mRNA_H-akashiwo_Contig1216.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1216.1.1
Unique NamemRNA_H-akashiwo_Contig1216.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1216.1.1 vs. uniprot
Match: UPI0015908EE1 (pogo transposable element with KRAB domain n=1 Tax=Zootoca vivipara TaxID=8524 RepID=UPI0015908EE1)

HSP 1 Score: 269 bits (687), Expect = 9.900e-83
Identity = 144/413 (34.87%), Postives = 248/413 (60.05%), Query Frame = 1
Query:    1 RRQSYSLQFKRKLLDEAAQTSNGKVSKKYSVSESMLRKWQRTLDSEKARNVKPTNQQSTLRLGGGGRPTILTAAQEHEIYEWVLHARDLNLIVMKSSIQGVALNIARRDGVDPSFKATEHWVDGFMVRHKLSLRRASTLFKLTDDKIVEKAVNYKLYIEQLRRIRDGDFWCHD-CHVF--DETAVYAGQMSNTTIDRKGRSCVGIPANGYESERVTVMLHFDLGGRKGKPIIIAEDTTMEPGQCCWEDRPDDNVTILYTHKAWANQQACRRIINHVVPLAGRGKRRGLVIWDAAASHRAKAVKNYVLRRRCSVVMIPSGMTWLLQGLDTVINRPFKVYLRKCINRYFANNPPRNHRGNIKKPSLDLIIEWVTRAWAKITNAHIEEAVKHYYLHPHHGWADTKAAKHEKFGDLI 1230
            +R+SY++++K+ +++++   +     K+ ++   M++KW+   D+   + V         + G G +P++     E  I EW+   R   L+V ++ IQ  AL +A +  V P FKA++HW+DGF+ R++LSLR+++TLF+L D ++V++A+ +K +++ +      DF  +  C++   DETAV+ GQ + TTI+++G S + +P+ G+ES RVT +L   L G+K  P+IIA+    +  +          + +L + KAW  Q   RR ++ ++PL  RG +RGL++WD+A++HRAK +K ++  RR   +MIP+GMT  LQ LD  IN+PFK +LR  IN Y  N   RN RGN  KP+L  ++ WV  +W KIT + +  A++  YL     + ++  A+HE+ G ++
Sbjct:    4 KRRSYTVEYKKGIVEDSQGKNLTAFCKEKNLDIRMVQKWRAEYDNLSLQVV--IGNAKKRKCGAGRQPSV--PELEDMISEWIAERRAKALVVRRADIQAFALAMASQFEVSPEFKASQHWLDGFLQRYELSLRKSTTLFRLEDAEVVKRALAFKSFVDGI------DFSKYQLCNMIAMDETAVFMGQGAQTTIEQRGASSIYVPSTGHESSRVTCILAIRLDGKKATPVIIAKGKKDKIERV-------SGIYVLESEKAWCTQAVIRRWLDLMLPLVTRGGQRGLLVWDSASTHRAKDMKKFLAERRIDQIMIPAGMTAYLQTLDIAINKPFKDHLRMEINDYIENRMTRNQRGNFVKPNLQEVVNWVKNSWDKITESVVANALRAGYLDKRCSFTESSIAQHERLGPMV 399          
BLAST of mRNA_H-akashiwo_Contig1216.1.1 vs. uniprot
Match: A0A087U6Z6_STEMI (Pogo transposable element with KRAB (Fragment) n=13 Tax=Stegodyphus mimosarum TaxID=407821 RepID=A0A087U6Z6_STEMI)

HSP 1 Score: 260 bits (664), Expect = 2.560e-79
Identity = 137/377 (36.34%), Postives = 220/377 (58.36%), Query Frame = 1
Query:  103 MLRKWQRTLDSEKARNVKPTNQQSTLRLGGGGRPTILTAAQEHEIYEWVLHARDLNLIVMKSSIQGVALNIARRDGVDPS-FKATEHWVDGFMVRHKLSLRRASTLFKLTDDKIVEKAVNYKLYIEQLRRIRDGDFWCHDCHVFDETAVYAGQMSNTTIDRKGRSCVGIPANGYESERVTVMLHFDLGGRKGKPIIIAEDTTMEPGQCCWEDRPDDNVTILYTHKAWANQQACRRIINHVVPLAGRGKRRGLVIWDAAASHRAKAVKNYVLRRRCSVVMIPSGMTWLLQGLDTVINRPFKVYLRKCINRYFANNPPRNHRGNIKKPSLDLIIEWVTRAWAKITNAHIEEAVKHYYLHPHHGWADTKAAKHEKFGDLI 1230
            M+RKW+   D +    +     +   R+G G +P  L +  E  I+EW+   R + L+V ++ IQ  AL  A    +    FKA+ HW+D F+ R++LSLRR++TLFKL D+++V++A+ +KL+++    I    +   +    DETAV+ GQ + TT+  K  S + +P+ GY S RVT +L   L G+K  P +I +    +  +          + ++ + KAW  Q   R+ ++ ++P   RG+ RGL++WD+A++HRAK +KN++  R+   +MIP+GMT  LQ LD  IN+PFK +LR  IN Y  N   RNHRGN  KP L  ++ WV  +W KIT++ +  A++  YL   + + D+  A+HE+FG +I
Sbjct:    6 MVRKWR--ADYDYLCQLVDQGNEKKRRVGSGRQP--LFSELEDCIWEWIAGRRAMALVVRRADIQKFALETAIEFDISTEEFKASSHWLDNFLKRYELSLRRSTTLFKLEDNEVVKRALAFKLFVDG---IDFSKYQLSNMIAMDETAVFLGQGAQTTVHHKASSSIYVPSTGYNSARVTCILAIRLDGKKVSPFLITKGKKDQIQRV-------SGIYVIESEKAWCTQAVIRKWVDFMLPPLLRGQNRGLLVWDSASTHRAKDMKNFLAERKIDQIMIPAGMTGYLQTLDIAINKPFKDHLRMEINEYIENRMVRNHRGNFVKPGLQEVVNWVKNSWDKITDSDVSNALRTGYLDKKYSFNDSYIARHERFGPMI 368          
BLAST of mRNA_H-akashiwo_Contig1216.1.1 vs. uniprot
Match: A0A7J8AZF6_PIPKU (DnaJ heat shock protein family (Hsp40) member C17 n=1 Tax=Pipistrellus kuhlii TaxID=59472 RepID=A0A7J8AZF6_PIPKU)

HSP 1 Score: 263 bits (671), Expect = 3.580e-79
Identity = 153/414 (36.96%), Postives = 242/414 (58.45%), Query Frame = 1
Query:    1 RRQSYSLQFKRKLLDEAAQTSNGKVSKKYSVSESMLRKWQRTLDSEKARNVKPTNQQSTLRLGGGGRPTILTAAQEHEIYEWVLHARDLNLIVMKSSIQGVALNIARRDGVDPS-FKATEHWVDGFMVRHKLSLRRASTLFKLTDDKIVEKAVNYKLYIEQLRRIRDGDFWCHDCH---VFDETAVYAGQMSNTTIDRKGRSCVGIPANGYESERVTVMLHFDLGGRKGKPIIIAEDTTMEPGQCCWEDRPDDNVTILYTHKAWANQQACRRIINHVVPLAGRGKRRGLVIWDAAASHRAKAVKNYVLRRRCSVVMIPSGMTWLLQGLDTVINRPFKVYLRKCINRYFANNPPRNHRGNIKKPSLDLIIEWVTRAWAKITNAHIEEAVKHYYLHPHHGWADTKAAKHEKFGDLI 1230
            +R+SYS+++K+ +++++   +     K+  +S  ++RKW+    +E    ++  ++ +  +   G     L +  E  I EWV+  R   L+V ++ IQ  AL +A +  + P  FKA++HW+D F+ R +LSLRR++TLF+L D +++++A+ +K +I+      D DF  +        DETAV+ GQ S TTI+++G S V IP+  YES RV+ +L   L G K  P+II++    E  +C         V IL T KAWA Q   R+ ++ ++PL  RG  RGL++WDAA++HRAK +K ++  R+   +MIP+GMT  L  LD  IN+PFK  LR  IN Y  N   RN  GN  +P L  ++ WV  +W KIT++ I  A++  YL   + + D+  AKHE+FG LI
Sbjct:  103 KRKSYSVEYKKGIVEDSWGQNLTAFCKEKMLSIRLVRKWR----AEYGNLIEQVDKGNAKKCKCGSGRQPLFSELEDLICEWVVDRRAKALVVNRAQIQEFALAMAPQFDIAPEDFKASQHWLDNFLQRSELSLRRSTTLFRLEDTQVIKRALAFKSFID------DADFSKYSLSNMIAMDETAVFMGQSSQTTIEQRGASLVYIPSTAYESARVSCILAIRLDGTKIPPLIISKGK-KEKIECVL------GVFILETEKAWATQAVIRKWVDLMLPLVMRGSERGLLVWDAASTHRAKDMKTFLHERKIDQIMIPAGMTTYLHTLDIAINKPFKDNLRMEINDYIENRMERNQHGNFVEPKLQEVVTWVKNSWEKITDSSIANALRAGYLDKKYSFKDSAIAKHERFGPLI 499          
BLAST of mRNA_H-akashiwo_Contig1216.1.1 vs. uniprot
Match: A0A803JQY6_XENTR (HTH CENPB-type domain-containing protein n=2 Tax=Xenopus tropicalis TaxID=8364 RepID=A0A803JQY6_XENTR)

HSP 1 Score: 256 bits (653), Expect = 1.250e-77
Identity = 155/412 (37.62%), Postives = 243/412 (58.98%), Query Frame = 1
Query:    1 RRQSYSLQFKRKLLDEA-AQTSNGKVSKKYSVSESMLRKWQRTLDSEKARNVKPTNQQSTLRLGGGGRPTILTAAQEHEIYEWVLHARDLNLIVMKSSIQGVALNIARR-DGVDPSFKATEHWVDGFMVRHKLSLRRASTLFKLTDDKIVEKAVNYKLYIEQLRRIRDGDFWCHDCHVFDETAVYAGQMSNTTIDRKGRSCVGIPANGYESERVTVMLHFDLGGRKGKPIIIAEDTTMEPGQCCWEDRPDDNVTILYTHKAWANQQACRRIINHVVPLAGRGKRRGLVIWDAAASHRAKAVKNYVLRRRCSVVMIPSGMTWLLQGLDTVINRPFKVYLRKCINRYFANNPPRNHRGNIKKPSLDLIIEWVTRAWAKITNAHIEEAVKHYYLHPHHGWADTKAAKHEKFGDLI 1230
            +R+SYS+++KR++++++  Q  +    KK  ++  ++RKW R    +    V+  N  +  R  G GR  I +  ++  I EWV+  R   L+V ++ IQ  AL +A   D     FKA++HW+D F+ R +LSLRR++TLF+L D +++++A+ +K +I+ ++  +   +   +    DETAV+  Q S TTI+++G S V IP+  YES  VT +L   L G K  P+II++    +  +          + +L T KAWA Q   R+ ++ ++PL  RG +RGL++ DAA++HRAK +K+++  R+   VMIP+GMT  LQ LD  IN+PFK  LR  IN Y  N   RN RGN  KP L  I+ WV  +W KIT+  IE A++  YL   + + D+  AK E+FG LI
Sbjct:    4 KRKSYSVEYKRRIVEDSWGQNLHTFCKKKKMLNMRLVRKW-RAEYGKLIEQVEKGN--AKQRKYGSGRQPIFSELEDL-ICEWVVDRRAKALVVNRAQIQEFALAMAPHFDIAHEDFKASQHWLDNFLQRSELSLRRSTTLFRLEDAQVIKRALAFKSFIDDIKLSK---YNLSNMIAMDETAVFKRQSSQTTIEQRGASSVYIPSTAYESACVTCILAIRLDGTKIPPLIISKGKKEKIERVL-------GIFVLETEKAWATQAVIRKWVDLMLPLVMRGGQRGLLVSDAASTHRAKDMKSFLHERKIDQVMIPAGMTAYLQTLDIAINKPFKDNLRMEINDYIENRMERNQRGNFVKPKLQEIVTWVKNSWEKITDRCIEHALRAGYLDKKYSFKDSAIAKRERFGPLI 401          
BLAST of mRNA_H-akashiwo_Contig1216.1.1 vs. uniprot
Match: A0A7J7W768_RHIFE (Uncharacterized protein n=1 Tax=Rhinolophus ferrumequinum TaxID=59479 RepID=A0A7J7W768_RHIFE)

HSP 1 Score: 258 bits (658), Expect = 5.090e-77
Identity = 145/411 (35.28%), Postives = 241/411 (58.64%), Query Frame = 1
Query:    1 RRQSYSLQFKRKLLDEAAQTSNGKVSKKYSVSESMLRKWQRTLDSEKARNVKPTNQQSTLRLGGGGRPTILTAAQEHEIYEWVLHARDLNLIVMKSSIQGVALNIARRDGVDPS-FKATEHWVDGFMVRHKLSLRRASTLFKLTDDKIVEKAVNYKLYIEQLRRIRDGDFWCHDCHVFDETAVYAGQMSNTTIDRKGRSCVGIPANGYESERVTVMLHFDLGGRKGKPIIIAEDTTMEPGQCCWEDRPDDNVTILYTHKAWANQQACRRIINHVVPLAGRGKRRGLVIWDAAASHRAKAVKNYVLRRRCSVVMIPSGMTWLLQGLDTVINRPFKVYLRKCINRYFANNPPRNHRGNIKKPSLDLIIEWVTRAWAKITNAHIEEAVKHYYLHPHHGWADTKAAKHEKFGDLI 1230
            +R+SYS+++K+ +++++   +     K+  +   M+RKW+   D+  ++ V   N  +  R  G GR  +    ++  I EW+   R   L V ++ IQ  AL +A +  + P  FKA++HW+DGF+ R++LSLR ++TLFKL D +++++A+ +K +++    I    +   +    DETAV+ GQ S TT+D +G S + IP+ GYES RVT +L   L G+K  P+II +    +  +C         + +L T K W  Q   R+ ++ ++PL  RG +RGL++WD+A++HRAK +KN++  RR   +MIP+GMT  LQ LD  IN+PFK +LR  IN Y  N+  RN   N  KPSL  ++ WV  +W KIT++ +  A++  Y+     + ++  A HE+ G ++
Sbjct:  125 KRKSYSVEYKKGIVEDSRGKNLTAFCKEKKLDLRMVRKWRAEYDNL-SQQVDEGN--AKKRKCGSGRQPLFPELEDI-ICEWIADRRAKALAVRRADIQAFALAMAPQLEISPEEFKASQHWLDGFLQRYELSLR-STTLFKLEDTEVIKRALAFKSFVDG---IDFSKYQLSNMIAMDETAVFMGQGSQTTVDHRGASSIYIPSTGYESARVTCILAIRLDGKKAPPLIITKGKN-DKVECV------SGIYVLETEKVWCTQAVIRKWVDLMLPLVLRGGQRGLLVWDSASTHRAKDIKNFLAERRIDQIMIPAGMTAYLQALDVAINKPFKDHLRMEINDYIENSMERNQHRNFVKPSLQEVVTWVKNSWDKITDSCVANALRAGYMDRKCSFKESSIAGHERLGPMV 520          
BLAST of mRNA_H-akashiwo_Contig1216.1.1 vs. uniprot
Match: A0A7J8B2I9_PIPKU (HTH CENPB-type domain-containing protein n=2 Tax=Pipistrellus kuhlii TaxID=59472 RepID=A0A7J8B2I9_PIPKU)

HSP 1 Score: 255 bits (651), Expect = 1.550e-75
Identity = 150/415 (36.14%), Postives = 243/415 (58.55%), Query Frame = 1
Query:    1 RRQSYSLQFKRKLLDEAAQTSNGKVSKKYSVSESMLRKWQRTLDSEKARNVKPTNQ-QSTLRLGGGGRPTILTAAQEHEIYEWVLHARDLNLIVMKSSIQGVALNIARRDGVDPS-FKATEHWVDGFMVRHKLSLRRASTLFKLTDDKIVEKAVNYKLYIEQLRRIRDGDFWCHDCH---VFDETAVYAGQMSNTTIDRKGRSCVGIPANGYESERVTVMLHFDLGGRKGKPIIIAEDTTMEPGQCCWEDRPDDNVTILYTHKAWANQQACRRIINHVVPLAGRGKRRGLVIWDAAASHRAKAVKNYVLRRRCSVVMIPSGMTWLLQGLDTVINRPFKVYLRKCINRYFANNPPRNHRGNIKKPSLDLIIEWVTRAWAKITNAHIEEAVKHYYLHPHHGWADTKAAKHEKFGDLI 1230
            +R+SYS+++K+ +++++   +     K+  +S  ++RKW+    +E    ++  ++  +  R  G GR  + +  ++  I EWV+  R    +V ++ IQ  AL +A +  + P  FKA++HW+D F+ R +LSLRR++TLF+L D +++++A+ +K +I+      D DF  ++       DETAV+ GQ S TTI+++G S   IP+  YES RV+ +L   L G K  P+II++    +  +          V IL T KAWA Q   R+ ++ ++PL  RG +RGL++WDAA++HRAK +K ++  R+   +MIP+GMT  L  LD  IN+PFK  L   IN Y  N   RN  GN  KP L  ++ WV  +W KIT++ I  A++  YL   + + D+  AKHE+FG LI
Sbjct:  168 KRKSYSVEYKKGIVEDSWGQNLTVFCKEKMLSMRLVRKWR----AEYGNLIEQVDKGNAKKRKCGSGRQPLFSELEDL-ICEWVVDRRAKASVVNRAQIQEFALAMAPQFDIAPEDFKASQHWLDNFLQRSELSLRRSTTLFRLEDTQVIKRALAFKSFID------DADFSKYNLSNMIAMDETAVFMGQSSQTTIEQRGASLAYIPSTAYESARVSCILAIRLDGTKIPPLIISKGKKEKIERIL-------GVFILETEKAWATQAVIRKWVDLMLPLVMRGSQRGLLVWDAASTHRAKDMKTFLQERKIDQIMIPAGMTAYLHTLDIAINKPFKDNLHMEINDYVENRMERNQCGNFVKPKLQEVVTWVKNSWEKITDSCIANALRAGYLDKKYSFKDSAIAKHERFGPLI 564          
BLAST of mRNA_H-akashiwo_Contig1216.1.1 vs. uniprot
Match: A0A7J7YJS0_RHIFE (R3H domain containing 1 n=1 Tax=Rhinolophus ferrumequinum TaxID=59479 RepID=A0A7J7YJS0_RHIFE)

HSP 1 Score: 255 bits (652), Expect = 5.650e-75
Identity = 149/416 (35.82%), Postives = 247/416 (59.38%), Query Frame = 1
Query:    1 RRQSYSLQFKRKLLDEAAQTSNGKVSKKYSVSESMLRKWQRTLDSEKARNVKPTNQQSTLRLGGGGRPTILTAAQEHEIYEWVLHARDLNLIVMKSSIQGVALNIARRDGVDPS-FKATEHWVDGFMVRHKLSLRRASTLFKLTDDKIVEKAVNYKLYIEQLRRIRDGDFWCHD-CHVF--DETAVYAGQMSNTTIDRKGRSCVGIPANGYESERVTVMLHFDLGGRKGKPIIIAEDTTMEPGQCCWEDRPD--DNVTILYTHKAWANQQACRRIINHVVPLAGRGKRRGLVIWDAAASHRAKAVKNYVLRRRCSVVMIPSGMTWLLQGLDTVINRPFKVYLRKCINRYFANNPPRNHRGNIKKPSLDLIIEWVTRAWAKITNAHIEEAVKHYYLHPHHGWADTKAAKHEKFGDLI 1230
            +R+SYS+++K+ +++++   +     KK  +   M+RKW+   D+  ++ V   N  +  R  G GR  +    ++  I EW+   R   L+V ++ IQ  AL +A +  V P  FKA++HW+DGF+ R++LSLR ++TLFKL D +++++A+ +K +++ +      DF  +  C++   DETAV+ GQ S TTID++G S + IP+  YES RVT +L   L G+K  P+II +           +D+ +    + +L T KAW  Q   R+ ++ ++PL  RG +RGL++WD+A++HRAK +K+++  RR   +MIP+GMT  LQ LD  IN+ FK +LR  IN Y  N   RN  GN  KPSL  ++ WV  +W KIT++ +  A++  Y+     + ++  A HE+ G ++
Sbjct:  245 KRKSYSIEYKKGIVEDSRGKNLTAFCKKKKLDLRMVRKWRAEYDNL-SQQVDEGN--AKKRKCGSGRQPLFPELEDI-ICEWIADRRAKALVVRRADIQAFALAMAPQLEVSPEEFKASQHWLDGFLQRYELSLR-STTLFKLEDTEVIKRALAFKSFVDGI------DFSKYQLCNMIAMDETAVFIGQGSQTTIDQRGASSIYIPSTCYESARVTCILAIRLDGKKAPPLIITKGK---------KDKVEHVSGIYVLETEKAWCTQAVIRKWVDLMLPLVLRGGQRGLLVWDSASTHRAKDMKHFLAERRIDQIMIPAGMTAYLQTLDIAINKTFKDHLRMEINEYIENRMERNQHGNFVKPSLQEVVTWVKNSWDKITDSCVASALRAGYMDKKCSFKESSIAGHERLGPMV 640          
BLAST of mRNA_H-akashiwo_Contig1216.1.1 vs. uniprot
Match: UPI000C7F253F (myeloid zinc finger 1 isoform X2 n=1 Tax=Otolemur garnettii TaxID=30611 RepID=UPI000C7F253F)

HSP 1 Score: 258 bits (658), Expect = 9.170e-75
Identity = 143/413 (34.62%), Postives = 243/413 (58.84%), Query Frame = 1
Query:    1 RRQSYSLQFKRKLLDEAAQTSNGKVSKKYSVSESMLRKWQRTLDSEKARNVKPTNQQSTLRLGGGGRPTILTAAQEHEIYEWVLHARDLNLIVMKSSIQGVALNIARRDGVDPSFKATEHWVDGFMVRHKLSLRRASTLFKLTDDKIVEKAVNYKLYIEQLRRIRDGDFWCHD-CHVF--DETAVYAGQMSNTTIDRKGRSCVGIPANGYESERVTVMLHFDLGGRKGKPIIIAEDTTMEPGQCCWEDRPDDNVTILYTHKAWANQQACRRIINHVVPLAGRGKRRGLVIWDAAASHRAKAVKNYVLRRRCSVVMIPSGMTWLLQGLDTVINRPFKVYLRKCINRYFANNPPRNHRGNIKKPSLDLIIEWVTRAWAKITNAHIEEAVKHYYLHPHHGWADTKAAKHEKFGDLI 1230
            +R+SYS+++K+ +++++   +     K+  +   M+RKW+   D+    ++      +  R  G  R  +     E+ I EW+   R   L+V ++ IQ  AL +A +  + P FKA++HW+DGF+ RH+LSLR+++TL KL D +++++A+ +K +++ +      DF  +  C++   DETAV+ GQ + TTI+++G S + IP+  +ES RVT +L   L G+K  P+II +    E  +C         + +L T KAW  Q   R+ ++ ++PL  +G +RGL++WD+A++H AK +KN++  R+   +MIP+GMT  L  LD  IN+PFK YLR  IN Y  N   RN RGN  KPSL  ++ WV  +W KIT++ +  A++  Y+     + ++  A HE+ G ++
Sbjct:  382 KRKSYSVEYKKGIVEDSQGKNLTAFCKEKKLDIRMVRKWRAEYDNL---SLHVDRGNAKKRKCGSVRQPLFPEL-ENIICEWIADRRAKALVVRRADIQAFALAMAPQFEISPEFKASQHWLDGFLQRHELSLRKSTTLSKLEDAEVIKRALAFKSFVDGI------DFSKYQPCNMIAMDETAVFMGQGAQTTIEQRGASSIYIPSTDHESSRVTCILAIHLDGKKATPLIITKGK-KEKIECV------SGIYVLETEKAWCTQAVIRKWLDLMLPLVLQGGQRGLLVWDSASTHCAKDMKNFLAERKIDQIMIPAGMTAYLHTLDIAINKPFKDYLRMEINNYIENRMTRNQRGNFMKPSLQEVVTWVKNSWNKITDSVVANALRAGYMDKSCTFNESSIALHERLGPMV 777          
BLAST of mRNA_H-akashiwo_Contig1216.1.1 vs. uniprot
Match: A0A087T985_STEMI (Pogo transposable element with KRAB (Fragment) n=2 Tax=Stegodyphus mimosarum TaxID=407821 RepID=A0A087T985_STEMI)

HSP 1 Score: 240 bits (612), Expect = 1.930e-72
Identity = 128/356 (35.96%), Postives = 207/356 (58.15%), Query Frame = 1
Query:  103 MLRKWQRTLDSEKARNVKPTNQQSTLRLGGGGRPTILTAAQEHEIYEWVLHARDLNLIVMKSSIQGVALNIARRDGVDPS-FKATEHWVDGFMVRHKLSLRRASTLFKLTDDKIVEKAVNYKLYIEQLRRIRDGDFWCHDCHVFDETAVYAGQMSNTTIDRKGRSCVGIPANGYESERVTVMLHFDLGGRKGKPIIIAEDTTMEPGQCCWEDRPDDNVTILYTHKAWANQQACRRIINHVVPLAGRGKRRGLVIWDAAASHRAKAVKNYVLRRRCSVVMIPSGMTWLLQGLDTVINRPFKVYLRKCINRYFANNPPRNHRGNIKKPSLDLIIEWVTRAWAKITNAHIEEAVKHYYL 1167
            M+RKW+   D +    +     +   R+G G +P  L +  E  I+EW+   R + L+V ++ IQ  AL  A    +    FKA+ HW+D F+ R++LSLRR++TLFKL D+++V++A+ +KL+++    I    +   +    DETAV+ GQ + TT+  K  S + +P+ GY+S RVT +L   L G+K  P +I +    +  +          + ++ + KAW  Q   R+ ++ ++P   RG+ RGL++WD+A+ HRAK +KN++  R+   +MIP+GMT  LQ L+  IN+PFK +LR  IN Y  N   RNHR N  KP L  ++ WV  +W KIT++ + +A++  YL
Sbjct:    6 MVRKWR--ADYDYLCQLVDQGNEKKRRVGSGRQP--LFSELEDCIWEWIAGRRAMALVVRRADIQKFALETAIEFDISTEEFKASSHWLDNFLKRYELSLRRSTTLFKLEDNEVVKRALAFKLFVDG---IDFSKYQLSNMIAMDETAVFLGQGAQTTVHHKASSSIYVPSTGYDSARVTCILAIRLDGKKVSPFLITKGKKDQIQRV-------SGIYVIESEKAWCTQAVIRKWVDFMLPQLLRGQNRGLLVWDSASIHRAKDMKNFLAERKIDQIMIPAGMTGYLQTLNIAINKPFKDHLRMEINEYIENRMVRNHRYNFVKPGLQEVVNWVKNSWDKITDSDVSKALRTGYL 347          
BLAST of mRNA_H-akashiwo_Contig1216.1.1 vs. uniprot
Match: A0A671EIT6_RHIFE (Uncharacterized protein n=7 Tax=Amniota TaxID=32524 RepID=A0A671EIT6_RHIFE)

HSP 1 Score: 250 bits (639), Expect = 4.270e-72
Identity = 142/411 (34.55%), Postives = 238/411 (57.91%), Query Frame = 1
Query:    1 RRQSYSLQFKRKLLDEAAQTSNGKVSKKYSVSESMLRKWQRTLDSEKARNVKPTNQQSTLRLGGGGRPTILTAAQEHEIYEWVLHARDLNLIVMKSSIQGVALNIARRDGVDPS-FKATEHWVDGFMVRHKLSLRRASTLFKLTDDKIVEKAVNYKLYIEQLRRIRDGDFWCHDCHVFDETAVYAGQMSNTTIDRKGRSCVGIPANGYESERVTVMLHFDLGGRKGKPIIIAEDTTMEPGQCCWEDRPDDNVTILYTHKAWANQQACRRIINHVVPLAGRGKRRGLVIWDAAASHRAKAVKNYVLRRRCSVVMIPSGMTWLLQGLDTVINRPFKVYLRKCINRYFANNPPRNHRGNIKKPSLDLIIEWVTRAWAKITNAHIEEAVKHYYLHPHHGWADTKAAKHEKFGDLI 1230
            +R+SYS+++K+++++++   +     K+  +   M+RKW+   D+  ++ V   N  +  R  G GR  +    ++  I EW+   +   L+V ++ IQ  AL +A +  + P  FKA++HW+DGF+ R++LSLR A TLF L D +++++A+ +K +++    I    +   +    DETAV+ GQ S TT+D++G      P+ GY+S RVT +L   L G+K  P+II +       +          + +L T KAW  Q   R+ ++ ++PL  RG +RGL++WD+A++HR+K +KN++  RR   +MIP+GMT  LQ LD  IN+PFK +LR  IN Y  N   RN  GN  KPSL  I+ WV  +W KIT++ +  A++  Y+     + ++  A HE+ G ++
Sbjct:  372 KRKSYSVEYKKRIVEDSRGKNLTAFCKEKKLDLRMVRKWRAEYDNL-SQQVDEGN--AKKRKCGSGRQPLFPELEDI-ICEWIADRKAKALVVRRADIQAFALAMAPQLEISPEEFKASQHWLDGFLQRYELSLRSA-TLFTLEDTEVIKRALAFKSFVDG---IDFSKYQFSNMIAMDETAVFMGQGSQTTVDQRGALSTYTPSTGYQSGRVTCILAIHLDGKKAPPLIITKGKKDNVERV-------SGIYVLETEKAWCTQAVIRKWVDLMLPLVLRGGQRGLLVWDSASTHRSKDMKNFLAERRIDQIMIPAGMTAYLQTLDIAINKPFKDHLRMEINDYIENRMERNQCGNFVKPSLQEIVTWVKNSWDKITDSCVASALRAGYMDKKCSFKESSIAGHERLGPMV 767          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1216.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0015908EE19.900e-8334.87pogo transposable element with KRAB domain n=1 Tax... [more]
A0A087U6Z6_STEMI2.560e-7936.34Pogo transposable element with KRAB (Fragment) n=1... [more]
A0A7J8AZF6_PIPKU3.580e-7936.96DnaJ heat shock protein family (Hsp40) member C17 ... [more]
A0A803JQY6_XENTR1.250e-7737.62HTH CENPB-type domain-containing protein n=2 Tax=X... [more]
A0A7J7W768_RHIFE5.090e-7735.28Uncharacterized protein n=1 Tax=Rhinolophus ferrum... [more]
A0A7J8B2I9_PIPKU1.550e-7536.14HTH CENPB-type domain-containing protein n=2 Tax=P... [more]
A0A7J7YJS0_RHIFE5.650e-7535.82R3H domain containing 1 n=1 Tax=Rhinolophus ferrum... [more]
UPI000C7F253F9.170e-7534.62myeloid zinc finger 1 isoform X2 n=1 Tax=Otolemur ... [more]
A0A087T985_STEMI1.930e-7235.96Pogo transposable element with KRAB (Fragment) n=2... [more]
A0A671EIT6_RHIFE4.270e-7234.55Uncharacterized protein n=7 Tax=Amniota TaxID=3252... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1216contigH-akashiwo_Contig1216:81011..82285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog48698.ENSPFOP00000007061
PFAMsDDE_1,HTH_Tnp_Tc5
Model size1233
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.61e-68
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota,3A5I5@33154|Opisthokonta,3BS6E@33208|Metazoa,3D93F@33213|Bilateria,48IFC@7711|Chordata,49E7G@7742|Vertebrata
DescriptionPutative DNA-binding domain in centromere protein B, mouse jerky and transposases.
Cds size1233
COG categoryBD
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387123.9453337-CDS-H-akashiwo_Contig1216:81010..814931681387123.9453337-CDS-H-akashiwo_Contig1216:81010..81493Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1216 81011..81493 +
1681387123.9564586-CDS-H-akashiwo_Contig1216:81535..822851681387123.9564586-CDS-H-akashiwo_Contig1216:81535..82285Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1216 81536..82285 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1216.1.1prot_H-akashiwo_Contig1216.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1216 81011..82285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1216.1.1

>prot_H-akashiwo_Contig1216.1.1 ID=prot_H-akashiwo_Contig1216.1.1|Name=mRNA_H-akashiwo_Contig1216.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=411bp
RRQSYSLQFKRKLLDEAAQTSNGKVSKKYSVSESMLRKWQRTLDSEKARN
VKPTNQQSTLRLGGGGRPTILTAAQEHEIYEWVLHARDLNLIVMKSSIQG
VALNIARRDGVDPSFKATEHWVDGFMVRHKLSLRRASTLFKLTDDKIVEK
AVNYKLYIEQLRRIRDGDFWCHDCHVFDETAVYAGQMSNTTIDRKGRSCV
GIPANGYESERVTVMLHFDLGGRKGKPIIIAEDTTMEPGQCCWEDRPDDN
VTILYTHKAWANQQACRRIINHVVPLAGRGKRRGLVIWDAAASHRAKAVK
NYVLRRRCSVVMIPSGMTWLLQGLDTVINRPFKVYLRKCINRYFANNPPR
NHRGNIKKPSLDLIIEWVTRAWAKITNAHIEEAVKHYYLHPHHGWADTKA
AKHEKFGDLI*
back to top

mRNA from alignment at H-akashiwo_Contig1216:81011..82285+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1216.1.1 ID=mRNA_H-akashiwo_Contig1216.1.1|Name=mRNA_H-akashiwo_Contig1216.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1275bp|location=Sequence derived from alignment at H-akashiwo_Contig1216:81011..82285+ (Heterosigma akashiwo CCMP452)
CGCAGGCAGTCTTATTCTTTGCAATTCAAGAGAAAACTGCTCGACGAGGC CGCCCAGACGAGCAATGGGAAAGTCAGCAAGAAGTACAGCGTCAGTGAGA GCATGCTACGGAAGTGGCAGCGTACCTTGGATTCGGAGAAGGCCCGCAAT GTGAAGCCAACGAACCAGCAGAGTACTCTGAGGCTGGGTGGTGGTGGCAG GCCGACAATTCTGACGGCGGCTCAGGAACATGAGATCTACGAGTGGGTTC TTCATGCCCGAGATTTGAACCTGATAGTGATGAAGAGCTCCATTCAAGGT GTGGCGTTGAACATTGCTCGGCGCGACGGTGTAGACCCCTCCTTCAAGGC TACAGAACATTGGGTTGACGGCTTCATGGTGAGGCACAAGCTGTCCCTGC GTAGAGCCTCAACTCTGTTCAAGCTTACCGACGACAAGATTGTGGAGAAG GCAGTGAACTACAAGTTGTACATTGAACAGCTGGTCAAACCCAAGATTTA TGGCAACGTGAACGATAATCCCCAGCGCCGGATCCGTGATGGCGATTTCT GGTGCCATGACTGCCATGTTTTTGATGAGACTGCTGTTTATGCTGGGCAG ATGAGCAATACCACCATTGACAGAAAGGGCAGAAGTTGTGTTGGCATTCC AGCCAATGGTTATGAGTCAGAGAGGGTTACTGTCATGCTTCACTTCGACC TGGGCGGGAGGAAAGGCAAGCCCATCATCATAGCAGAGGATACCACCATG GAGCCAGGTCAATGTTGCTGGGAAGACCGCCCTGATGACAATGTCACCAT CCTGTACACTCACAAAGCCTGGGCCAACCAGCAGGCGTGCAGGCGGATCA TCAACCACGTTGTCCCCCTTGCGGGCAGGGGCAAGCGCAGAGGCCTTGTT ATCTGGGATGCTGCTGCCAGCCACCGCGCCAAGGCAGTCAAGAACTACGT TCTACGCAGGAGATGCAGTGTTGTCATGATTCCTAGTGGCATGACTTGGC TGCTGCAAGGGCTTGACACCGTCATCAACAGGCCCTTCAAAGTGTATCTC AGGAAGTGCATCAATCGGTACTTTGCCAACAACCCCCCCCGCAACCACCG TGGCAACATCAAGAAGCCCTCACTGGACCTGATCATTGAATGGGTCACTC GGGCTTGGGCCAAAATCACCAATGCACACATTGAGGAGGCAGTCAAGCAC TACTACCTTCACCCCCACCATGGCTGGGCCGACACCAAGGCTGCCAAGCA CGAGAAGTTTGGTGACCTCATCTAG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1216:81011..82285+

>mRNA_H-akashiwo_Contig1216.1.1 ID=mRNA_H-akashiwo_Contig1216.1.1|Name=mRNA_H-akashiwo_Contig1216.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=1233bp|location=Sequence derived from alignment at H-akashiwo_Contig1216:81011..82285+ (Heterosigma akashiwo CCMP452)
CGCAGGCAGTCTTATTCTTTGCAATTCAAGAGAAAACTGCTCGACGAGGC
CGCCCAGACGAGCAATGGGAAAGTCAGCAAGAAGTACAGCGTCAGTGAGA
GCATGCTACGGAAGTGGCAGCGTACCTTGGATTCGGAGAAGGCCCGCAAT
GTGAAGCCAACGAACCAGCAGAGTACTCTGAGGCTGGGTGGTGGTGGCAG
GCCGACAATTCTGACGGCGGCTCAGGAACATGAGATCTACGAGTGGGTTC
TTCATGCCCGAGATTTGAACCTGATAGTGATGAAGAGCTCCATTCAAGGT
GTGGCGTTGAACATTGCTCGGCGCGACGGTGTAGACCCCTCCTTCAAGGC
TACAGAACATTGGGTTGACGGCTTCATGGTGAGGCACAAGCTGTCCCTGC
GTAGAGCCTCAACTCTGTTCAAGCTTACCGACGACAAGATTGTGGAGAAG
GCAGTGAACTACAAGTTGTACATTGAACAGCTGCGCCGGATCCGTGATGG
CGATTTCTGGTGCCATGACTGCCATGTTTTTGATGAGACTGCTGTTTATG
CTGGGCAGATGAGCAATACCACCATTGACAGAAAGGGCAGAAGTTGTGTT
GGCATTCCAGCCAATGGTTATGAGTCAGAGAGGGTTACTGTCATGCTTCA
CTTCGACCTGGGCGGGAGGAAAGGCAAGCCCATCATCATAGCAGAGGATA
CCACCATGGAGCCAGGTCAATGTTGCTGGGAAGACCGCCCTGATGACAAT
GTCACCATCCTGTACACTCACAAAGCCTGGGCCAACCAGCAGGCGTGCAG
GCGGATCATCAACCACGTTGTCCCCCTTGCGGGCAGGGGCAAGCGCAGAG
GCCTTGTTATCTGGGATGCTGCTGCCAGCCACCGCGCCAAGGCAGTCAAG
AACTACGTTCTACGCAGGAGATGCAGTGTTGTCATGATTCCTAGTGGCAT
GACTTGGCTGCTGCAAGGGCTTGACACCGTCATCAACAGGCCCTTCAAAG
TGTATCTCAGGAAGTGCATCAATCGGTACTTTGCCAACAACCCCCCCCGC
AACCACCGTGGCAACATCAAGAAGCCCTCACTGGACCTGATCATTGAATG
GGTCACTCGGGCTTGGGCCAAAATCACCAATGCACACATTGAGGAGGCAG
TCAAGCACTACTACCTTCACCCCCACCATGGCTGGGCCGACACCAAGGCT
GCCAAGCACGAGAAGTTTGGTGACCTCATCTAG
back to top