mRNA_H-akashiwo_Contig1215.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1215.2.1
Unique NamemRNA_H-akashiwo_Contig1215.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1215.2.1 vs. uniprot
Match: D7FRW0_ECTSI (Glycine cleavage system P protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRW0_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 2.930e-20
Identity = 47/80 (58.75%), Postives = 59/80 (73.75%), Query Frame = 1
Query:   13 LLSTKADIFAPKDTFTRRHLGPRVHDTAVMLQTIGINSLEELCDQTVPKQIRLKRDLQLEPPMSETEALAAIRKMADKNQ 252
            L +T  DIFA KDTF RRH+GP   D  VM++T+G+ SL++L D+TVP  IRL   L LE  +SE+EAL AIRK+ADKNQ
Sbjct:   31 LSATADDIFAAKDTFARRHIGPSDADVEVMMKTVGVKSLDDLVDRTVPHSIRLDEPLDLEDALSESEALTAIRKIADKNQ 110          
BLAST of mRNA_H-akashiwo_Contig1215.2.1 vs. uniprot
Match: A0A835ZCN8_9STRA (Glycine cleavage system P protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCN8_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 7.960e-18
Identity = 43/84 (51.19%), Postives = 62/84 (73.81%), Query Frame = 1
Query:    7 SRLLSTKA--DIFAPKDTFTRRHLGPRVHDTAVMLQTIGINSLEELCDQTVPKQIRLKRDLQLEPPMSETEALAAIRKMADKNQ 252
            +R +S+ A   +FAP DTF RRH+GP   DT  M++ +G++SL++L D+TVP  IRL + L L+ P+SE+EALA +R +ADKNQ
Sbjct:   34 NRAMSSAAVDKVFAPCDTFARRHIGPSEADTKEMMKVVGVSSLDDLVDKTVPAAIRLSKPLTLDAPLSESEALAKLRAIADKNQ 117          
BLAST of mRNA_H-akashiwo_Contig1215.2.1 vs. uniprot
Match: A0A7S2JSH8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JSH8_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.830e-16
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 1
Query:   22 TKADIFAPKDTFTRRHLGPRVHDTAVMLQTIGINSLEELCDQTVPKQI-RLKRDLQLEPPMSETEALAAIRKMADKN 249
            T AD+    DTF+RRHLGPR  D   ML++IG  + ++L   TVP  I R  ++++L+P MSE+EAL AIRKMADKN
Sbjct:   29 TSADVLDRVDTFSRRHLGPREEDAKNMLKSIGFENFDQLVKSTVPANILRDDKEMKLQPAMSESEALQAIRKMADKN 105          
BLAST of mRNA_H-akashiwo_Contig1215.2.1 vs. uniprot
Match: A0A418B3G5_9STRA (Glycine dehydrogenase (aminomethyl-transferring) (Fragment) n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B3G5_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.900e-16
Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = 1
Query:    7 SRLLSTKADIFAPKDTFTRRHLGPRVHDTAVMLQTIGINSLEELCDQTVPKQIRLKRDLQLEPPMSETEALAAIRKMADKN 249
            SR+ ST AD +   D F RRH+G    DTAVML+ IG+NS+EEL  +TVP +IRL + L L  PMSE++A AA++K+A +N
Sbjct:   19 SRVFST-ADTYRLTDQFARRHIGAGEEDTAVMLKKIGLNSIEELIHKTVPSEIRLTKPLDLPAPMSESQAYAALKKIASRN 98          
BLAST of mRNA_H-akashiwo_Contig1215.2.1 vs. uniprot
Match: A0A7C2KTZ3_9BACT (Glycine dehydrogenase (decarboxylating) n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A7C2KTZ3_9BACT)

HSP 1 Score: 81.6 bits (200), Expect = 3.340e-16
Identity = 38/73 (52.05%), Postives = 52/73 (71.23%), Query Frame = 1
Query:   31 DIFAPKDTFTRRHLGPRVHDTAVMLQTIGINSLEELCDQTVPKQIRLKRDLQLEPPMSETEALAAIRKMADKN 249
            D+    D F  RH+GPR HD A ML+ +G  +L+EL DQT+P  IRL+  L+L+PP SE EALAA+R++A +N
Sbjct:   10 DVLQASDAFVDRHIGPRDHDIAQMLEVVGCRTLDELTDQTIPADIRLREPLRLDPPRSEHEALAALREIARQN 82          
BLAST of mRNA_H-akashiwo_Contig1215.2.1 vs. uniprot
Match: A0A024UEU7_9STRA (Glycine cleavage system P protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024UEU7_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 3.340e-16
Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = 1
Query:    7 SRLLSTKADIFAPKDTFTRRHLGPRVHDTAVMLQTIGINSLEELCDQTVPKQIRLKRDLQLEPPMSETEALAAIRKMADKN 249
            SR+ ST AD +   D F RRH+G    DTAVML+ IG+NS+EEL  +TVP +IRL + L L  PMSE++A AA++K+A +N
Sbjct:   21 SRVFST-ADTYRLTDQFARRHIGAGEEDTAVMLKKIGLNSIEELIHKTVPSEIRLTKPLDLPAPMSESQAYAALKKIASRN 100          
BLAST of mRNA_H-akashiwo_Contig1215.2.1 vs. uniprot
Match: A0A1V9YDI8_9STRA (Glycine cleavage system P protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YDI8_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 6.240e-16
Identity = 43/80 (53.75%), Postives = 53/80 (66.25%), Query Frame = 1
Query:   10 RLLSTKADIFAPKDTFTRRHLGPRVHDTAVMLQTIGINSLEELCDQTVPKQIRLKRDLQLEPPMSETEALAAIRKMADKN 249
            R  S   D +   D F RRH+G    DTA MLQTIG  SLE L  +TVPK+IRLK+ L L  PMSE++A+A +RK+A KN
Sbjct:   19 RAFSAAKDPYRLTDQFARRHIGASEDDTAFMLQTIGEKSLESLIKKTVPKEIRLKKKLNLPAPMSESQAMAKLRKIAKKN 98          
BLAST of mRNA_H-akashiwo_Contig1215.2.1 vs. uniprot
Match: K0QZL5_THAOC (Glycine cleavage system P protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZL5_THAOC)

HSP 1 Score: 80.5 bits (197), Expect = 8.520e-16
Identity = 42/74 (56.76%), Postives = 50/74 (67.57%), Query Frame = 1
Query:   28 ADIFAPKDTFTRRHLGPRVHDTAVMLQTIGINSLEELCDQTVPKQIRLKRDLQLEPPMSETEALAAIRKMADKN 249
            AD     DTF+RRHLGP   DT VMLQ+IG +S E L + TVP  I   ++L LEP +SETEAL  I+ MADKN
Sbjct:   40 ADALDMADTFSRRHLGPAEEDTKVMLQSIGFDSFESLVNSTVPANILSGKELNLEPALSETEALKRIKSMADKN 113          
BLAST of mRNA_H-akashiwo_Contig1215.2.1 vs. uniprot
Match: A0A090X3U2_NONUL (Glycine dehydrogenase n=1 Tax=Nonlabens ulvanivorans TaxID=906888 RepID=A0A090X3U2_NONUL)

HSP 1 Score: 75.1 bits (183), Expect = 1.370e-15
Identity = 37/67 (55.22%), Postives = 50/67 (74.63%), Query Frame = 1
Query:   49 DTFTRRHLGPRVHDTAVMLQTIGINSLEELCDQTVPKQIRLKRDLQLEPPMSETEALAAIRKMADKN 249
            D F  RH+GPR  D A ML+TIG+ S+++L  +TVP+ IRLK+DLQL+  MSE E L+ I+K+ DKN
Sbjct:    4 DRFALRHIGPRKADLAPMLETIGVESIDQLVYETVPENIRLKQDLQLDTAMSEYEFLSHIKKLGDKN 70          
BLAST of mRNA_H-akashiwo_Contig1215.2.1 vs. uniprot
Match: A0A3A0AN79_9CHLR (Glycine dehydrogenase (decarboxylating) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3A0AN79_9CHLR)

HSP 1 Score: 79.7 bits (195), Expect = 1.590e-15
Identity = 41/77 (53.25%), Postives = 53/77 (68.83%), Query Frame = 1
Query:   22 TKADIFAPKDTFTRRHLGPRVHDTAVMLQTIGINSLEELCDQTVPKQIRLKRDLQLEPPMSETEALAAIRKMADKNQ 252
            + A++  P D F  RHLGPR  D A ML+TIG+NSL+EL +QTVP  IR+K  L L  P SE+E LA +R +A +NQ
Sbjct:   25 SNAELLQPLDQFAPRHLGPRPADVAEMLRTIGVNSLDELINQTVPAPIRMKTPLHLPGPRSESEVLADLRDLARQNQ 101          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1215.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRW0_ECTSI2.930e-2058.75Glycine cleavage system P protein n=1 Tax=Ectocarp... [more]
A0A835ZCN8_9STRA7.960e-1851.19Glycine cleavage system P protein n=1 Tax=Tribonem... [more]
A0A7S2JSH8_9STRA1.830e-1653.25Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A418B3G5_9STRA2.900e-1653.09Glycine dehydrogenase (aminomethyl-transferring) (... [more]
A0A7C2KTZ3_9BACT3.340e-1652.05Glycine dehydrogenase (decarboxylating) n=1 Tax=Ph... [more]
A0A024UEU7_9STRA3.340e-1653.09Glycine cleavage system P protein n=3 Tax=Aphanomy... [more]
A0A1V9YDI8_9STRA6.240e-1653.75Glycine cleavage system P protein n=1 Tax=Achlya h... [more]
K0QZL5_THAOC8.520e-1656.76Glycine cleavage system P protein n=1 Tax=Thalassi... [more]
A0A090X3U2_NONUL1.370e-1555.22Glycine dehydrogenase n=1 Tax=Nonlabens ulvanivora... [more]
A0A3A0AN79_9CHLR1.590e-1553.25Glycine dehydrogenase (decarboxylating) n=1 Tax=Ch... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1215contigH-akashiwo_Contig1215:62880..63585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FRW0
Preferred nameGLDC
PFAMsGDC-P
Model size256
Max annot lvl2759|Eukaryota
KEGG rclassRC00022,RC00929,RC02834,RC02880
KEGG koko:K00281
KEGG ReactionR01221,R03425
KEGG Pathwayko00260,ko00630,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map01100,map01110,map01130,map01200
KEGG ModuleM00532
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0001505,GO:0003674,GO:0003824,GO:0004375,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005759,GO:0005886,GO:0005960,GO:0006082,GO:0006091,GO:0006520,GO:0006544,GO:0006546,GO:0006730,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009055,GO:0009056,GO:0009063,GO:0009069,GO:0009071,GO:0009987,GO:0010033,GO:0010243,GO:0014070,GO:0014075,GO:0016020,GO:0016054,GO:0016491,GO:0016594,GO:0016597,GO:0016638,GO:0016639,GO:0016642,GO:0017144,GO:0019464,GO:0019752,GO:0019842,GO:0019899,GO:0022900,GO:0030170,GO:0031406,GO:0031974,GO:0032991,GO:0033993,GO:0034097,GO:0036094,GO:0036255,GO:0042133,GO:0042135,GO:0042165,GO:0042221,GO:0042737,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046395,GO:0046983,GO:0047960,GO:0048037,GO:0050662,GO:0050896,GO:0051716,GO:0055114,GO:0060359,GO:0065007,GO:0065008,GO:0070013,GO:0070279,GO:0070280,GO:0070542,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1901698,GO:1901700,GO:1902494,GO:1903442,GO:1990204,GO:1990823,GO:1990830
Exons3
Evalue4.8e-21
EggNOG OGsCOG1003@1|root,KOG2040@2759|Eukaryota
EC1.4.4.2
Descriptionglycine dehydrogenase (decarboxylating) activity
Cds size255
COG categoryE
BiGG ReactioniRC1080.CRv4_Au5_s12_g3759_t1
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387123.655227-CDS-H-akashiwo_Contig1215:62879..629331681387123.655227-CDS-H-akashiwo_Contig1215:62879..62933Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1215 62880..62933 +
1681387123.6676545-CDS-H-akashiwo_Contig1215:63086..631431681387123.6676545-CDS-H-akashiwo_Contig1215:63086..63143Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1215 63087..63143 +
1681387123.6786067-CDS-H-akashiwo_Contig1215:63441..635851681387123.6786067-CDS-H-akashiwo_Contig1215:63441..63585Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1215 63442..63585 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1215.2.1prot_H-akashiwo_Contig1215.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1215 62880..63585 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1215.2.1

>prot_H-akashiwo_Contig1215.2.1 ID=prot_H-akashiwo_Contig1215.2.1|Name=mRNA_H-akashiwo_Contig1215.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=85bp
MGSRLLSTKADIFAPKDTFTRRHLGPRVHDTAVMLQTIGINSLEELCDQT
VPKQIRLKRDLQLEPPMSETEALAAIRKMADKNQA
back to top

mRNA from alignment at H-akashiwo_Contig1215:62880..63585+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1215.2.1 ID=mRNA_H-akashiwo_Contig1215.2.1|Name=mRNA_H-akashiwo_Contig1215.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=706bp|location=Sequence derived from alignment at H-akashiwo_Contig1215:62880..63585+ (Heterosigma akashiwo CCMP452)
ATGGGGAGCAGACTGCTTTCTACAAAGGCTGATATCTTCGCCCCTAAGGA CACAGTAAGTAAAGCAGGCACGCCGTGGCACTCTCCTTATTGCCTATTCA AAGATATATTGTCCTTTTGTGTAGAGATACCGCAGACGCAATCAGGCTGT CTCAACAACGTCTTCATATGATTATGATTTTCTTCTCTGTTATCCCCTCG CAAACAGTTTACACGGAGGCATCTGGGTCCTCGCGTTCACGACACAGCTG TCATGCTTCAAACGGTACGCTGGCGTTCTCAAAATTTAGAAATGCTGGAA ACAAAGCATGTTGTTGCTGCATGCATTTCTCATGTTGTTGCAGCGAGCAC TGGATGGTTCGTTCTCACTGTTGATATGCTCCTCAAACCACTCTCATGTT GCATGGTCTGATTTATTGGCCAAGCCTTAAAAATCCCATGACCTGCCCCC AACAAATGCTGAATGGCGTCAGCCCTCTGCCAAGCCTTAGGTCTAGCCCC AAATCCACCAGGAAAACAAAATTAAAATCTTCACGTGTGGTTGGGCGGTG GGGCTCCCTCAGATCGGCATCAACAGCCTGGAGGAGCTGTGCGACCAGAC GGTGCCCAAGCAGATCCGCCTCAAGCGCGACCTGCAGCTGGAGCCCCCCA TGAGCGAGACCGAGGCCCTGGCCGCCATCCGCAAGATGGCCGACAAGAAC CAGGCG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1215:62880..63585+

>mRNA_H-akashiwo_Contig1215.2.1 ID=mRNA_H-akashiwo_Contig1215.2.1|Name=mRNA_H-akashiwo_Contig1215.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=255bp|location=Sequence derived from alignment at H-akashiwo_Contig1215:62880..63585+ (Heterosigma akashiwo CCMP452)
ATGGGGAGCAGACTGCTTTCTACAAAGGCTGATATCTTCGCCCCTAAGGA
CACATTTACACGGAGGCATCTGGGTCCTCGCGTTCACGACACAGCTGTCA
TGCTTCAAACGATCGGCATCAACAGCCTGGAGGAGCTGTGCGACCAGACG
GTGCCCAAGCAGATCCGCCTCAAGCGCGACCTGCAGCTGGAGCCCCCCAT
GAGCGAGACCGAGGCCCTGGCCGCCATCCGCAAGATGGCCGACAAGAACC
AGGCG
back to top