mRNA_H-akashiwo_Contig122.11.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig122.11.1
Unique NamemRNA_H-akashiwo_Contig122.11.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig122.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig122contigH-akashiwo_Contig122:814062..820986 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size611
Hectar predicted targeting categoryother localisation
Exons4
Cds size609
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387124.710485-CDS-H-akashiwo_Contig122:814061..8141301681387124.710485-CDS-H-akashiwo_Contig122:814061..814130Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig122 814062..814130 -
1681387124.7192247-CDS-H-akashiwo_Contig122:819836..8199411681387124.7192247-CDS-H-akashiwo_Contig122:819836..819941Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig122 819837..819941 -
1681387124.7275784-CDS-H-akashiwo_Contig122:820418..8205311681387124.7275784-CDS-H-akashiwo_Contig122:820418..820531Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig122 820419..820531 -
1681387124.735921-CDS-H-akashiwo_Contig122:820664..8209861681387124.735921-CDS-H-akashiwo_Contig122:820664..820986Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig122 820665..820986 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig122.11.1prot_H-akashiwo_Contig122.11.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig122 814062..820986 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig122.11.1

>prot_H-akashiwo_Contig122.11.1 ID=prot_H-akashiwo_Contig122.11.1|Name=mRNA_H-akashiwo_Contig122.11.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=203bp
EKQGRYCFTTEAVSNVCAYRLGLEALQKFFQIYSLQWFEMKLSAEKRRDR
MVEVNDGGSPKQFTGANQSYHGQLLSPEHQVERKALVKGDEDHFNWERTA
ASPPGKRGSVTQPLPTTPAQEMQRAPQRRHRRRPRATSVPGPSQQEEFTI
IETSEDWTQKNQGSSKGGGILPRHVNRRPEGPSPGVSPRSLSPNGSHRSL
SPP
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mRNA from alignment at H-akashiwo_Contig122:814062..820986-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig122.11.1 ID=mRNA_H-akashiwo_Contig122.11.1|Name=mRNA_H-akashiwo_Contig122.11.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=6925bp|location=Sequence derived from alignment at H-akashiwo_Contig122:814062..820986- (Heterosigma akashiwo CCMP452)
GAAAAGCAAGGTCGGTATTGCTTCACAACAGAAGCCGTTAGCAACGTCTG
TGCTTATCGGCTTGGTCTGGAGGCTTTGCAAAAATTCTTTCAGATTTACA
GCCTGCAGTGGTTTGAAATGAAGCTTTCTGCCGAAAAAAGACGAGATCGC
ATGGTTGAAGTCAATGACGGTGGCAGTCCAAAACAATTTACAGGGGCCAA
TCAGTCTTACCATGGACAGCTTCTATCTCCTGAGCACCAAGTTGAACGAA
AGGCTTTGGTTAAGGGTGATGAGGACCATTTTAATTGGGAAAGGACCGCG
GCTTCCCCGCCTGGCAAAAGAGGTGCGTGCATTTTATATTCTTTTTTGGC
CTGTTTCCGCTTTGAATGTTCCACAACCAGTTCTGGTCGCGCGAAGCTCC
ATACTAGACGATCTTTTGTTCTTTCACCTCCCATCTGTTCTGTGTGTATG
GGCAGGTTCAGTGACACAGCCTTTGCCTACAACGCCAGCACAGGAAATGC
AACGAGCCCCCCAGCGCCGGCACAGGAGAAGGCCACGGGCAACCTCAGTG
CCTGGACCATCACAACAGGTTTGTGCAGTGGTGAAGAGCTAGATCTGTCA
TGGATCATCGTGGTGTGTTTTGGATCGTGACTTGAAGGTCGTCAAGGTCA
TCAAGCTCCCCTCAAGTGCGAATTTAATGTATCTTCTCTTCATTTTTTGC
TGTGTTTTTTATTGCTGAGTAGGTGAGCTTTTTTCCGTTCATATCACCAT
CTTGCCCCGTAGGTGGACTTTTTGCCGTTCACACACATCGACATCTCGCC
CATGTAGTGCATGATCTTATTCCATATATCTATCAAATGCGTTATGTTAT
TCGTTATCTTGTGTGTGATAGAATATGTATATGATTAGATTGAATCATGC
ATTCAGCTGCCAGAGCATTTGTTTGTCTGTATGTCATGAAAGGCAAGTGT
CTTTAAATAGTTTGCTGAAATTCCCATGGTGTTGCTTAGTAGTCTTTCGC
CTCGGGTTAACACTCATGTTGCAGAATAAAAATATTTATGAACAGGAAGA
ATTTACAATCATTGAAACCAGTGAAGATTGGACACAGAAAAACCAAGGCT
CTTCGAAAGGAGGGGGGATCCTACCACGTCATGTAAATCGACGACCTGAG
GTGTGAAATTTCAACCAGCAGCACCCACAAATTCTGTGTTTTTTTTTTTT
TTTTTTTTTGTCTAATGCTACCTCTGCTCATGTCATTTGCATTTGCATTT
TCTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTCCTTCTTCTTTT
TCTTCTTTCTAATTCCATTGCCAAACTTCGTACACCTGTGCCTTTGAACA
TTCATCAAAGTCCATACACTTGTGTGCCTGTAAACATTCATCAGTCTTCG
ATTTTAGAAGGGGTTTGTTGAACAAATAAATCAACACAACTCCGAGGTGC
GACGACCGAACTAAACACCCCAACTAATACAACAATAGAAGAAAAGTGAG
GTAGAAGAAGTTGTTGAATGTGGCGATCTCGAGTACTTTATTATTTACTA
TATGTTGTGTATAGCTGCTGGTGGCCATTACCACAGGCAGCGAGTGTCTA
ACAATGTCTATGTACATCGATATCTAACCGGACCGTGTTGATCGTACTCC
TCCGGGCATATAACTTGACTGAGTCTGTATAAAGCAGTTCCCAGACCTCC
TGCTGCAATACTGCCTACGGTAATTACCCTCAGCGTAGTCTTTTCGAATG
CTGTTGTAAGAGAGGGGGGATTTATTTTTCGCTGCGATTGATTTGGGAAA
AATGCAGTCGATGGACCCAGCTGCTGTTGCTGATACAAAGACGGAACAGC
AGGGAAACAAGAAGATTTCGCCGTTCGGGAAAGGATCGGCGATGGCTGCT
GCTGGCGGTGTAAACACGAAGCAGCAGAACGAGAGTTTTTCGTCACCTAC
GACGATGGAAAAGCAGCTTGCTGCTACTGCTGCTGCTGACGGTTCGAGAG
TTGGTGTCAGGCTAAAGGGTACGGCCCTCTATGGGAAATTCGGCAAGATT
TTTACGAAATTTTCAAAAGTTCCAAAAATCATAATGATGCATGGGAATGT
AGTTAGGTGCACTCAGAACACATTTTTAAGGTTGTTGAAGGGCCCAATAC
TTCATTTTAGGCCATTTAAGCATGCCGACCTTCATGTTTAGTAGTGTAGT
AATGTGTTAAAAATGCTGCTATTCAAGCTGTGCCACCAGATCTCCGCCAA
AAAAAAACTCTGCTAAATAGATTTTACTTGTTTTAGGGTCCACACATTGT
TTGGATTCCATCAGTTGGTCCACACATTGTTTGGATTCTATCAGTTGGGG
GCTTTCTGGGAAGCTACCTCGGTCTACTGTGGGCCACTGAAGGGGTTTTA
GGCCATTTCTCCCTCCTAAACAATATAGTGTAACTCAGTATTGGTAAAAA
GTCGTTAGTTTCGGACGCATCTGTTCATCCAAGTGGATTTACTAGTGAAA
ATATATATGAGTAAATGATTTAAATCGCCTGAAGCGGCTTGAAAGTCCCA
TATTGCACCATTTTATACATAAATGCCAAGCAACAGAACAACGAAAACGG
CTCAACTTTCCACATTAAATGGGCTTCGAGACCCTCCGTTTCTTGCACTA
CAAGACACAGACCGCTGAGATGCGTTACTAGGTTGTTTAAGTTGAATTCA
TTCAAATATGTCGTCCAGCATAATGCCATTCGAAATTATCGTCCAGCATA
ATATATTATTCATCATTCGAAAGGAAGTGCAAGTATATAGCACTTTGCAG
CAATGCTATTTAGCCAAACATGGCGTTTTTTACACTTCAATTTTTTTATT
TTTTTTTTTAAGTGAAGTTTATAAGTTCGTGATTTTTCTTCATTTCGTGG
TTCTCGGTTCTCTATAAACGCGGGGGGGGGAAATATCTCAAAAAGTTCGT
TTGGGAAAATTGCAGTGAAGAGCTAAAAATGTGTATCTGTTTCAAATGTA
CATTTTCAGCTATTCACCGCAATTTTCCCAAAAGCAGAACGCGTTTTTTT
TGTCTGGGGTTATTCGCCAAGTTCTTGTATACTTTATAGCGTGACACCAA
CTCGAGCCCATTGCAGCGGCAGCAGTCAAGATTTCGAGGGCCCTCGTCGC
CATTCGATGGAAAAAGCCGCGCTAGTAGTTTCGGGTGTTACATATGTAAA
GGGCCTCACCTTCAGAGAGTGTGTCCCACTATTGAGCAAGGCAACAAAAT
AGTCTGCTTGAAATGCGGCGAGCCAGATCATCTGGTCGCTAGATGCACCA
AGCCGCGGAAGAAAAAAATTGGCGGCAGTGGTGGCAAAGTCAACGTTGCT
TCGGCGAAGGCCAGCCGAGCAGACGGCACCGGCGGTCCCTGCGGAGTTGG
CAACCGCGGTCATCTGTCCAGCAGCACGAGAAAGGTCCCGCAGGTAAAGG
CCAGCCTGGGAACGGGACCGGGGCGGGGTACAGCAGCCCGTCTCATCACC
GGCGGTGGTACTGGACCGAGCGTCACTGCACCGTCTTGTACAGTACAACA
TGGCAGCCGCGGTGAGTCACTTCATGGTGGACGACCCCTCCAGGACTCTC
GGCCTGGAAGGGGTGCGCAGGCGAAGGGCGCAACCCTCGCACCGACGGAG
CTCCCGGGGCATCGGCCCAAGGGGAGCGAGGACGCCAGCCGGCCGCCGGT
CCCAACAGCGGCGGGGCCGAGCTCGGCAGTCACAGAGCGCAGGTGGTGGG
CCCGGCCCCCGGCCAGCGCGGAGCCTCATGGTGTCGGTAGCCCAAGGGGA
CAGAGGGCGCCAGCCAGCTGCCAGACCCAAGGGTGGCAAGGCTGGGCTGG
GCAGCCCCGGTGTGCATGTGGTGGGCGCGGTCCCCATGGCACACGGAGCC
TCCGGGGCACCAGCCCCGAGAGGTGGCGACCGCGAGCCGGCACGCGTTCA
GGATGTTGGCGCTGCCGAGCTGCGCGGCCCCTTATCGCAGGTGGAGGGCG
CAGCCCCTATACTGCGTGGAGCCCCCAGGGCACCAGCCCTGGAGGATGGA
GGGCGTCAGTCGGCCGTCGGCCCGAAGGGCGGCGGGGCCGAGGTGGGCTG
CCCCAGTGCGCAGGCGGACGGCGCGGCCTCCGACCAGCGCGGAAACCCCT
GGGCCCCAGCCCGGCAGGGTCGAGAGCGCGAGCCAGCACACGGCCAGCCA
GGATGATGGCGGAGCTGGACTGCGCGACCCCCTTTCGCAGGCAGCGGGCT
CAACCCCCGCGCTGCGTGGAACCTCCAAGGCCCAGGCCACGGAGGATGGA
CGGCACCAGCCGGCCACGGGCCTGCATGACGGCGGAGCCGGGCTGGGCTG
CCAGAGCACAGATGAATGCATGCTTCTTCTTCAGGAAATTTTGGATGTTG
CCAGTTTGCCTGAAATGAGCCCGTCGGCGACACGGATATCGGGGAGGGCG
GCTGCCAAGCCTCCGAAACCTGCTGTGCGCCACATGTCTACCCAGACAGA
GCAGACTGAGCAAGAGCCAGCCACGAGGACCGCCGCGTGACTTCATGGGA
GGAGCCCGCTGGTGGCGAGCAAGCCACTGGTGGCGCGGACGCCGGCAATG
GAAGCTAAGTGCTCAGGGGCGCAGACCTCTGCCGGCATCAGACGCTAGAA
CAGAAGCTGGAGATGGTGAGGCGCTGCCCGCAAAGAGTCTCCGGAAGTTC
AGCAGGCTGCCGTGCGAGGGGGGGTGAGACCAAGTGTCGCCCGGACAGCT
ACTGTTCAGAAGAGGAGCAGCAGAGCTGGTGTAGAGAGACCAAAGCTCAA
AGTGGCTGACAGCTTTGAGAGTGTGCCATCGGTCTATTTGGATTTTGATC
GTGGAGTGTATGGCAGGCCGGTGGTGAATCAAGAAGGCACGATTGCTGGC
TGGTGGGGGGTCACTTCAACTGAACCCACAGCTAGGCGCGCTTGGCAGCA
GCTGGCATCTTTGCAGTGCAAGTTGGACTTGATTGACTGTGTTTGACAAA
GTTCAGTGCTCAGTTTGTGGAGCTCTGGGAGGGTTGCACTGCCAGTCCAG
ATGCTTGAAGAACCCTGGCAAGACCAACAAGGGACTACCTGGGACGAACT
TCCCGTCATGTGAGTAGTTGTAGACTCTTGGTTGATTCACGCTTCTACTG
TGGGGACTCCAGGGGAACAGGGGGAGCTTGACATGCTGTGAGCAGTACCT
ACCTCTGGTGGTGTTGATGTTTTTTGGTTGGACCAGCCAGACTTCGCCTT
CTTTGGCTCTGACTGGTCAGGGGGGGTGTTGAACAAATAAATCAACACAA
CTCCGAGGTGCGACGACCGAACTAAACACCCCAACTAATACAACAAGAGA
AGAAAAGTGAGGTAGAAGAAGTTGTTGAATGTGGTGATGTTGAGTACTTT
ATCATTTACTATATATGTTGTGTATAGCTGCTGGTGGCCAATATCACAGG
CAGCGAGTGTTTAACAATGTCTATGTACATCGATATCTAACCGTGTTGAG
CGTACTCCCTCGGGCATGACTTGACCGAGTCTGTATAAAAGTGGCCGTCA
GGATAAAGGTTGGGGTCTCCATAGAGTATTGAGTATACGGCGGATTTTTC
ACGAAAAGTTCAAAAGTTCCAAAAATCATAATAATTCATGGGGATACAGT
TGGGTGCACTCAGAACACATTTTAATGTTTTTTAAGGGCCCAATACATTA
TCTTAGGCCATTTGAGCATGCTGACCTTCGTGTGGTGTATTGTGGTGTTC
AAAATGCTAGCCAAGCTGTGCCACCAGATCTCCGCAAGGAAGCATGGAAA
AAAACTATAGAAAAGATATTTTACTTGTTTTAGGGTCCACATATTGTTTG
GGTTCTATCACTTGGGGGCTTTCTGGGGGGGATCTTGGTCTACTGTATGC
CACTCAAGAGGTTGTACTAAACAGTAATTTAATGGAACTCAAAATTGGTA
AGAGTCGTTGGTTTCAAACTCATTTTTTCATTCAAGTGGATTTACTATTG
AAAGTTCATAAGAGTAAATGATTCATAAATCGCCCAAAGCGGCCTGAAAG
TCCCATACCGCACCGTTTTACCCAAACATGCCAAGCCGCAGAACAACGAA
GAAAACGGCTCAACTTTCCACATTACATGGGCTTTGAGGCTCTTCGCTTC
TTTCACTGAAAGACACAGACCGCTGAGATGCGTTACTAGCTTGTTCAAGT
TGAATCAATTCGAGTGTGTCGTCCAAGCAAATCGATTGTTGGAGCGGGCG
CTGGCTGGCTGGTAGTATCATTATTTTCTTCGATAATCCTCCTGGTGATG
ATGATGATGTGGTGCTACTGCTCAGCAGCAGCAGCAGCAGCAGCAAGAAG
AAGGAGGAGCAGCAGTTGGAGGGAGGATTTGGTCGTTGTTAGTTGTTGAT
AATAATTCCAATTCCGTTGAATTTAGTGATTTCTTGGTTCGCGATTATAC
CTGTGGACGGGAAAATTATAACTCAAAAACTACATTTCCGCAATTGTGGG
AAATCAGCTCAAAAATTTCGCCGCTAAGCGGTGAATTTTTTTTTAGCTAC
TATTTTCCCAGTCCCCAGAATTTTTGTTTCGTTACACCTGCGGAAATGTA
GAACGCGATTTTTATTTTCGGGGCATTCCGCCGCAAAATACCCCCGTTTA
TTGTGACGGCCACTTAAAGCAGTTCCCAGTAGGGGTTGACCTCCTGCTGC
AATAGGGTTGATGGATTGTCTTTTTTTTTGTATTATTAACGGGTAACATG
GTGTGGTGTGAGGATGTGATATTTAGTTGTGTTTCAAGCACATTGAAAAG
GACTGTTTGGGTTTCCCATTCTGCGTACCCCCTCTGTCTCCCCCCCTCAT
CACCAGGGCCCCTCACCAGGGGTCTCGCCGCGCAGCCTGTCGCCCAACGG
GAGTCACCGCAGCCTGTCCCCGCCG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig122:814062..820986-

>mRNA_H-akashiwo_Contig122.11.1 ID=mRNA_H-akashiwo_Contig122.11.1|Name=mRNA_H-akashiwo_Contig122.11.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=609bp|location=Sequence derived from alignment at H-akashiwo_Contig122:814062..820986- (Heterosigma akashiwo CCMP452)
GAAAAGCAAGGTCGGTATTGCTTCACAACAGAAGCCGTTAGCAACGTCTG
TGCTTATCGGCTTGGTCTGGAGGCTTTGCAAAAATTCTTTCAGATTTACA
GCCTGCAGTGGTTTGAAATGAAGCTTTCTGCCGAAAAAAGACGAGATCGC
ATGGTTGAAGTCAATGACGGTGGCAGTCCAAAACAATTTACAGGGGCCAA
TCAGTCTTACCATGGACAGCTTCTATCTCCTGAGCACCAAGTTGAACGAA
AGGCTTTGGTTAAGGGTGATGAGGACCATTTTAATTGGGAAAGGACCGCG
GCTTCCCCGCCTGGCAAAAGAGGTTCAGTGACACAGCCTTTGCCTACAAC
GCCAGCACAGGAAATGCAACGAGCCCCCCAGCGCCGGCACAGGAGAAGGC
CACGGGCAACCTCAGTGCCTGGACCATCACAACAGGAAGAATTTACAATC
ATTGAAACCAGTGAAGATTGGACACAGAAAAACCAAGGCTCTTCGAAAGG
AGGGGGGATCCTACCACGTCATGTAAATCGACGACCTGAGGGCCCCTCAC
CAGGGGTCTCGCCGCGCAGCCTGTCGCCCAACGGGAGTCACCGCAGCCTG
TCCCCGCCG
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