo_Contig122:1038254..1038869+ (Heterosigma akashiwo CCMP452)
ATGCTCAAATTAGTCTGTGGCCCTGGAGGACTGAGCCCCATGGCCAGCCC
ACTTGCCGCCACAGCCGACCCACTTTTTGCTGCGGCCCATTCGCTTTTTC
ACCGGCACTGGAGCTATCTGCGCTTGACCAACCCCAACTGGGATGCTACC
TTTCACCAGAACATGGACTGCTATGGCCATCGAGCGAATGATGTACTCCC
GTGGCAAGGGTTTCAGGGGGAAGAAGGGGAGGCTTCGCGGCAATACACCA
ATCAGGACCTGATGCAAGTCTTTGCTCCGAGCAATCCATCCCTACCTTTC
ATCCATGACAGTCTGGACTTCTCTTACTGCTCTTAA
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